Wall clock time and date at job start Tue Mar 31 2020 01:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35124 * 126.44238 * 2 1 4 4 O 1.33934 * 108.76564 * 179.75541 * 3 2 1 5 5 C 1.34913 * 109.38321 * 0.41019 * 4 3 2 6 6 C 1.46662 * 125.98292 * 179.86380 * 5 4 3 7 7 O 1.21700 * 119.99428 * 179.68432 * 6 5 4 8 8 N 1.34774 * 120.00253 * 359.68174 * 6 5 4 9 9 C 1.46499 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47218 * 184.89251 * 9 8 6 11 11 H 1.09004 * 109.99158 * 304.36846 * 10 9 8 12 12 C 1.54321 * 109.88808 * 65.46334 * 10 9 8 13 13 C 1.55154 * 102.94375 * 141.61211 * 12 10 9 14 14 C 1.54918 * 101.58265 * 324.50276 * 13 12 10 15 15 N 1.47025 * 109.88398 * 183.28018 * 10 9 8 16 16 C 1.36935 * 125.65223 * 61.67939 * 15 10 9 17 17 H 1.08001 * 119.99496 * 14.66974 * 16 15 10 18 18 C 1.38812 * 120.00017 * 194.67116 * 16 15 10 19 19 N 1.31616 * 120.00110 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99713 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46954 * 60.00142 * 20 18 16 22 22 H 1.48505 * 109.46897 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47040 * 299.99704 * 20 18 16 24 24 C 1.36537 * 108.02252 * 359.59307 * 5 4 3 25 25 H 1.09006 * 109.46866 * 269.99619 * 1 2 3 26 26 H 1.09002 * 109.47298 * 29.99895 * 1 2 3 27 27 H 1.08998 * 109.47232 * 149.99578 * 1 2 3 28 28 H 1.07996 * 125.62196 * 0.03665 * 3 2 1 29 29 H 0.97000 * 120.00164 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.47580 * 64.88614 * 9 8 6 31 31 H 1.09004 * 109.46856 * 304.88876 * 9 8 6 32 32 H 1.08997 * 110.71578 * 23.25156 * 12 10 9 33 33 H 1.08989 * 110.72314 * 259.97721 * 12 10 9 34 34 H 1.08995 * 111.00503 * 82.57070 * 13 12 10 35 35 H 1.09003 * 111.00715 * 206.43035 * 13 12 10 36 36 H 1.09001 * 110.36888 * 155.84604 * 14 13 12 37 37 H 1.09000 * 110.36394 * 278.05943 * 14 13 12 38 38 H 0.96998 * 120.00130 * 180.02562 * 19 18 16 39 39 H 1.08008 * 126.64017 * 180.26818 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6803 0.0054 5 6 3.6260 -0.6682 -0.0001 6 6 4.8379 -1.4941 0.0003 7 8 4.7470 -2.7078 0.0007 8 7 6.0521 -0.9092 0.0002 9 6 7.2626 -1.7343 0.0001 10 6 8.4935 -0.8340 0.1230 11 1 8.4915 -0.0893 -0.6730 12 6 8.4958 -0.1327 1.4977 13 6 9.9967 -0.1435 1.8908 14 6 10.4607 -1.5025 1.3097 15 7 9.7167 -1.6459 0.0450 16 6 10.1017 -2.4084 -1.0253 17 1 9.6267 -2.2702 -1.9854 18 6 11.1024 -3.3588 -0.8763 19 7 11.6815 -3.5268 0.2936 20 14 11.6271 -4.3994 -2.3363 21 1 12.1298 -3.5157 -3.4187 22 1 12.7049 -5.3314 -1.9180 23 1 10.4640 -5.1778 -2.8327 24 6 2.3408 -1.1291 -0.0001 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.9771 2.1145 0.0006 29 1 6.1245 0.0581 0.0002 30 1 7.3172 -2.2994 -0.9304 31 1 7.2318 -2.4247 0.8431 32 1 7.9042 -0.6964 2.2190 33 1 8.1275 0.8892 1.4099 34 1 10.5292 0.6840 1.4221 35 1 10.1171 -0.1201 2.9739 36 1 11.5338 -1.4870 1.1188 37 1 10.2095 -2.3131 1.9936 38 1 12.3810 -4.1907 0.3976 39 1 2.0266 -2.1625 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028088389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:13 Heat of formation + Delta-G solvation = -3.842727 kcal Electronic energy + Delta-G solvation = -21308.742971 eV Core-core repulsion = 18025.532085 eV Total energy + Delta-G solvation = -3283.210886 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.81114 -39.29346 -37.60315 -34.66600 -34.08270 -32.48967 -30.83168 -29.64881 -28.74714 -27.40804 -25.07879 -24.23631 -22.57201 -21.23341 -20.33227 -19.91387 -19.39120 -17.99306 -16.79149 -16.48083 -16.21234 -15.85600 -14.90512 -14.69434 -14.38178 -13.91105 -13.73829 -13.50659 -13.44226 -13.12236 -13.01690 -12.78191 -12.10883 -11.94125 -11.89157 -11.75415 -11.33904 -10.95551 -10.77683 -10.28020 -10.20838 -10.09955 -9.89345 -9.86374 -9.81600 -9.70043 -8.90342 -8.62552 -8.55749 -6.85271 -5.77441 -3.14410 1.02079 2.15988 2.62926 3.29808 3.37571 3.42758 3.45625 3.47072 4.47344 4.57611 4.60694 4.76839 5.16383 5.32057 5.33628 5.39227 5.44924 5.51575 5.57020 5.61419 5.74160 5.80456 5.80688 6.03481 6.11209 6.23197 6.24315 6.44647 6.51150 6.54819 6.65957 6.71606 6.79950 7.03558 7.50580 7.60053 7.68830 7.78367 8.23785 8.29283 9.16550 9.77009 10.44354 11.34486 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.003781 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.901327 B = 7404.226589 C = 8140.068050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.195 4.195 3 C -0.017 4.017 4 O -0.162 6.162 5 C -0.065 4.065 6 C 0.593 3.407 7 O -0.522 6.522 8 N -0.709 5.709 9 C 0.107 3.893 10 C 0.152 3.848 11 H 0.039 0.961 12 C -0.127 4.127 13 C -0.148 4.148 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.236 4.236 17 H 0.076 0.924 18 C 0.000 4.000 19 N -0.915 5.915 20 Si 0.911 3.089 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C -0.126 4.126 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.207 0.793 29 H 0.401 0.599 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.026 0.974 38 H 0.255 0.745 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.571 11.408 1.727 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.196 4.196 3 C -0.086 4.086 4 O -0.057 6.057 5 C -0.117 4.117 6 C 0.378 3.622 7 O -0.400 6.400 8 N -0.359 5.359 9 C -0.018 4.018 10 C 0.043 3.957 11 H 0.056 0.944 12 C -0.165 4.165 13 C -0.187 4.187 14 C 0.047 3.953 15 N -0.312 5.312 16 C -0.365 4.365 17 H 0.093 0.907 18 C -0.198 4.198 19 N -0.561 5.561 20 Si 0.741 3.259 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.147 4.147 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.224 0.776 29 H 0.235 0.765 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.044 0.956 38 H 0.065 0.935 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -17.102 10.509 1.691 20.144 hybrid contribution 0.058 -0.225 -0.727 0.763 sum -17.044 10.284 0.964 19.929 Atomic orbital electron populations 1.20172 0.88743 1.02774 1.02249 1.20477 0.97632 0.92496 1.09011 1.24147 0.80076 0.99935 1.04463 1.84068 1.29239 1.21867 1.70520 1.22325 0.96499 0.80364 1.12533 1.16626 0.81391 0.86428 0.77789 1.90898 1.85902 1.12245 1.50947 1.46084 1.05812 1.10933 1.73058 1.22373 0.81954 0.94550 1.02906 1.21136 0.86763 0.92565 0.95225 0.94366 1.22614 0.97736 0.99103 0.97050 1.23008 0.95229 1.00998 0.99474 1.21460 0.97456 0.90195 0.86150 1.44481 1.17571 1.54084 1.15093 1.18945 1.17454 1.11928 0.88146 0.90666 1.24921 0.99746 0.98171 0.96922 1.69925 1.27823 1.36404 1.21949 0.86220 0.77994 0.80143 0.81538 1.21051 1.21545 1.20902 1.21835 0.90627 1.00542 1.01710 0.91325 0.91540 0.91313 0.77619 0.76513 0.91052 0.91190 0.91801 0.92333 0.92276 0.92310 0.90943 0.95552 0.93512 0.82369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16 2 C -0.19 -1.92 6.14 -104.93 -0.64 -2.56 16 3 C -0.02 -0.15 12.00 29.62 0.36 0.21 16 4 O -0.16 -1.93 10.40 4.99 0.05 -1.87 16 5 C -0.06 -0.91 7.13 -36.80 -0.26 -1.17 16 6 C 0.59 10.07 7.79 -12.86 -0.10 9.97 16 7 O -0.52 -10.74 16.86 5.19 0.09 -10.65 16 8 N -0.71 -11.35 5.34 -61.63 -0.33 -11.68 16 9 C 0.11 2.09 5.08 -4.04 -0.02 2.07 16 10 C 0.15 3.01 3.21 -66.95 -0.21 2.80 16 11 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 12 C -0.13 -2.14 6.14 -24.90 -0.15 -2.29 16 13 C -0.15 -2.72 7.09 -24.58 -0.17 -2.90 16 14 C 0.17 4.10 5.41 -2.52 -0.01 4.09 16 15 N -0.59 -14.61 3.13 -162.57 -0.51 -15.12 16 16 C -0.24 -6.48 9.74 -15.06 -0.15 -6.63 16 17 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 18 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 19 N -0.92 -26.63 10.58 55.49 0.59 -26.05 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.13 -1.59 10.57 -39.40 -0.42 -2.01 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.21 0.96 8.06 -52.49 -0.42 0.54 16 29 H 0.40 5.37 8.11 -40.82 -0.33 5.04 16 30 H 0.07 1.56 7.90 -51.93 -0.41 1.15 16 31 H 0.07 1.51 8.06 -51.93 -0.42 1.09 16 32 H 0.06 1.07 7.80 -51.93 -0.40 0.67 16 33 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 37 H 0.03 0.68 8.06 -51.93 -0.42 0.27 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.16 1.91 8.06 -52.48 -0.42 1.49 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -32.05 329.44 -7.38 -39.43 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.69 Total: 2.60 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: -1.51 Total: 1.29 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.25 Total: -52.85 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.14 Total: -12.53 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.05 -7.38 -39.43 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028088389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.583 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds