Wall clock time and date at job start Tue Mar 31 2020 01:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35124 * 126.44238 * 2 1 4 4 O 1.33934 * 108.76564 * 179.75541 * 3 2 1 5 5 C 1.34913 * 109.38321 * 0.41019 * 4 3 2 6 6 C 1.46662 * 125.98292 * 179.86380 * 5 4 3 7 7 O 1.21700 * 119.99428 * 179.68432 * 6 5 4 8 8 N 1.34774 * 120.00253 * 359.68174 * 6 5 4 9 9 C 1.46499 * 119.99969 * 180.02562 * 8 6 5 10 10 C 1.52995 * 109.47218 * 184.89251 * 9 8 6 11 11 H 1.09004 * 109.99158 * 304.36846 * 10 9 8 12 12 C 1.54321 * 109.88808 * 65.46334 * 10 9 8 13 13 C 1.55154 * 102.94375 * 141.61211 * 12 10 9 14 14 C 1.54918 * 101.58265 * 324.50276 * 13 12 10 15 15 N 1.47025 * 109.88398 * 183.28018 * 10 9 8 16 16 C 1.36935 * 125.65223 * 61.67939 * 15 10 9 17 17 H 1.08001 * 119.99496 * 14.66974 * 16 15 10 18 18 C 1.38812 * 120.00017 * 194.67116 * 16 15 10 19 19 N 1.31616 * 120.00110 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99713 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46954 * 60.00142 * 20 18 16 22 22 H 1.48505 * 109.46897 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47040 * 299.99704 * 20 18 16 24 24 C 1.36537 * 108.02252 * 359.59307 * 5 4 3 25 25 H 1.09006 * 109.46866 * 269.99619 * 1 2 3 26 26 H 1.09002 * 109.47298 * 29.99895 * 1 2 3 27 27 H 1.08998 * 109.47232 * 149.99578 * 1 2 3 28 28 H 1.07996 * 125.62196 * 0.03665 * 3 2 1 29 29 H 0.97000 * 120.00164 * 0.02562 * 8 6 5 30 30 H 1.08998 * 109.47580 * 64.88614 * 9 8 6 31 31 H 1.09004 * 109.46856 * 304.88876 * 9 8 6 32 32 H 1.08997 * 110.71578 * 23.25156 * 12 10 9 33 33 H 1.08989 * 110.72314 * 259.97721 * 12 10 9 34 34 H 1.08995 * 111.00503 * 82.57070 * 13 12 10 35 35 H 1.09003 * 111.00715 * 206.43035 * 13 12 10 36 36 H 1.09001 * 110.36888 * 155.84604 * 14 13 12 37 37 H 1.09000 * 110.36394 * 278.05943 * 14 13 12 38 38 H 0.96998 * 120.00130 * 180.02562 * 19 18 16 39 39 H 1.08008 * 126.64017 * 180.26818 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6803 0.0054 5 6 3.6260 -0.6682 -0.0001 6 6 4.8379 -1.4941 0.0003 7 8 4.7470 -2.7078 0.0007 8 7 6.0521 -0.9092 0.0002 9 6 7.2626 -1.7343 0.0001 10 6 8.4935 -0.8340 0.1230 11 1 8.4915 -0.0893 -0.6730 12 6 8.4958 -0.1327 1.4977 13 6 9.9967 -0.1435 1.8908 14 6 10.4607 -1.5025 1.3097 15 7 9.7167 -1.6459 0.0450 16 6 10.1017 -2.4084 -1.0253 17 1 9.6267 -2.2702 -1.9854 18 6 11.1024 -3.3588 -0.8763 19 7 11.6815 -3.5268 0.2936 20 14 11.6271 -4.3994 -2.3363 21 1 12.1298 -3.5157 -3.4187 22 1 12.7049 -5.3314 -1.9180 23 1 10.4640 -5.1778 -2.8327 24 6 2.3408 -1.1291 -0.0001 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5139 28 1 1.9771 2.1145 0.0006 29 1 6.1245 0.0581 0.0002 30 1 7.3172 -2.2994 -0.9304 31 1 7.2318 -2.4247 0.8431 32 1 7.9042 -0.6964 2.2190 33 1 8.1275 0.8892 1.4099 34 1 10.5292 0.6840 1.4221 35 1 10.1171 -0.1201 2.9739 36 1 11.5338 -1.4870 1.1188 37 1 10.2095 -2.3131 1.9936 38 1 12.3810 -4.1907 0.3976 39 1 2.0266 -2.1625 0.0002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028088389.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:12 Heat of formation + Delta-G solvation = -25.528864 kcal Electronic energy + Delta-G solvation = -21309.683352 eV Core-core repulsion = 18025.532085 eV Total energy + Delta-G solvation = -3284.151267 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.69387 -40.71537 -39.26646 -35.99042 -35.09526 -34.41916 -31.94254 -31.34701 -30.30302 -28.15094 -26.78411 -25.92787 -23.84933 -22.18896 -22.00077 -21.34073 -20.80718 -19.14752 -18.55189 -17.48268 -17.41369 -17.21893 -16.68453 -16.19721 -15.91698 -15.68114 -14.95340 -14.66129 -14.39508 -14.09149 -13.98043 -13.92630 -13.67021 -13.51221 -13.43291 -13.02196 -12.88027 -12.66460 -12.54443 -12.06819 -11.92760 -11.77031 -11.52433 -11.46774 -11.41616 -10.74377 -10.68672 -10.27590 -9.53803 -8.88126 -7.89684 -5.27777 0.00778 1.34694 1.43853 1.47433 1.53010 1.63429 2.06155 2.17641 2.49249 3.29739 3.60555 3.76661 3.83115 3.92815 3.95170 4.06784 4.23660 4.34902 4.41167 4.51245 4.67039 4.69730 4.89557 4.90512 4.94365 4.97377 5.04757 5.09231 5.11524 5.15237 5.25980 5.45107 5.51103 5.53123 5.65040 5.76929 5.84031 6.21337 6.43008 6.98940 7.07702 7.74262 8.40350 9.21086 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026018 B = 0.003781 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.901327 B = 7404.226589 C = 8140.068050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.010 3.990 4 O -0.165 6.165 5 C -0.099 4.099 6 C 0.593 3.407 7 O -0.571 6.571 8 N -0.695 5.695 9 C 0.127 3.873 10 C 0.148 3.852 11 H 0.053 0.947 12 C -0.114 4.114 13 C -0.133 4.133 14 C 0.173 3.827 15 N -0.610 5.610 16 C -0.244 4.244 17 H 0.077 0.923 18 C -0.058 4.058 19 N -0.945 5.945 20 Si 0.973 3.027 21 H -0.273 1.273 22 H -0.293 1.293 23 H -0.282 1.282 24 C -0.126 4.126 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.066 0.934 28 H 0.257 0.743 29 H 0.417 0.583 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.037 0.963 37 H -0.008 1.008 38 H 0.248 0.752 39 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.927 14.604 1.537 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.209 4.209 3 C -0.059 4.059 4 O -0.060 6.060 5 C -0.151 4.151 6 C 0.381 3.619 7 O -0.452 6.452 8 N -0.346 5.346 9 C 0.001 3.999 10 C 0.041 3.959 11 H 0.071 0.929 12 C -0.152 4.152 13 C -0.171 4.171 14 C 0.048 3.952 15 N -0.334 5.334 16 C -0.373 4.373 17 H 0.095 0.905 18 C -0.252 4.252 19 N -0.593 5.593 20 Si 0.801 3.199 21 H -0.199 1.199 22 H -0.219 1.219 23 H -0.208 1.208 24 C -0.147 4.147 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.273 0.727 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.122 0.878 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.010 0.990 38 H 0.058 0.942 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.487 13.767 1.494 23.906 hybrid contribution 0.629 -1.124 -0.674 1.454 sum -18.858 12.643 0.820 22.719 Atomic orbital electron populations 1.20259 0.86407 1.03899 1.03188 1.20848 0.99242 0.91515 1.09257 1.25180 0.78576 1.01737 1.00452 1.84053 1.30907 1.20379 1.70675 1.21608 0.95264 0.81438 1.16771 1.16956 0.82250 0.86230 0.76474 1.90862 1.86752 1.14472 1.53134 1.45766 1.04577 1.11330 1.72927 1.21834 0.83660 0.94298 1.00112 1.21332 0.84700 0.92022 0.97854 0.92933 1.22604 0.96777 1.01156 0.94647 1.22874 0.95991 0.97462 1.00766 1.21279 0.95598 0.92620 0.85672 1.44742 1.19880 1.54155 1.14666 1.19278 1.16908 1.11918 0.89195 0.90518 1.25700 1.00402 0.99721 0.99412 1.70129 1.28418 1.36991 1.23723 0.85246 0.77273 0.78529 0.78863 1.19862 1.21883 1.20828 1.22089 0.90902 1.01452 1.00228 0.90421 0.89175 0.91523 0.72741 0.74568 0.94169 0.93893 0.91764 0.87823 0.90983 0.89847 0.94442 0.98971 0.94239 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 71.24 0.74 -0.05 16 2 C -0.21 -3.43 6.14 -20.07 -0.12 -3.56 16 3 C 0.01 0.13 12.00 67.10 0.81 0.94 16 4 O -0.16 -3.44 10.40 -5.07 -0.05 -3.49 16 5 C -0.10 -2.69 7.13 24.07 0.17 -2.52 16 6 C 0.59 20.45 7.79 86.44 0.67 21.13 16 7 O -0.57 -24.60 16.86 -4.35 -0.07 -24.68 16 8 N -0.70 -22.02 5.34 -467.10 -2.49 -24.51 16 9 C 0.13 5.09 5.08 86.38 0.44 5.53 16 10 C 0.15 5.80 3.21 45.34 0.15 5.94 16 11 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 12 C -0.11 -3.55 6.14 31.78 0.20 -3.36 16 13 C -0.13 -4.62 7.09 31.99 0.23 -4.39 16 14 C 0.17 8.49 5.41 86.86 0.47 8.96 16 15 N -0.61 -30.97 3.13 -668.24 -2.09 -33.06 16 16 C -0.24 -13.73 9.74 84.03 0.82 -12.92 16 17 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 18 C -0.06 -3.37 5.47 84.86 0.46 -2.91 16 19 N -0.95 -57.42 10.58 21.65 0.23 -57.19 16 20 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 24 C -0.13 -3.04 10.57 22.39 0.24 -2.80 16 25 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 26 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.26 0.73 8.06 -2.91 -0.02 0.71 16 29 H 0.42 10.35 8.11 -92.71 -0.75 9.59 16 30 H 0.04 1.84 7.90 -2.39 -0.02 1.83 16 31 H 0.04 1.94 8.06 -2.38 -0.02 1.92 16 32 H 0.06 2.02 7.80 -2.39 -0.02 2.00 16 33 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.04 2.06 6.93 -2.39 -0.02 2.05 16 37 H -0.01 -0.43 8.06 -2.39 -0.02 -0.45 16 38 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 39 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -74.77 329.44 3.11 -71.66 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.30 Total: 12.53 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 5.26 Total: 9.99 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -4.35 Total: -114.76 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.13 Total: -28.17 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -74.77 3.11 -71.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028088389.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.136 kcal (2) G-P(sol) polarization free energy of solvation -74.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds