Wall clock time and date at job start Tue Mar 31 2020 00:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35133 * 125.61529 * 2 1 4 4 C 1.40362 * 107.11621 * 179.78149 * 3 2 1 5 5 C 1.36544 * 106.70645 * 0.40850 * 4 3 2 6 6 C 1.46655 * 125.99151 * 179.85407 * 5 4 3 7 7 O 1.21700 * 119.99776 * 359.71309 * 6 5 4 8 8 N 1.34772 * 120.00411 * 179.71652 * 6 5 4 9 9 C 1.46500 * 120.00129 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47456 * 180.02562 * 9 8 6 11 11 H 1.09002 * 110.78021 * 303.21938 * 10 9 8 12 12 C 1.55158 * 110.72343 * 179.97438 * 10 9 8 13 13 C 1.54915 * 101.58006 * 206.13539 * 12 10 9 14 14 N 1.47418 * 104.83366 * 37.00793 * 13 12 10 15 15 C 1.36941 * 125.64598 * 156.13735 * 14 13 12 16 16 H 1.07996 * 120.00209 * 341.74567 * 15 14 13 17 17 C 1.38817 * 119.99845 * 161.74411 * 15 14 13 18 18 N 1.31614 * 120.00082 * 156.43266 * 17 15 14 19 19 Si 1.86799 * 120.00015 * 336.43087 * 17 15 14 20 20 H 1.48502 * 109.47661 * 84.69233 * 19 17 15 21 21 H 1.48497 * 109.47222 * 204.69847 * 19 17 15 22 22 H 1.48506 * 109.47141 * 324.69790 * 19 17 15 23 23 C 1.47021 * 108.70397 * 335.86906 * 14 13 12 24 24 O 1.33929 * 125.61994 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47348 * 299.98444 * 1 2 3 27 27 H 1.08997 * 109.47136 * 59.98084 * 1 2 3 28 28 H 1.08000 * 126.44252 * 0.03227 * 3 2 1 29 29 H 1.08004 * 126.64834 * 180.29981 * 4 3 2 30 30 H 0.96995 * 120.00055 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47256 * 59.99672 * 9 8 6 32 32 H 1.09005 * 109.47289 * 299.99999 * 9 8 6 33 33 H 1.08996 * 111.00500 * 324.20487 * 12 10 9 34 34 H 1.08999 * 111.00206 * 88.02559 * 12 10 9 35 35 H 1.09004 * 110.36511 * 278.16911 * 13 12 10 36 36 H 1.08995 * 110.36459 * 155.85004 * 13 12 10 37 37 H 0.97001 * 119.99803 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88118 * 120.47568 * 23 14 13 39 39 H 1.08995 * 109.88642 * 241.48507 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0051 5 6 3.5823 -0.7115 -0.0013 6 6 4.7414 -1.6101 -0.0022 7 8 5.8680 -1.1499 -0.0022 8 7 4.5590 -2.9454 -0.0031 9 6 5.7169 -3.8429 -0.0046 10 6 5.2364 -5.2954 -0.0060 11 1 4.5852 -5.4881 0.8466 12 6 6.4417 -6.2724 -0.0082 13 6 5.8247 -7.5258 -0.6778 14 7 4.9165 -6.9938 -1.7100 15 6 4.5081 -7.6607 -2.8341 16 1 5.0601 -8.5213 -3.1820 17 6 3.3844 -7.2306 -3.5265 18 7 3.2418 -7.5297 -4.8002 19 14 2.0747 -6.2274 -2.6503 20 1 2.4613 -4.7936 -2.6585 21 1 0.7745 -6.3936 -3.3483 22 1 1.9471 -6.6975 -1.2474 23 6 4.5168 -5.6312 -1.3293 24 8 2.2870 -1.0887 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5136 0.8901 27 1 -0.3633 0.5141 -0.8898 28 1 1.9612 2.1260 0.0005 29 1 4.5113 1.2704 0.0110 30 1 3.6611 -3.3122 -0.0035 31 1 6.3195 -3.6600 0.8851 32 1 6.3183 -3.6587 -0.8948 33 1 7.2644 -5.8766 -0.6035 34 1 6.7680 -6.4925 1.0082 35 1 5.2668 -8.1107 0.0535 36 1 6.6048 -8.1339 -1.1357 37 1 2.4568 -7.2288 -5.2841 38 1 4.8181 -4.9263 -2.1042 39 1 3.4369 -5.5874 -1.1882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028390588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:58 Heat of formation + Delta-G solvation = 4.561444 kcal Electronic energy + Delta-G solvation = -21533.852732 eV Core-core repulsion = 18251.006278 eV Total energy + Delta-G solvation = -3282.846454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.86351 -39.58454 -38.00138 -34.86972 -33.46892 -32.60199 -32.18615 -30.53497 -28.87040 -27.51612 -25.61264 -23.79757 -22.23017 -21.76231 -20.60316 -20.29065 -19.99496 -18.31446 -16.95097 -16.66491 -16.27863 -15.86658 -15.63809 -14.91287 -14.57873 -14.05497 -13.56568 -13.47524 -13.42553 -13.24916 -13.18889 -13.15333 -12.80227 -12.49944 -12.19901 -11.97946 -11.60145 -11.33181 -10.98612 -10.79025 -10.59477 -10.28197 -10.20798 -10.20536 -9.88791 -9.36558 -9.15951 -8.64711 -8.62371 -7.07881 -5.96631 -3.25126 0.91173 2.13825 2.45578 3.11143 3.17003 3.31367 3.42703 3.47184 4.36940 4.52563 4.68349 4.71976 4.82142 5.00107 5.04311 5.04787 5.10865 5.22410 5.33272 5.42309 5.46051 5.60199 5.63668 5.75178 5.78323 5.84952 5.99803 6.06179 6.18112 6.24978 6.28613 6.42749 6.57205 6.70397 6.71850 6.77267 7.41724 7.70189 8.02155 8.29857 8.82218 9.67652 10.16545 11.19963 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.005285 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.371985 B = 5296.708513 C = 6536.376453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.019 3.981 3 C -0.226 4.226 4 C -0.118 4.118 5 C -0.079 4.079 6 C 0.602 3.398 7 O -0.524 6.524 8 N -0.715 5.715 9 C 0.131 3.869 10 C -0.117 4.117 11 H 0.081 0.919 12 C -0.121 4.121 13 C 0.132 3.868 14 N -0.610 5.610 15 C -0.243 4.243 16 H 0.094 0.906 17 C 0.021 3.979 18 N -0.906 5.906 19 Si 0.886 3.114 20 H -0.286 1.286 21 H -0.304 1.304 22 H -0.280 1.280 23 C 0.124 3.876 24 O -0.161 6.161 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.156 0.844 29 H 0.160 0.840 30 H 0.407 0.593 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.653 15.001 13.161 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.138 4.138 5 C -0.131 4.131 6 C 0.388 3.612 7 O -0.403 6.403 8 N -0.365 5.365 9 C 0.008 3.992 10 C -0.137 4.137 11 H 0.100 0.900 12 C -0.160 4.160 13 C 0.007 3.993 14 N -0.337 5.337 15 C -0.370 4.370 16 H 0.111 0.889 17 C -0.177 4.177 18 N -0.550 5.550 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.232 1.232 22 H -0.207 1.207 23 C -0.001 4.001 24 O -0.057 6.057 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.174 0.826 29 H 0.178 0.822 30 H 0.241 0.759 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.038 14.919 12.917 19.838 hybrid contribution -1.374 0.567 0.350 1.527 sum -3.412 15.485 13.267 20.675 Atomic orbital electron populations 1.20438 0.84568 1.04700 1.03970 1.22855 0.94366 0.84093 1.02023 1.21559 0.92328 0.99772 1.10826 1.21925 0.98603 0.92844 1.00467 1.22094 0.81903 0.94730 1.14384 1.16526 0.86031 0.81565 0.77045 1.90869 1.21986 1.76205 1.51243 1.45985 1.11355 1.05426 1.73744 1.21512 0.87347 0.87554 1.02760 1.22469 0.98791 0.92989 0.99406 0.90032 1.22734 0.96540 0.96178 1.00504 1.21626 0.93030 0.93908 0.90776 1.44790 1.54982 1.10610 1.23300 1.18678 1.07772 1.12439 0.98133 0.88887 1.24961 0.98099 0.98989 0.95668 1.69855 1.29318 1.49090 1.06710 0.86906 0.82139 0.79886 0.79281 1.21329 1.23212 1.20709 1.21706 0.96278 0.88691 0.93415 1.84041 1.16048 1.35032 1.70606 0.90081 0.89172 0.89093 0.82643 0.82198 0.75857 0.90861 0.90510 0.90801 0.91138 0.95734 0.93086 0.92716 0.94000 0.95963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.41 36.01 0.37 -0.17 16 2 C 0.02 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.23 -2.33 10.77 -39.89 -0.43 -2.76 16 4 C -0.12 -1.47 10.62 -39.39 -0.42 -1.88 16 5 C -0.08 -1.14 7.13 -36.80 -0.26 -1.41 16 6 C 0.60 9.61 7.79 -12.87 -0.10 9.51 16 7 O -0.52 -9.48 16.87 5.19 0.09 -9.40 16 8 N -0.72 -10.85 5.40 -61.63 -0.33 -11.18 16 9 C 0.13 1.94 4.99 -4.05 -0.02 1.92 16 10 C -0.12 -1.88 3.02 -88.79 -0.27 -2.15 16 11 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 12 C -0.12 -1.83 6.53 -24.58 -0.16 -1.99 16 13 C 0.13 2.54 7.23 -2.53 -0.02 2.52 16 14 N -0.61 -14.79 3.21 -170.07 -0.55 -15.34 16 15 C -0.24 -6.97 10.57 -15.06 -0.16 -7.13 16 16 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 17 C 0.02 0.63 5.44 -17.43 -0.09 0.54 16 18 N -0.91 -28.22 13.97 55.49 0.78 -27.44 16 19 Si 0.89 22.84 24.39 -169.99 -4.15 18.69 16 20 H -0.29 -7.11 6.84 56.52 0.39 -6.73 16 21 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 22 H -0.28 -7.07 6.87 56.52 0.39 -6.68 16 23 C 0.12 2.67 4.45 -3.06 -0.01 2.66 16 24 O -0.16 -2.21 10.40 5.01 0.05 -2.16 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 29 H 0.16 1.79 8.06 -52.48 -0.42 1.36 16 30 H 0.41 5.95 8.08 -40.82 -0.33 5.62 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.23 8.06 -51.93 -0.42 0.81 16 33 H 0.07 1.10 8.05 -51.93 -0.42 0.68 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.77 8.31 -40.82 -0.34 7.44 16 38 H 0.04 0.97 7.76 -51.93 -0.40 0.57 16 39 H 0.02 0.52 3.49 -51.93 -0.18 0.34 16 LS Contribution 324.37 15.07 4.89 4.89 Total: -1.00 -34.17 324.37 -6.61 -40.78 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.56 Total: 1.54 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.83 Total: -0.39 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.10 Total: -53.96 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.14 Total: -11.55 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.15 Total: 18.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.17 -6.61 -40.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028390588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.344 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds