Wall clock time and date at job start Tue Mar 31 2020 00:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34176 * 125.43897 * 2 1 4 4 C 1.47021 * 105.95888 * 180.02562 * 3 2 1 5 5 C 1.47381 * 127.19391 * 179.97438 * 4 3 2 6 6 O 1.21612 * 120.00083 * 359.97438 * 5 4 3 7 7 N 1.34780 * 119.99693 * 180.02562 * 5 4 3 8 8 C 1.46495 * 119.99613 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47161 * 173.57291 * 8 7 5 10 10 H 1.09000 * 109.99610 * 56.57144 * 9 8 7 11 11 C 1.54321 * 109.88544 * 177.67143 * 9 8 7 12 12 C 1.55160 * 102.94384 * 141.60874 * 11 9 8 13 13 C 1.54915 * 101.57800 * 324.49652 * 12 11 9 14 14 N 1.47026 * 109.87967 * 295.48000 * 9 8 7 15 15 C 1.36940 * 125.64956 * 61.68205 * 14 9 8 16 16 H 1.07994 * 120.00472 * 323.01037 * 15 14 9 17 17 C 1.38812 * 119.99640 * 143.00645 * 15 14 9 18 18 N 1.31615 * 119.99977 * 161.96005 * 17 15 14 19 19 Si 1.86802 * 120.00205 * 341.96021 * 17 15 14 20 20 H 1.48504 * 109.47258 * 91.72584 * 19 17 15 21 21 H 1.48497 * 109.47041 * 211.72509 * 19 17 15 22 22 H 1.48499 * 109.47309 * 331.72668 * 19 17 15 23 23 C 1.36420 * 105.61452 * 0.22567 * 4 3 2 24 24 O 1.33664 * 108.39163 * 359.63353 * 23 4 3 25 25 H 1.08999 * 109.47047 * 90.00063 * 1 2 3 26 26 H 1.08998 * 109.46631 * 210.00018 * 1 2 3 27 27 H 1.08997 * 109.47066 * 329.99622 * 1 2 3 28 28 H 1.08005 * 127.02319 * 0.02562 * 3 2 1 29 29 H 0.96998 * 120.00168 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47206 * 53.57600 * 8 7 5 31 31 H 1.09000 * 109.47688 * 293.57077 * 8 7 5 32 32 H 1.09008 * 110.71808 * 23.24388 * 11 9 8 33 33 H 1.09004 * 110.71991 * 259.97394 * 11 9 8 34 34 H 1.08992 * 111.00166 * 82.57086 * 12 11 9 35 35 H 1.09000 * 111.00497 * 206.42669 * 12 11 9 36 36 H 1.09001 * 110.35912 * 155.84831 * 13 12 11 37 37 H 1.08991 * 110.36849 * 278.05990 * 13 12 11 38 38 H 0.96996 * 120.00297 * 180.02562 * 18 17 15 39 39 H 1.07992 * 125.80549 * 179.75276 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6711 0.6029 -0.0006 5 6 4.9025 1.4126 -0.0014 6 8 4.8320 2.6267 -0.0020 7 7 6.1068 0.8075 -0.0024 8 6 7.3309 1.6124 -0.0038 9 6 8.5447 0.6949 0.1567 10 1 8.5504 -0.0572 -0.6322 11 6 9.8431 1.5270 0.0980 12 6 10.7410 0.8457 1.1643 13 6 9.6988 0.4437 2.2376 14 7 8.5055 0.0393 1.4722 15 6 7.5237 -0.8074 1.9130 16 1 6.4932 -0.6244 1.6468 17 6 7.8530 -1.9009 2.7020 18 7 6.9236 -2.5030 3.4133 19 14 9.6154 -2.5181 2.7543 20 1 10.3388 -1.8561 3.8695 21 1 9.6190 -3.9880 2.9653 22 1 10.2893 -2.2008 1.4696 23 6 3.5791 -0.7582 -0.0061 24 8 2.2852 -1.0935 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5139 28 1 1.9595 2.1230 0.0004 29 1 6.1631 -0.1609 -0.0023 30 1 7.3000 2.3220 0.8230 31 1 7.4079 2.1552 -0.9458 32 1 9.6478 2.5657 0.3649 33 1 10.2993 1.4607 -0.8897 34 1 11.2374 -0.0333 0.7532 35 1 11.4681 1.5492 1.5700 36 1 10.0693 -0.3915 2.8320 37 1 9.4692 1.2934 2.8804 38 1 7.1538 -3.2669 3.9649 39 1 4.4103 -1.4476 -0.0119 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027848739.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:35 Heat of formation + Delta-G solvation = -18.680418 kcal Electronic energy + Delta-G solvation = -21915.251919 eV Core-core repulsion = 18631.397623 eV Total energy + Delta-G solvation = -3283.854296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -43.54163 -40.62991 -39.32619 -35.56810 -34.63509 -34.06565 -33.02440 -31.76672 -30.78901 -27.65323 -26.63295 -25.82672 -24.02799 -22.30372 -22.02029 -21.37530 -20.48412 -19.14246 -18.32361 -17.88119 -17.30380 -17.12740 -16.76545 -16.37251 -15.87695 -15.40349 -15.18000 -14.83634 -14.32975 -14.21259 -13.99869 -13.87925 -13.80003 -13.73287 -13.60049 -13.05144 -12.94167 -12.71225 -12.62860 -12.27435 -12.06382 -11.73395 -11.52839 -11.38850 -11.08560 -10.83797 -10.64491 -9.98364 -9.52980 -8.72829 -8.15871 -5.57593 0.34546 1.04132 1.32357 1.41658 1.52787 1.88035 2.23655 2.40063 2.45796 3.05594 3.36837 3.63941 3.68290 3.91916 3.99672 4.04827 4.13957 4.30932 4.42313 4.48210 4.53960 4.68134 4.74919 4.75630 4.77129 4.87052 4.89117 5.00733 5.01247 5.10416 5.15049 5.31709 5.42893 5.48301 5.52917 5.90523 6.00650 6.21745 6.57866 6.83372 7.21561 7.56269 8.23788 9.01094 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019179 B = 0.005534 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.601445 B = 5058.672229 C = 6264.344462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.012 4.012 3 C -0.190 4.190 4 C -0.261 4.261 5 C 0.579 3.421 6 O -0.592 6.592 7 N -0.702 5.702 8 C 0.121 3.879 9 C 0.139 3.861 10 H 0.055 0.945 11 C -0.111 4.111 12 C -0.125 4.125 13 C 0.102 3.898 14 N -0.618 5.618 15 C -0.240 4.240 16 H 0.073 0.927 17 C -0.020 4.020 18 N -0.946 5.946 19 Si 0.946 3.054 20 H -0.288 1.288 21 H -0.314 1.314 22 H -0.254 1.254 23 C 0.036 3.964 24 O -0.178 6.178 25 H 0.102 0.898 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.410 0.590 30 H 0.043 0.957 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.521 4.389 -9.875 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.060 4.060 3 C -0.209 4.209 4 C -0.265 4.265 5 C 0.368 3.632 6 O -0.475 6.475 7 N -0.353 5.353 8 C -0.005 4.005 9 C 0.033 3.967 10 H 0.072 0.928 11 C -0.149 4.149 12 C -0.163 4.163 13 C -0.022 4.022 14 N -0.344 5.344 15 C -0.370 4.370 16 H 0.090 0.910 17 C -0.217 4.217 18 N -0.590 5.590 19 Si 0.777 3.223 20 H -0.216 1.216 21 H -0.243 1.243 22 H -0.178 1.178 23 C -0.034 4.034 24 O -0.073 6.073 25 H 0.120 0.880 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.179 0.821 29 H 0.248 0.752 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.116 0.884 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -3.760 4.766 -9.760 11.494 hybrid contribution 0.903 -0.865 0.832 1.502 sum -2.857 3.901 -8.928 10.153 Atomic orbital electron populations 1.20545 0.81265 1.05524 1.05229 1.23099 0.95857 0.82702 1.04348 1.22615 0.89632 1.00481 1.08204 1.21601 0.94895 0.94112 1.15894 1.17598 0.83332 0.86728 0.75568 1.90669 1.88011 1.15187 1.53665 1.46071 1.05157 1.11354 1.72733 1.21943 0.83893 0.94072 1.00566 1.21518 0.93456 0.93559 0.88151 0.92762 1.22526 0.92999 0.98877 1.00480 1.22749 0.96848 1.00823 0.95911 1.22090 0.88455 0.96610 0.95071 1.44857 1.24561 1.52872 1.12134 1.18705 0.88077 1.01386 1.28788 0.91005 1.26031 1.00276 0.96890 0.98500 1.69931 1.35173 1.24192 1.29744 0.85811 0.82579 0.75148 0.78787 1.21569 1.24339 1.17794 1.24748 0.84680 0.95282 0.98690 1.83753 1.16440 1.36084 1.71045 0.87979 0.89319 0.87627 0.82093 0.75182 0.93893 0.90566 0.90009 0.87939 0.91511 0.88364 0.95779 0.95583 0.92993 0.75858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.07 10.40 71.24 0.74 -0.33 16 2 C -0.01 -0.31 7.28 24.76 0.18 -0.13 16 3 C -0.19 -5.99 10.90 23.65 0.26 -5.73 16 4 C -0.26 -9.50 6.31 -18.99 -0.12 -9.62 16 5 C 0.58 23.77 7.81 86.65 0.68 24.44 16 6 O -0.59 -27.53 16.97 -4.07 -0.07 -27.59 16 7 N -0.70 -26.90 4.33 -466.41 -2.02 -28.92 16 8 C 0.12 4.31 5.15 86.38 0.44 4.75 16 9 C 0.14 4.81 3.30 45.34 0.15 4.96 16 10 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 11 C -0.11 -2.89 6.48 31.78 0.21 -2.68 16 12 C -0.13 -3.62 7.09 31.99 0.23 -3.39 16 13 C 0.10 4.07 6.27 86.86 0.54 4.61 16 14 N -0.62 -27.08 2.65 -668.26 -1.77 -28.85 16 15 C -0.24 -12.50 9.47 84.03 0.80 -11.70 16 16 H 0.07 3.90 5.59 -2.91 -0.02 3.89 16 17 C -0.02 -1.12 5.45 84.86 0.46 -0.65 16 18 N -0.95 -56.42 13.97 21.65 0.30 -56.11 16 19 Si 0.95 44.94 24.97 68.60 1.71 46.66 16 20 H -0.29 -13.55 6.68 99.48 0.66 -12.88 16 21 H -0.31 -15.31 7.11 99.48 0.71 -14.60 16 22 H -0.25 -11.24 7.11 99.48 0.71 -10.54 16 23 C 0.04 1.18 11.61 67.40 0.78 1.96 16 24 O -0.18 -5.37 10.52 4.39 0.05 -5.32 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.16 4.70 8.06 -2.91 -0.02 4.68 16 29 H 0.41 15.50 5.35 -92.71 -0.50 15.01 16 30 H 0.04 1.74 8.12 -2.39 -0.02 1.72 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.08 1.98 7.85 -2.38 -0.02 1.96 16 33 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 36 H 0.02 1.06 3.28 -2.39 -0.01 1.05 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 39 H 0.23 6.56 7.47 -2.91 -0.02 6.54 16 Total: -1.00 -71.66 319.14 4.08 -67.58 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.53 Total: 26.08 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.35 Total: 6.49 kcal Atomic # 7 Polarization: -110.40 SS G_CDS: -3.49 Total: -113.89 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -0.02 Total: -32.92 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.71 Total: 46.66 kcal Total: -71.66 4.08 -67.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027848739.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.899 kcal (2) G-P(sol) polarization free energy of solvation -71.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds