Wall clock time and date at job start Tue Mar 31 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35135 * 125.61176 * 2 1 4 4 C 1.40367 * 107.10853 * 180.02562 * 3 2 1 5 5 C 1.36542 * 106.71059 * 0.02562 * 4 3 2 6 6 C 1.46655 * 125.98780 * 179.73683 * 5 4 3 7 7 O 1.21698 * 120.00031 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00228 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00260 * 179.97438 * 8 6 5 10 10 C 1.52991 * 109.47353 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.88894 * 54.29830 * 10 9 8 12 12 C 1.55153 * 111.00801 * 178.17747 * 10 9 8 13 13 C 1.54324 * 102.94642 * 153.57644 * 12 10 9 14 14 N 1.47027 * 107.27096 * 337.80861 * 13 12 10 15 15 C 1.36925 * 125.64985 * 178.97429 * 14 13 12 16 16 H 1.08004 * 120.00061 * 174.79246 * 15 14 13 17 17 C 1.38810 * 120.00158 * 354.79084 * 15 14 13 18 18 N 1.31620 * 120.00268 * 7.05379 * 17 15 14 19 19 Si 1.86805 * 120.00305 * 187.05423 * 17 15 14 20 20 H 1.48507 * 109.46891 * 94.98463 * 19 17 15 21 21 H 1.48496 * 109.47277 * 214.98751 * 19 17 15 22 22 H 1.48507 * 109.46902 * 334.98869 * 19 17 15 23 23 C 1.47471 * 108.71888 * 358.97710 * 14 13 12 24 24 O 1.33926 * 125.61938 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47137 * 90.00283 * 1 2 3 26 26 H 1.08992 * 109.47494 * 209.99932 * 1 2 3 27 27 H 1.09003 * 109.47166 * 330.00380 * 1 2 3 28 28 H 1.07993 * 126.44955 * 0.05772 * 3 2 1 29 29 H 1.08001 * 126.64172 * 180.02562 * 4 3 2 30 30 H 0.96995 * 119.99838 * 359.97438 * 8 6 5 31 31 H 1.09002 * 109.47100 * 299.99754 * 9 8 6 32 32 H 1.09004 * 109.47379 * 59.99409 * 9 8 6 33 33 H 1.09000 * 110.72241 * 271.94420 * 12 10 9 34 34 H 1.09004 * 110.72317 * 35.03452 * 12 10 9 35 35 H 1.09000 * 109.88277 * 97.22321 * 13 12 10 36 36 H 1.08998 * 109.88644 * 218.23687 * 13 12 10 37 37 H 0.96993 * 120.00476 * 179.97438 * 18 17 15 38 38 H 1.09003 * 110.34590 * 265.24907 * 23 14 13 39 39 H 1.08998 * 110.40607 * 142.92151 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 3.5823 -0.7116 -0.0015 6 6 4.7414 -1.6101 -0.0078 7 8 5.8680 -1.1498 -0.0134 8 7 4.5589 -2.9454 -0.0086 9 6 5.7168 -3.8429 -0.0155 10 6 5.2362 -5.2954 -0.0142 11 1 4.5456 -5.4770 -0.8378 12 6 6.4356 -6.2782 -0.0675 13 6 5.8736 -7.5466 0.6084 14 7 4.7409 -7.1287 1.4475 15 6 3.9559 -7.9604 2.2004 16 1 3.1988 -7.5467 2.8501 17 6 4.1331 -9.3353 2.1287 18 7 5.1425 -9.8341 1.4470 19 14 2.9390 -10.4777 2.9996 20 1 1.8908 -10.9193 2.0448 21 1 3.6724 -11.6627 3.5125 22 1 2.3045 -9.7592 4.1339 23 6 4.5899 -5.6654 1.3441 24 8 2.2870 -1.0887 -0.0005 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3634 0.8900 0.5138 28 1 1.9612 2.1261 0.0009 29 1 4.5112 1.2704 -0.0004 30 1 3.6610 -3.3123 -0.0046 31 1 6.3143 -3.6583 -0.9083 32 1 6.3233 -3.6605 0.8717 33 1 6.7196 -6.4846 -1.0994 34 1 7.2833 -5.8829 0.4924 35 1 5.5327 -8.2509 -0.1504 36 1 6.6435 -8.0102 1.2251 37 1 5.2666 -10.7947 1.3972 38 1 5.1156 -5.1714 2.1613 39 1 3.5351 -5.3908 1.3497 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028390587.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:51 Heat of formation + Delta-G solvation = -3.503039 kcal Electronic energy + Delta-G solvation = -21054.177411 eV Core-core repulsion = 17770.981255 eV Total energy + Delta-G solvation = -3283.196156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.88744 -39.52033 -37.63752 -34.80220 -33.49564 -32.54876 -32.17404 -29.92690 -28.56371 -27.30234 -25.45376 -23.74634 -22.16801 -21.77969 -20.49076 -19.97049 -19.82469 -18.27863 -16.79449 -16.68392 -16.05513 -15.70938 -15.23451 -14.71254 -14.51091 -14.11887 -13.60746 -13.52936 -13.35732 -13.22866 -13.17999 -13.01357 -12.35283 -12.22107 -12.03848 -11.76111 -11.39909 -10.90592 -10.81265 -10.58097 -10.24418 -10.23530 -10.08043 -9.94764 -9.83590 -9.67900 -9.13381 -8.64692 -8.58046 -6.83489 -5.72978 -3.05322 0.89422 2.11628 2.42889 3.12153 3.18468 3.39585 3.44737 3.46932 4.35198 4.48967 4.69262 4.69368 5.00463 5.07794 5.08993 5.21262 5.30591 5.41945 5.43557 5.52531 5.60641 5.66825 5.74759 5.87569 6.01049 6.04229 6.15337 6.32135 6.33782 6.49791 6.52588 6.63493 6.70994 6.90008 7.45405 7.55366 7.63184 7.82270 8.04486 8.25464 9.21393 9.81938 10.48507 11.39222 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.021609 B = 0.003606 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.433599 B = 7762.899076 C = 8867.924457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 C -0.226 4.226 4 C -0.120 4.120 5 C -0.077 4.077 6 C 0.600 3.400 7 O -0.526 6.526 8 N -0.712 5.712 9 C 0.131 3.869 10 C -0.118 4.118 11 H 0.081 0.919 12 C -0.134 4.134 13 C 0.176 3.824 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.141 3.859 24 O -0.161 6.161 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.155 0.845 29 H 0.160 0.840 30 H 0.407 0.593 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.252 0.748 38 H 0.019 0.981 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 19.569 -5.210 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 C -0.245 4.245 4 C -0.141 4.141 5 C -0.129 4.129 6 C 0.386 3.614 7 O -0.405 6.405 8 N -0.362 5.362 9 C 0.008 3.992 10 C -0.138 4.138 11 H 0.099 0.901 12 C -0.173 4.173 13 C 0.052 3.948 14 N -0.333 5.333 15 C -0.359 4.359 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.567 5.567 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.218 1.218 22 H -0.206 1.206 23 C 0.015 3.985 24 O -0.057 6.057 25 H 0.104 0.896 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.173 0.827 29 H 0.177 0.823 30 H 0.242 0.758 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.037 0.963 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.767 19.298 -5.159 20.792 hybrid contribution -0.965 -0.650 0.461 1.251 sum -6.731 18.648 -4.698 20.375 Atomic orbital electron populations 1.20424 0.84560 1.04606 1.03984 1.22839 0.94337 0.84109 1.02156 1.21581 0.92367 0.99758 1.10777 1.21935 0.98596 0.92959 1.00608 1.22125 0.81897 0.94705 1.14158 1.16551 0.85958 0.81694 0.77213 1.90874 1.22042 1.76243 1.51308 1.46005 1.11460 1.05249 1.73466 1.21506 0.87190 0.88109 1.02396 1.22622 0.99261 0.91780 1.00162 0.90105 1.22852 0.96281 0.97548 1.00603 1.21154 0.89468 0.90818 0.93400 1.44490 1.34634 1.00404 1.53739 1.19061 1.11694 0.87245 1.17861 0.90464 1.24823 0.98457 0.96666 1.00404 1.69975 1.29613 1.11334 1.45789 0.86123 0.80398 0.80625 0.78790 1.21616 1.21751 1.20635 1.21593 0.97224 0.86818 0.92854 1.84024 1.16007 1.34950 1.70682 0.89561 0.89957 0.88978 0.82719 0.82262 0.75785 0.91217 0.90912 0.91916 0.92129 0.93396 0.94037 0.93744 0.96295 0.94550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.44 10.41 36.00 0.37 -0.06 16 2 C 0.02 0.17 7.31 -35.41 -0.26 -0.09 16 3 C -0.23 -2.11 10.77 -39.88 -0.43 -2.54 16 4 C -0.12 -1.39 10.62 -39.39 -0.42 -1.80 16 5 C -0.08 -1.01 7.13 -36.80 -0.26 -1.27 16 6 C 0.60 8.93 7.79 -12.86 -0.10 8.83 16 7 O -0.53 -9.20 16.87 5.19 0.09 -9.11 16 8 N -0.71 -9.88 5.44 -61.63 -0.34 -10.21 16 9 C 0.13 1.92 5.12 -4.05 -0.02 1.90 16 10 C -0.12 -1.98 3.07 -88.48 -0.27 -2.25 16 11 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 12 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 13 C 0.18 4.26 5.38 -3.06 -0.02 4.24 16 14 N -0.61 -15.49 3.40 -170.03 -0.58 -16.07 16 15 C -0.23 -6.45 10.26 -15.07 -0.15 -6.60 16 16 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 18 N -0.92 -27.08 10.36 55.49 0.57 -26.50 16 19 Si 0.91 22.09 29.56 -169.99 -5.02 17.06 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.14 2.87 6.56 -2.50 -0.02 2.85 16 24 O -0.16 -1.94 10.40 5.03 0.05 -1.89 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.41 5.17 8.19 -40.82 -0.33 4.84 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 1.12 8.03 -51.93 -0.42 0.71 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 35 H 0.05 1.28 7.30 -51.93 -0.38 0.90 16 36 H 0.04 1.11 7.61 -51.93 -0.40 0.72 16 37 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -32.83 330.05 -7.79 -40.62 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.71 Total: 0.82 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.83 Total: 0.31 kcal Atomic # 7 Polarization: -52.45 SS G_CDS: -0.34 Total: -52.78 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.14 Total: -11.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.83 -7.79 -40.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028390587.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.118 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds