Wall clock time and date at job start Tue Mar 31 2020 01:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35128 * 126.43938 * 2 1 4 4 O 1.33932 * 108.76455 * 179.76687 * 3 2 1 5 5 C 1.34915 * 109.38325 * 0.37966 * 4 3 2 6 6 C 1.46661 * 125.98408 * 179.88185 * 5 4 3 7 7 O 1.21698 * 119.99775 * 179.69073 * 6 5 4 8 8 N 1.34769 * 120.00261 * 359.69377 * 6 5 4 9 9 C 1.46503 * 120.00209 * 180.27559 * 8 6 5 10 10 C 1.52991 * 109.47283 * 186.20190 * 9 8 6 11 11 H 1.08998 * 109.87460 * 300.87687 * 10 9 8 12 12 C 1.54323 * 109.88320 * 179.86361 * 10 9 8 13 13 C 1.55158 * 102.94313 * 218.38744 * 12 10 9 14 14 C 1.54902 * 101.58090 * 35.50363 * 13 12 10 15 15 N 1.47023 * 109.88705 * 62.05564 * 10 9 8 16 16 C 1.36940 * 125.64472 * 298.34029 * 15 10 9 17 17 H 1.08000 * 119.99750 * 335.93761 * 16 15 10 18 18 C 1.38809 * 119.99791 * 155.94528 * 16 15 10 19 19 N 1.31624 * 120.00082 * 159.30903 * 18 16 15 20 20 Si 1.86806 * 120.00177 * 339.30176 * 18 16 15 21 21 H 1.48501 * 109.46923 * 84.84649 * 20 18 16 22 22 H 1.48503 * 109.47075 * 204.84440 * 20 18 16 23 23 H 1.48502 * 109.46858 * 324.84424 * 20 18 16 24 24 C 1.36538 * 108.02605 * 359.62532 * 5 4 3 25 25 H 1.09000 * 109.47047 * 269.99979 * 1 2 3 26 26 H 1.09003 * 109.47299 * 30.00316 * 1 2 3 27 27 H 1.09005 * 109.47136 * 149.99895 * 1 2 3 28 28 H 1.08001 * 125.62347 * 359.97438 * 3 2 1 29 29 H 0.97003 * 120.00358 * 359.97438 * 8 6 5 30 30 H 1.09001 * 109.46469 * 306.20005 * 9 8 6 31 31 H 1.08998 * 109.47144 * 66.19516 * 9 8 6 32 32 H 1.08996 * 110.72303 * 336.75085 * 12 10 9 33 33 H 1.09002 * 110.72404 * 100.02545 * 12 10 9 34 34 H 1.09006 * 111.00488 * 153.57409 * 13 12 10 35 35 H 1.08994 * 111.00560 * 277.42463 * 13 12 10 36 36 H 1.08997 * 110.37334 * 81.82901 * 14 13 12 37 37 H 1.09005 * 110.36985 * 204.04369 * 14 13 12 38 38 H 0.97001 * 120.00066 * 179.97438 * 19 18 16 39 39 H 1.07997 * 126.64675 * 180.19293 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 0.0052 5 6 3.6260 -0.6681 0.0001 6 6 4.8379 -1.4940 0.0009 7 8 4.7472 -2.7076 0.0016 8 7 6.0521 -0.9091 0.0008 9 6 7.2627 -1.7342 -0.0046 10 6 8.4920 -0.8370 0.1523 11 1 8.5300 -0.1146 -0.6630 12 6 9.7731 -1.6973 0.1513 13 6 10.6618 -0.9985 1.2140 14 6 9.6052 -0.5385 2.2491 15 7 8.4380 -0.1360 1.4435 16 6 7.4648 0.7451 1.8331 17 1 6.8860 1.2735 1.0901 18 6 7.2226 0.9592 3.1831 19 7 6.6107 2.0563 3.5760 20 14 7.7647 -0.3099 4.4421 21 1 9.1859 -0.0740 4.8023 22 1 6.9200 -0.1931 5.6579 23 1 7.6190 -1.6712 3.8670 24 6 2.3408 -1.1291 0.0000 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5139 27 1 -0.3634 -0.8900 -0.5139 28 1 1.9770 2.1146 -0.0004 29 1 6.1245 0.0582 -0.0001 30 1 7.2225 -2.4434 0.8222 31 1 7.3276 -2.2780 -0.9470 32 1 9.5499 -2.7219 0.4487 33 1 10.2524 -1.6745 -0.8275 34 1 11.3646 -1.7025 1.6597 35 1 11.1859 -0.1447 0.7847 36 1 9.3419 -1.3612 2.9138 37 1 9.9810 0.3077 2.8244 38 1 6.4411 2.2058 4.5193 39 1 2.0267 -2.1624 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028088390.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:17 Heat of formation + Delta-G solvation = -21.665733 kcal Electronic energy + Delta-G solvation = -22136.023131 eV Core-core repulsion = 18852.039382 eV Total energy + Delta-G solvation = -3283.983749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.67248 -40.68151 -39.41514 -35.75641 -35.03178 -34.64601 -31.90627 -31.80229 -30.69771 -28.18413 -26.71386 -25.83759 -23.90728 -22.42781 -22.10518 -21.40230 -20.56005 -19.22136 -18.54184 -17.52432 -17.29687 -17.24355 -17.02764 -16.74068 -15.78962 -15.23995 -15.14938 -14.90316 -14.39462 -14.29186 -14.12154 -14.06475 -13.93015 -13.50690 -13.43306 -13.03811 -12.82089 -12.75239 -12.54417 -12.36394 -12.12421 -11.80050 -11.63048 -11.37386 -11.28230 -10.79690 -10.71704 -10.12294 -9.51119 -9.01409 -8.18621 -5.45874 0.04771 1.23481 1.34090 1.35126 1.40392 1.75819 2.11881 2.32540 2.40279 3.09043 3.27748 3.70224 3.84349 3.84743 3.97697 4.03754 4.14922 4.29154 4.36468 4.42975 4.60867 4.65977 4.72949 4.78655 4.88637 4.92890 5.01862 5.02147 5.05515 5.09029 5.14129 5.26586 5.40573 5.48004 5.53881 5.71064 5.90315 6.10177 6.49622 6.76162 7.03570 7.54353 8.13358 9.00382 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.006053 C = 0.005098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.433418 B = 4625.027758 C = 5491.253667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.202 4.202 3 C -0.006 4.006 4 O -0.173 6.173 5 C -0.103 4.103 6 C 0.590 3.410 7 O -0.572 6.572 8 N -0.692 5.692 9 C 0.113 3.887 10 C 0.140 3.860 11 H 0.061 0.939 12 C -0.112 4.112 13 C -0.116 4.116 14 C 0.100 3.900 15 N -0.619 5.619 16 C -0.212 4.212 17 H 0.072 0.928 18 C -0.026 4.026 19 N -0.946 5.946 20 Si 0.930 3.070 21 H -0.270 1.270 22 H -0.316 1.316 23 H -0.284 1.284 24 C -0.127 4.127 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.411 0.589 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.011 0.989 37 H 0.038 0.962 38 H 0.259 0.741 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 -4.122 -10.016 11.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.203 4.203 3 C -0.075 4.075 4 O -0.068 6.068 5 C -0.155 4.155 6 C 0.377 3.623 7 O -0.455 6.455 8 N -0.341 5.341 9 C -0.012 4.012 10 C 0.033 3.967 11 H 0.079 0.921 12 C -0.151 4.151 13 C -0.155 4.155 14 C -0.025 4.025 15 N -0.345 5.345 16 C -0.341 4.341 17 H 0.089 0.911 18 C -0.221 4.221 19 N -0.593 5.593 20 Si 0.761 3.239 21 H -0.196 1.196 22 H -0.245 1.245 23 H -0.210 1.210 24 C -0.148 4.148 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.094 0.906 28 H 0.261 0.739 29 H 0.249 0.751 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.127 0.873 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.028 0.972 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -3.279 -4.632 -9.871 11.386 hybrid contribution -0.195 -0.033 1.411 1.424 sum -3.474 -4.665 -8.460 10.267 Atomic orbital electron populations 1.20253 0.85849 1.04166 1.03080 1.20859 0.99387 0.91180 1.08919 1.25111 0.78943 1.01913 1.01546 1.84133 1.31093 1.21297 1.70312 1.22013 0.96320 0.81266 1.15904 1.16868 0.82370 0.86225 0.76789 1.90761 1.86917 1.13433 1.54403 1.46082 1.05133 1.11827 1.71097 1.22073 0.84377 0.93834 1.00885 1.21604 0.93497 0.92854 0.88714 0.92128 1.22564 0.93150 0.98294 1.01059 1.22682 0.96234 1.00904 0.95632 1.22057 0.88538 0.96725 0.95159 1.45079 1.24042 1.49706 1.15668 1.18408 1.11463 1.13073 0.91116 0.91103 1.25552 0.99537 0.98403 0.98600 1.69908 1.48151 1.25562 1.15682 0.86166 0.77431 0.81270 0.79049 1.19615 1.24535 1.21020 1.22056 0.90352 1.01441 1.00917 0.90769 0.89228 0.90633 0.73865 0.75062 0.94016 0.89786 0.90530 0.87307 0.88703 0.90033 0.97156 0.94352 0.93228 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.39 71.24 0.74 -0.57 16 2 C -0.20 -5.31 6.14 -20.06 -0.12 -5.43 16 3 C -0.01 -0.16 12.00 67.10 0.81 0.65 16 4 O -0.17 -6.37 10.40 -5.06 -0.05 -6.42 16 5 C -0.10 -3.98 7.13 24.07 0.17 -3.81 16 6 C 0.59 25.13 7.79 86.44 0.67 25.80 16 7 O -0.57 -26.30 16.85 -4.34 -0.07 -26.37 16 8 N -0.69 -28.38 4.79 -467.12 -2.24 -30.61 16 9 C 0.11 4.18 5.18 86.38 0.45 4.63 16 10 C 0.14 4.86 3.33 45.34 0.15 5.01 16 11 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 12 C -0.11 -2.91 6.48 31.78 0.21 -2.70 16 13 C -0.12 -3.25 7.08 31.98 0.23 -3.02 16 14 C 0.10 4.05 4.74 86.85 0.41 4.46 16 15 N -0.62 -27.75 2.87 -668.29 -1.91 -29.66 16 16 C -0.21 -11.36 8.88 84.03 0.75 -10.61 16 17 H 0.07 4.01 6.55 -2.91 -0.02 3.99 16 18 C -0.03 -1.48 5.44 84.86 0.46 -1.02 16 19 N -0.95 -58.45 13.97 21.65 0.30 -58.14 16 20 Si 0.93 48.28 24.34 68.60 1.67 49.95 16 21 H -0.27 -13.14 6.70 99.48 0.67 -12.48 16 22 H -0.32 -16.92 7.11 99.48 0.71 -16.21 16 23 H -0.28 -14.89 6.76 99.48 0.67 -14.22 16 24 C -0.13 -4.15 10.57 22.39 0.24 -3.91 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.25 4.28 8.06 -2.91 -0.02 4.25 16 29 H 0.41 17.45 5.74 -92.71 -0.53 16.92 16 30 H 0.04 1.74 8.12 -2.39 -0.02 1.73 16 31 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 32 H 0.08 1.90 7.85 -2.39 -0.02 1.88 16 33 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.09 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.01 0.47 5.45 -2.39 -0.01 0.45 16 37 H 0.04 1.69 7.19 -2.38 -0.02 1.67 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.16 4.90 8.06 -2.91 -0.02 4.88 16 Total: -1.00 -73.22 319.39 3.30 -69.92 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.45 Total: 21.86 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 5.15 Total: 9.47 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -3.85 Total: -118.42 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.13 Total: -32.79 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.67 Total: 49.95 kcal Total: -73.22 3.30 -69.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028088390.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.257 kcal (2) G-P(sol) polarization free energy of solvation -73.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds