Wall clock time and date at job start Tue Mar 31 2020 00:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34182 * 125.43148 * 2 1 4 4 C 1.47024 * 105.95310 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19412 * 180.02562 * 4 3 2 6 6 O 1.21621 * 120.00009 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00205 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00266 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47479 * 184.66200 * 8 7 5 10 10 H 1.09003 * 109.99808 * 54.40555 * 9 8 7 11 11 C 1.54322 * 109.88159 * 293.31179 * 9 8 7 12 12 C 1.55280 * 103.00693 * 218.46756 * 11 9 8 13 13 C 1.54911 * 101.52761 * 35.36011 * 12 11 9 14 14 N 1.47019 * 109.88241 * 175.50089 * 9 8 7 15 15 C 1.36933 * 125.65189 * 298.33224 * 14 9 8 16 16 H 1.08004 * 119.99871 * 346.29954 * 15 14 9 17 17 C 1.38813 * 120.00231 * 166.29081 * 15 14 9 18 18 N 1.31625 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46970 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47083 * 120.00361 * 19 17 15 22 22 H 1.48499 * 109.47355 * 240.00322 * 19 17 15 23 23 C 1.36416 * 105.61420 * 0.25857 * 4 3 2 24 24 O 1.33649 * 108.39682 * 359.58023 * 23 4 3 25 25 H 1.09003 * 109.46862 * 90.00272 * 1 2 3 26 26 H 1.09008 * 109.46601 * 209.99830 * 1 2 3 27 27 H 1.08991 * 109.47405 * 329.99761 * 1 2 3 28 28 H 1.07998 * 127.02540 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99926 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.46997 * 64.65685 * 8 7 5 31 31 H 1.09000 * 109.47147 * 304.66068 * 8 7 5 32 32 H 1.08999 * 110.72020 * 336.74994 * 11 9 8 33 33 H 1.09002 * 110.72347 * 100.02645 * 11 9 8 34 34 H 1.08997 * 110.95433 * 277.33395 * 12 11 9 35 35 H 1.09005 * 111.09600 * 153.44788 * 12 11 9 36 36 H 1.08995 * 110.36280 * 204.23556 * 13 12 11 37 37 H 1.09003 * 110.36701 * 82.02321 * 13 12 11 38 38 H 0.96998 * 119.99971 * 179.97438 * 18 17 15 39 39 H 1.08004 * 125.79782 * 179.73133 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6031 -0.0006 5 6 4.9024 1.4128 -0.0003 6 8 4.8318 2.6270 0.0000 7 7 6.1067 0.8079 -0.0005 8 6 7.3308 1.6128 -0.0008 9 6 8.5468 0.6918 -0.1181 10 1 8.4450 0.0495 -0.9929 11 6 8.6761 -0.1715 1.1545 12 6 10.2105 -0.2232 1.3873 13 6 10.6417 1.1909 0.9247 14 7 9.7735 1.4947 -0.2275 15 6 10.0622 2.3781 -1.2332 16 1 9.4766 2.3733 -2.1407 17 6 11.1073 3.2798 -1.0863 18 7 11.8211 3.2854 0.0196 19 14 11.5006 4.4853 -2.4579 20 1 10.5575 4.2766 -3.5858 21 1 11.3650 5.8742 -1.9503 22 1 12.8918 4.2637 -2.9279 23 6 3.5790 -0.7580 -0.0069 24 8 2.2853 -1.0934 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.9593 2.1231 -0.0004 29 1 6.1630 -0.1605 -0.0012 30 1 7.3928 2.1800 0.9279 31 1 7.3131 2.3007 -0.8461 32 1 8.1760 0.3062 1.9970 33 1 8.2773 -1.1716 0.9844 34 1 10.6726 -0.9939 0.7704 35 1 10.4425 -0.3772 2.4412 36 1 11.6883 1.1878 0.6206 37 1 10.4812 1.9164 1.7223 38 1 12.5516 3.9152 0.1221 39 1 4.4105 -1.4473 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027848740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:46 Heat of formation + Delta-G solvation = -3.623313 kcal Electronic energy + Delta-G solvation = -21251.231697 eV Core-core repulsion = 17968.030326 eV Total energy + Delta-G solvation = -3283.201371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.68732 -39.21248 -37.57075 -34.27189 -33.22912 -32.54397 -32.13131 -29.67042 -28.71169 -26.83733 -25.07521 -24.27773 -22.74608 -21.19596 -20.33385 -19.78400 -19.28913 -17.85603 -16.78648 -16.46950 -16.02755 -15.76660 -14.93700 -14.67930 -14.52762 -14.01815 -13.80198 -13.43443 -13.32115 -13.12162 -13.00571 -12.86809 -12.13819 -12.01024 -11.89637 -11.77969 -11.36579 -10.94663 -10.80945 -10.23406 -10.10261 -9.95528 -9.87190 -9.85478 -9.75719 -9.65963 -8.80568 -8.66610 -8.56143 -6.85608 -5.77116 -3.13817 1.27732 1.93146 2.64565 3.37765 3.42791 3.47131 3.48907 3.54139 4.36059 4.48783 4.60813 4.81768 5.08034 5.14264 5.30018 5.34735 5.37948 5.40669 5.51928 5.61090 5.61391 5.78916 5.81663 6.03148 6.12225 6.21041 6.21670 6.44380 6.53456 6.60221 6.69047 6.79844 6.84171 7.04346 7.51257 7.59799 7.78295 7.79130 8.24769 8.48668 9.16922 9.77344 10.43932 11.34640 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.003760 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.799265 B = 7444.972237 C = 8257.143760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.020 4.020 3 C -0.163 4.163 4 C -0.222 4.222 5 C 0.577 3.423 6 O -0.537 6.537 7 N -0.719 5.719 8 C 0.109 3.891 9 C 0.152 3.848 10 H 0.038 0.962 11 C -0.128 4.128 12 C -0.148 4.148 13 C 0.171 3.829 14 N -0.589 5.589 15 C -0.233 4.233 16 H 0.077 0.923 17 C -0.002 4.002 18 N -0.916 5.916 19 Si 0.911 3.089 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.013 3.987 24 O -0.175 6.175 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.158 0.842 29 H 0.392 0.608 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.253 0.747 39 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.521 -11.495 2.045 21.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.069 4.069 3 C -0.183 4.183 4 C -0.227 4.227 5 C 0.364 3.636 6 O -0.415 6.415 7 N -0.370 5.370 8 C -0.015 4.015 9 C 0.043 3.957 10 H 0.056 0.944 11 C -0.166 4.166 12 C -0.187 4.187 13 C 0.046 3.954 14 N -0.313 5.313 15 C -0.362 4.362 16 H 0.095 0.905 17 C -0.199 4.199 18 N -0.562 5.562 19 Si 0.741 3.259 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.217 1.217 23 C -0.057 4.057 24 O -0.071 6.071 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.225 0.775 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -17.471 -10.696 2.000 20.583 hybrid contribution 0.453 0.466 -0.642 0.914 sum -17.019 -10.229 1.358 19.903 Atomic orbital electron populations 1.20312 0.84742 1.04147 1.03640 1.22296 0.94098 0.83694 1.06805 1.22523 0.90150 0.99711 1.05871 1.21670 0.94952 0.93324 1.12766 1.17317 0.82296 0.87182 0.76841 1.90798 1.87112 1.13692 1.49935 1.45995 1.06032 1.10125 1.74800 1.22278 0.81732 0.94946 1.02583 1.21133 0.87096 0.92008 0.95444 0.94434 1.22654 0.97668 0.98428 0.97846 1.23025 0.94924 1.00942 0.99800 1.21476 0.96206 0.88894 0.88792 1.44498 1.13154 1.47965 1.25696 1.19044 1.13825 1.09249 0.94033 0.90542 1.24908 0.99146 0.98496 0.97363 1.69948 1.22106 1.38604 1.25534 0.86061 0.77749 0.81090 0.80980 1.20347 1.21577 1.21710 1.24399 0.84173 0.95467 1.01683 1.83701 1.16504 1.35502 1.71414 0.90019 0.90480 0.89211 0.82434 0.77461 0.91846 0.90949 0.91765 0.92406 0.92294 0.92293 0.90754 0.95658 0.93648 0.77182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.43 10.40 36.00 0.37 -0.06 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.16 -2.03 10.90 -37.45 -0.41 -2.44 16 4 C -0.22 -3.02 6.31 -103.27 -0.65 -3.67 16 5 C 0.58 9.81 7.81 -12.54 -0.10 9.72 16 6 O -0.54 -11.57 16.98 5.26 0.09 -11.48 16 7 N -0.72 -11.05 5.40 -61.40 -0.33 -11.38 16 8 C 0.11 2.14 5.09 -4.04 -0.02 2.12 16 9 C 0.15 2.97 3.22 -66.96 -0.22 2.75 16 10 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 11 C -0.13 -2.07 6.07 -24.83 -0.15 -2.22 16 12 C -0.15 -2.67 7.10 -24.51 -0.17 -2.84 16 13 C 0.17 4.05 5.42 -2.53 -0.01 4.04 16 14 N -0.59 -14.58 3.13 -162.57 -0.51 -15.09 16 15 C -0.23 -6.41 9.73 -15.06 -0.15 -6.56 16 16 H 0.08 2.07 7.83 -52.48 -0.41 1.65 16 17 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 18 N -0.92 -26.68 10.54 55.49 0.58 -26.10 16 19 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 23 C 0.01 0.13 11.61 30.08 0.35 0.48 16 24 O -0.18 -1.85 10.52 7.67 0.08 -1.76 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.39 4.55 7.22 -40.82 -0.29 4.25 16 30 H 0.06 1.36 8.04 -51.93 -0.42 0.95 16 31 H 0.07 1.63 7.86 -51.93 -0.41 1.22 16 32 H 0.06 1.03 7.78 -51.93 -0.40 0.63 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 1.96 6.86 -51.93 -0.36 1.61 16 37 H 0.03 0.65 8.08 -51.93 -0.42 0.24 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.21 1.29 7.47 -52.48 -0.39 0.90 16 LS Contribution 328.36 15.07 4.95 4.95 Total: -1.00 -33.91 328.36 -7.29 -41.20 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.62 Total: 1.74 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.51 Total: 0.70 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -0.25 Total: -52.57 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.17 Total: -13.25 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.91 -7.29 -41.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027848740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.573 kcal (2) G-P(sol) polarization free energy of solvation -33.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds