Wall clock time and date at job start Tue Mar 31 2020 00:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34182 * 125.43148 * 2 1 4 4 C 1.47024 * 105.95310 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19412 * 180.02562 * 4 3 2 6 6 O 1.21621 * 120.00009 * 359.97438 * 5 4 3 7 7 N 1.34771 * 120.00205 * 179.97438 * 5 4 3 8 8 C 1.46500 * 120.00266 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47479 * 184.66200 * 8 7 5 10 10 H 1.09003 * 109.99808 * 54.40555 * 9 8 7 11 11 C 1.54322 * 109.88159 * 293.31179 * 9 8 7 12 12 C 1.55280 * 103.00693 * 218.46756 * 11 9 8 13 13 C 1.54911 * 101.52761 * 35.36011 * 12 11 9 14 14 N 1.47019 * 109.88241 * 175.50089 * 9 8 7 15 15 C 1.36933 * 125.65189 * 298.33224 * 14 9 8 16 16 H 1.08004 * 119.99871 * 346.29954 * 15 14 9 17 17 C 1.38813 * 120.00231 * 166.29081 * 15 14 9 18 18 N 1.31625 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00141 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46970 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47083 * 120.00361 * 19 17 15 22 22 H 1.48499 * 109.47355 * 240.00322 * 19 17 15 23 23 C 1.36416 * 105.61420 * 0.25857 * 4 3 2 24 24 O 1.33649 * 108.39682 * 359.58023 * 23 4 3 25 25 H 1.09003 * 109.46862 * 90.00272 * 1 2 3 26 26 H 1.09008 * 109.46601 * 209.99830 * 1 2 3 27 27 H 1.08991 * 109.47405 * 329.99761 * 1 2 3 28 28 H 1.07998 * 127.02540 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99926 * 0.02562 * 7 5 4 30 30 H 1.09002 * 109.46997 * 64.65685 * 8 7 5 31 31 H 1.09000 * 109.47147 * 304.66068 * 8 7 5 32 32 H 1.08999 * 110.72020 * 336.74994 * 11 9 8 33 33 H 1.09002 * 110.72347 * 100.02645 * 11 9 8 34 34 H 1.08997 * 110.95433 * 277.33395 * 12 11 9 35 35 H 1.09005 * 111.09600 * 153.44788 * 12 11 9 36 36 H 1.08995 * 110.36280 * 204.23556 * 13 12 11 37 37 H 1.09003 * 110.36701 * 82.02321 * 13 12 11 38 38 H 0.96998 * 119.99971 * 179.97438 * 18 17 15 39 39 H 1.08004 * 125.79782 * 179.73133 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2849 1.0933 0.0000 4 6 3.6710 0.6031 -0.0006 5 6 4.9024 1.4128 -0.0003 6 8 4.8318 2.6270 0.0000 7 7 6.1067 0.8079 -0.0005 8 6 7.3308 1.6128 -0.0008 9 6 8.5468 0.6918 -0.1181 10 1 8.4450 0.0495 -0.9929 11 6 8.6761 -0.1715 1.1545 12 6 10.2105 -0.2232 1.3873 13 6 10.6417 1.1909 0.9247 14 7 9.7735 1.4947 -0.2275 15 6 10.0622 2.3781 -1.2332 16 1 9.4766 2.3733 -2.1407 17 6 11.1073 3.2798 -1.0863 18 7 11.8211 3.2854 0.0196 19 14 11.5006 4.4853 -2.4579 20 1 10.5575 4.2766 -3.5858 21 1 11.3650 5.8742 -1.9503 22 1 12.8918 4.2637 -2.9279 23 6 3.5790 -0.7580 -0.0069 24 8 2.2853 -1.0934 -0.0006 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8901 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 1.9593 2.1231 -0.0004 29 1 6.1630 -0.1605 -0.0012 30 1 7.3928 2.1800 0.9279 31 1 7.3131 2.3007 -0.8461 32 1 8.1760 0.3062 1.9970 33 1 8.2773 -1.1716 0.9844 34 1 10.6726 -0.9939 0.7704 35 1 10.4425 -0.3772 2.4412 36 1 11.6883 1.1878 0.6206 37 1 10.4812 1.9164 1.7223 38 1 12.5516 3.9152 0.1221 39 1 4.4105 -1.4473 -0.0132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027848740.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:43 Heat of formation + Delta-G solvation = -27.336502 kcal Electronic energy + Delta-G solvation = -21252.259978 eV Core-core repulsion = 17968.030326 eV Total energy + Delta-G solvation = -3284.229652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -43.54267 -40.63971 -39.21317 -35.82794 -34.44789 -34.06508 -33.01741 -31.41287 -30.33263 -27.62153 -26.74744 -25.93577 -24.05018 -22.17337 -21.96397 -21.24805 -20.68176 -18.92730 -18.52883 -17.37521 -17.30483 -17.14325 -16.64930 -16.19744 -15.91960 -15.65462 -15.15339 -14.62670 -14.32438 -14.03461 -13.95998 -13.80099 -13.74399 -13.64894 -13.42770 -13.04242 -12.87902 -12.71607 -12.67057 -11.99777 -11.88815 -11.70117 -11.47690 -11.39680 -11.20568 -10.86184 -10.70743 -10.15481 -9.53555 -8.87806 -7.90007 -5.27417 0.34679 1.02641 1.42180 1.44731 1.53882 1.87890 2.10938 2.30914 2.48350 3.29443 3.57509 3.67119 3.74809 3.93224 3.99109 4.07210 4.26343 4.39758 4.43557 4.53299 4.58685 4.72914 4.75056 4.76951 4.90710 4.96673 5.00373 5.11551 5.14739 5.21070 5.33144 5.39659 5.46646 5.55418 5.66952 5.78471 6.00631 6.22123 6.55546 7.07980 7.21004 7.75048 8.40005 9.20625 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025361 B = 0.003760 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.799265 B = 7444.972237 C = 8257.143760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.006 4.006 3 C -0.198 4.198 4 C -0.264 4.264 5 C 0.577 3.423 6 O -0.596 6.596 7 N -0.699 5.699 8 C 0.129 3.871 9 C 0.148 3.852 10 H 0.054 0.946 11 C -0.114 4.114 12 C -0.133 4.133 13 C 0.171 3.829 14 N -0.612 5.612 15 C -0.239 4.239 16 H 0.075 0.925 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.971 3.029 20 H -0.268 1.268 21 H -0.295 1.295 22 H -0.287 1.287 23 C 0.050 3.950 24 O -0.172 6.172 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.149 0.851 29 H 0.416 0.584 30 H 0.036 0.964 31 H 0.033 0.967 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.037 0.963 37 H -0.010 1.010 38 H 0.248 0.752 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.516 -14.954 1.897 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.055 4.055 3 C -0.218 4.218 4 C -0.268 4.268 5 C 0.366 3.634 6 O -0.479 6.479 7 N -0.351 5.351 8 C 0.003 3.997 9 C 0.041 3.959 10 H 0.072 0.928 11 C -0.152 4.152 12 C -0.171 4.171 13 C 0.046 3.954 14 N -0.336 5.336 15 C -0.368 4.368 16 H 0.093 0.907 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.800 3.200 20 H -0.193 1.193 21 H -0.223 1.223 22 H -0.213 1.213 23 C -0.020 4.020 24 O -0.068 6.068 25 H 0.114 0.886 26 H 0.112 0.888 27 H 0.119 0.881 28 H 0.166 0.834 29 H 0.253 0.747 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.008 0.992 38 H 0.057 0.943 39 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -19.505 -14.232 1.846 24.216 hybrid contribution 0.979 1.487 -0.600 1.878 sum -18.527 -12.746 1.245 22.522 Atomic orbital electron populations 1.20529 0.81812 1.05548 1.04997 1.22878 0.95559 0.82665 1.04374 1.22628 0.90495 1.00352 1.08309 1.21421 0.93641 0.94748 1.17006 1.17835 0.83456 0.86782 0.75292 1.90764 1.87939 1.16439 1.52717 1.45620 1.04324 1.10935 1.74233 1.21740 0.83803 0.94721 0.99479 1.21362 0.84750 0.91636 0.98156 0.92805 1.22665 0.96442 1.00335 0.95747 1.22888 0.96105 0.96773 1.01329 1.21303 0.94461 0.92016 0.87584 1.44769 1.15669 1.47949 1.25202 1.19330 1.13187 1.09462 0.94841 0.90683 1.25667 0.99642 1.00471 0.99617 1.70147 1.22627 1.39287 1.27247 0.85123 0.77635 0.78509 0.78781 1.19296 1.22252 1.21337 1.25111 0.84992 0.94515 0.97409 1.83767 1.16661 1.35484 1.70868 0.88556 0.88774 0.88119 0.83350 0.74669 0.94574 0.94875 0.91557 0.87084 0.90982 0.89832 0.94411 0.99191 0.94301 0.72790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.40 71.24 0.74 0.09 16 2 C -0.01 -0.11 7.28 24.76 0.18 0.07 16 3 C -0.20 -4.82 10.90 23.65 0.26 -4.56 16 4 C -0.26 -6.78 6.31 -18.99 -0.12 -6.90 16 5 C 0.58 19.65 7.81 86.65 0.68 20.32 16 6 O -0.60 -26.97 16.98 -4.10 -0.07 -27.04 16 7 N -0.70 -20.53 5.40 -466.41 -2.52 -23.05 16 8 C 0.13 5.09 5.09 86.38 0.44 5.53 16 9 C 0.15 5.59 3.22 45.34 0.15 5.74 16 10 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 11 C -0.11 -3.28 6.07 31.83 0.19 -3.09 16 12 C -0.13 -4.43 7.10 32.03 0.23 -4.21 16 13 C 0.17 8.29 5.42 86.86 0.47 8.77 16 14 N -0.61 -30.76 3.13 -668.26 -2.09 -32.85 16 15 C -0.24 -13.49 9.73 84.03 0.82 -12.67 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.06 -3.49 5.47 84.86 0.46 -3.03 16 18 N -0.94 -57.47 10.54 21.65 0.23 -57.24 16 19 Si 0.97 47.10 29.55 68.60 2.03 49.13 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 C 0.05 0.82 11.61 67.39 0.78 1.60 16 24 O -0.17 -2.97 10.52 4.53 0.05 -2.93 16 25 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 29 H 0.42 8.04 7.22 -92.71 -0.67 7.37 16 30 H 0.04 1.61 8.04 -2.39 -0.02 1.59 16 31 H 0.03 1.56 7.86 -2.39 -0.02 1.54 16 32 H 0.07 1.92 7.78 -2.39 -0.02 1.90 16 33 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.25 8.14 -2.39 -0.02 2.24 16 35 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 36 H 0.04 2.07 6.86 -2.39 -0.02 2.05 16 37 H -0.01 -0.54 8.08 -2.39 -0.02 -0.56 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.26 1.55 7.47 -2.91 -0.02 1.53 16 Total: -1.00 -80.46 328.36 3.29 -77.17 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.38 Total: 9.14 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.28 Total: 7.67 kcal Atomic # 7 Polarization: -108.76 SS G_CDS: -4.38 Total: -113.14 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.02 Total: -29.96 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -80.46 3.29 -77.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027848740.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.831 kcal (2) G-P(sol) polarization free energy of solvation -80.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds