Wall clock time and date at job start Tue Mar 31 2020 01:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35128 * 126.43938 * 2 1 4 4 O 1.33932 * 108.76455 * 179.76687 * 3 2 1 5 5 C 1.34915 * 109.38325 * 0.37966 * 4 3 2 6 6 C 1.46661 * 125.98408 * 179.88185 * 5 4 3 7 7 O 1.21698 * 119.99775 * 179.69073 * 6 5 4 8 8 N 1.34769 * 120.00261 * 359.69377 * 6 5 4 9 9 C 1.46503 * 120.00209 * 180.27559 * 8 6 5 10 10 C 1.52991 * 109.47283 * 186.20190 * 9 8 6 11 11 H 1.08998 * 109.87460 * 300.87687 * 10 9 8 12 12 C 1.54323 * 109.88320 * 179.86361 * 10 9 8 13 13 C 1.55158 * 102.94313 * 218.38744 * 12 10 9 14 14 C 1.54902 * 101.58090 * 35.50363 * 13 12 10 15 15 N 1.47023 * 109.88705 * 62.05564 * 10 9 8 16 16 C 1.36940 * 125.64472 * 298.34029 * 15 10 9 17 17 H 1.08000 * 119.99750 * 335.93761 * 16 15 10 18 18 C 1.38809 * 119.99791 * 155.94528 * 16 15 10 19 19 N 1.31624 * 120.00082 * 159.30903 * 18 16 15 20 20 Si 1.86806 * 120.00177 * 339.30176 * 18 16 15 21 21 H 1.48501 * 109.46923 * 84.84649 * 20 18 16 22 22 H 1.48503 * 109.47075 * 204.84440 * 20 18 16 23 23 H 1.48502 * 109.46858 * 324.84424 * 20 18 16 24 24 C 1.36538 * 108.02605 * 359.62532 * 5 4 3 25 25 H 1.09000 * 109.47047 * 269.99979 * 1 2 3 26 26 H 1.09003 * 109.47299 * 30.00316 * 1 2 3 27 27 H 1.09005 * 109.47136 * 149.99895 * 1 2 3 28 28 H 1.08001 * 125.62347 * 359.97438 * 3 2 1 29 29 H 0.97003 * 120.00358 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46469 * 306.20005 * 9 8 6 31 31 H 1.08998 * 109.47144 * 66.19516 * 9 8 6 32 32 H 1.08996 * 110.72303 * 336.75085 * 12 10 9 33 33 H 1.09002 * 110.72404 * 100.02545 * 12 10 9 34 34 H 1.09006 * 111.00488 * 153.57409 * 13 12 10 35 35 H 1.08994 * 111.00560 * 277.42463 * 13 12 10 36 36 H 1.08997 * 110.37334 * 81.82901 * 14 13 12 37 37 H 1.09005 * 110.36985 * 204.04369 * 14 13 12 38 38 H 0.97001 * 120.00066 * 179.97438 * 19 18 16 39 39 H 1.07997 * 126.64675 * 180.19293 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0052 5 6 3.6260 -0.6681 0.0001 6 6 4.8379 -1.4940 0.0009 7 8 4.7472 -2.7076 0.0016 8 7 6.0521 -0.9091 0.0008 9 6 7.2627 -1.7342 -0.0046 10 6 8.4920 -0.8370 0.1523 11 1 8.5300 -0.1146 -0.6630 12 6 9.7731 -1.6973 0.1513 13 6 10.6618 -0.9985 1.2140 14 6 9.6052 -0.5385 2.2491 15 7 8.4380 -0.1360 1.4435 16 6 7.4648 0.7451 1.8331 17 1 6.8860 1.2735 1.0901 18 6 7.2226 0.9592 3.1831 19 7 6.6107 2.0563 3.5760 20 14 7.7647 -0.3099 4.4421 21 1 9.1859 -0.0740 4.8023 22 1 6.9200 -0.1931 5.6579 23 1 7.6190 -1.6712 3.8670 24 6 2.3408 -1.1291 0.0000 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.9770 2.1146 -0.0004 29 1 6.1245 0.0582 -0.0001 30 1 7.2225 -2.4434 0.8222 31 1 7.3276 -2.2780 -0.9470 32 1 9.5499 -2.7219 0.4487 33 1 10.2524 -1.6745 -0.8275 34 1 11.3646 -1.7025 1.6597 35 1 11.1859 -0.1447 0.7847 36 1 9.3419 -1.3612 2.9138 37 1 9.9810 0.3077 2.8244 38 1 6.4411 2.2058 4.5193 39 1 2.0267 -2.1624 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028088390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:17 Heat of formation + Delta-G solvation = 0.925981 kcal Electronic energy + Delta-G solvation = -22135.043481 eV Core-core repulsion = 18852.039382 eV Total energy + Delta-G solvation = -3283.004099 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -42.39768 -39.09771 -37.83565 -34.31378 -33.73724 -32.67399 -30.53868 -30.01351 -29.29875 -27.15767 -25.16327 -24.06191 -22.39602 -21.01535 -20.80666 -19.80176 -19.13580 -17.68336 -16.83308 -16.11461 -15.92596 -15.69472 -15.27984 -15.08994 -14.27253 -13.62673 -13.43485 -13.37481 -13.14878 -13.02211 -12.79127 -12.66439 -12.56949 -12.42051 -11.71814 -11.61300 -11.33420 -11.20033 -10.96650 -10.76503 -10.53353 -10.07810 -10.00075 -9.78354 -9.48979 -9.48135 -8.74827 -8.55600 -8.21568 -7.08633 -6.02048 -3.36323 1.42095 2.52363 3.06049 3.32105 3.46646 3.50646 3.62107 3.79883 4.50380 4.86295 4.92378 4.99016 5.10596 5.17821 5.22799 5.36539 5.48188 5.55002 5.61634 5.76124 5.83486 5.87094 5.89070 6.05181 6.07302 6.08693 6.17495 6.22700 6.28419 6.36044 6.59225 6.62836 6.75145 6.80109 6.94856 7.16870 7.66094 8.07705 8.23346 8.61309 8.74757 9.61350 10.12358 11.13124 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.006053 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.433418 B = 4625.027758 C = 5491.253667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.202 4.202 3 C -0.009 4.009 4 O -0.149 6.149 5 C -0.058 4.058 6 C 0.595 3.405 7 O -0.544 6.544 8 N -0.687 5.687 9 C 0.112 3.888 10 C 0.144 3.856 11 H 0.051 0.949 12 C -0.123 4.123 13 C -0.131 4.131 14 C 0.112 3.888 15 N -0.602 5.602 16 C -0.244 4.244 17 H 0.089 0.911 18 C 0.032 3.968 19 N -0.902 5.902 20 Si 0.883 3.117 21 H -0.285 1.285 22 H -0.303 1.303 23 H -0.275 1.275 24 C -0.133 4.133 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.206 0.794 29 H 0.415 0.585 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.023 0.977 37 H 0.058 0.942 38 H 0.264 0.736 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.798 -3.507 -8.521 9.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.203 4.203 3 C -0.080 4.080 4 O -0.043 6.043 5 C -0.111 4.111 6 C 0.381 3.619 7 O -0.425 6.425 8 N -0.338 5.338 9 C -0.013 4.013 10 C 0.037 3.963 11 H 0.068 0.932 12 C -0.161 4.161 13 C -0.169 4.169 14 C -0.013 4.013 15 N -0.327 5.327 16 C -0.371 4.371 17 H 0.106 0.894 18 C -0.168 4.168 19 N -0.544 5.544 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.231 1.231 23 H -0.201 1.201 24 C -0.154 4.154 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.255 0.745 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.677 -3.981 -8.348 9.953 hybrid contribution -0.013 -0.253 1.066 1.096 sum -3.690 -4.234 -7.282 9.196 Atomic orbital electron populations 1.20129 0.88996 1.02385 1.02084 1.20402 0.97401 0.92528 1.10004 1.24155 0.80222 0.99905 1.03690 1.84164 1.28955 1.21626 1.69571 1.22195 0.96255 0.80658 1.12000 1.16585 0.81681 0.86211 0.77437 1.90806 1.86363 1.12434 1.52898 1.45998 1.04594 1.12015 1.71171 1.22029 0.84606 0.94188 1.00516 1.21341 0.91798 0.92348 0.90826 0.93170 1.22517 0.95478 0.98939 0.99203 1.22719 0.97247 0.99774 0.97171 1.21935 0.87561 0.97881 0.93901 1.44880 1.24174 1.49681 1.14001 1.18390 1.12508 1.14299 0.91875 0.89397 1.25083 0.97824 0.97019 0.96917 1.69813 1.44892 1.23848 1.15888 0.86945 0.77260 0.83422 0.81076 1.21181 1.23108 1.20121 1.21716 0.90642 1.00200 1.02825 0.91503 0.91701 0.91616 0.77786 0.74537 0.91541 0.92539 0.91322 0.91228 0.91688 0.91209 0.95895 0.92397 0.92665 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.39 36.01 0.37 -0.42 16 2 C -0.20 -2.82 6.14 -104.93 -0.64 -3.47 16 3 C -0.01 -0.13 12.00 29.63 0.36 0.22 16 4 O -0.15 -2.71 10.40 4.99 0.05 -2.65 16 5 C -0.06 -1.10 7.13 -36.80 -0.26 -1.36 16 6 C 0.60 12.32 7.79 -12.86 -0.10 12.22 16 7 O -0.54 -12.22 16.85 5.19 0.09 -12.13 16 8 N -0.69 -13.83 4.79 -61.63 -0.30 -14.13 16 9 C 0.11 2.11 5.18 -4.04 -0.02 2.09 16 10 C 0.14 2.65 3.33 -66.96 -0.22 2.43 16 11 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 12 C -0.12 -1.83 6.48 -24.90 -0.16 -2.00 16 13 C -0.13 -2.07 7.08 -24.59 -0.17 -2.24 16 14 C 0.11 2.35 4.74 -2.53 -0.01 2.34 16 15 N -0.60 -13.64 2.87 -162.58 -0.47 -14.10 16 16 C -0.24 -6.42 8.88 -15.06 -0.13 -6.56 16 17 H 0.09 2.41 6.55 -52.49 -0.34 2.07 16 18 C 0.03 0.89 5.44 -17.43 -0.09 0.80 16 19 N -0.90 -26.94 13.97 55.49 0.78 -26.16 16 20 Si 0.88 22.77 24.34 -169.99 -4.14 18.63 16 21 H -0.28 -7.04 6.70 56.52 0.38 -6.67 16 22 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 23 H -0.28 -7.20 6.76 56.52 0.38 -6.81 16 24 C -0.13 -2.19 10.57 -39.40 -0.42 -2.61 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.21 2.08 8.06 -52.49 -0.42 1.66 16 29 H 0.41 8.56 5.74 -40.82 -0.23 8.33 16 30 H 0.07 1.39 8.12 -51.93 -0.42 0.97 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.99 7.85 -51.93 -0.41 0.58 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.52 5.45 -51.93 -0.28 0.23 16 37 H 0.06 1.29 7.19 -51.93 -0.37 0.92 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -32.30 319.39 -6.15 -38.45 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -5.47 Total: 5.83 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -1.51 Total: 1.44 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.01 Total: -54.39 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.14 Total: -14.78 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.30 -6.15 -38.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028088390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.377 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds