Wall clock time and date at job start Tue Mar 31 2020 00:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35133 * 125.61529 * 2 1 4 4 C 1.40362 * 107.11621 * 179.78149 * 3 2 1 5 5 C 1.36544 * 106.70645 * 0.40850 * 4 3 2 6 6 C 1.46655 * 125.99151 * 179.85407 * 5 4 3 7 7 O 1.21700 * 119.99776 * 359.71309 * 6 5 4 8 8 N 1.34772 * 120.00411 * 179.71652 * 6 5 4 9 9 C 1.46500 * 120.00129 * 179.97438 * 8 6 5 10 10 C 1.52992 * 109.47456 * 180.02562 * 9 8 6 11 11 H 1.09002 * 110.78021 * 303.21938 * 10 9 8 12 12 C 1.55158 * 110.72343 * 179.97438 * 10 9 8 13 13 C 1.54915 * 101.58006 * 206.13539 * 12 10 9 14 14 N 1.47418 * 104.83366 * 37.00793 * 13 12 10 15 15 C 1.36941 * 125.64598 * 156.13735 * 14 13 12 16 16 H 1.07996 * 120.00209 * 341.74567 * 15 14 13 17 17 C 1.38817 * 119.99845 * 161.74411 * 15 14 13 18 18 N 1.31614 * 120.00082 * 156.43266 * 17 15 14 19 19 Si 1.86799 * 120.00015 * 336.43087 * 17 15 14 20 20 H 1.48502 * 109.47661 * 84.69233 * 19 17 15 21 21 H 1.48497 * 109.47222 * 204.69847 * 19 17 15 22 22 H 1.48506 * 109.47141 * 324.69790 * 19 17 15 23 23 C 1.47021 * 108.70397 * 335.86906 * 14 13 12 24 24 O 1.33929 * 125.61994 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.46898 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47348 * 299.98444 * 1 2 3 27 27 H 1.08997 * 109.47136 * 59.98084 * 1 2 3 28 28 H 1.08000 * 126.44252 * 0.03227 * 3 2 1 29 29 H 1.08004 * 126.64834 * 180.29981 * 4 3 2 30 30 H 0.96995 * 120.00055 * 0.02562 * 8 6 5 31 31 H 1.09002 * 109.47256 * 59.99672 * 9 8 6 32 32 H 1.09005 * 109.47289 * 299.99999 * 9 8 6 33 33 H 1.08996 * 111.00500 * 324.20487 * 12 10 9 34 34 H 1.08999 * 111.00206 * 88.02559 * 12 10 9 35 35 H 1.09004 * 110.36511 * 278.16911 * 13 12 10 36 36 H 1.08995 * 110.36459 * 155.85004 * 13 12 10 37 37 H 0.97001 * 119.99803 * 180.02562 * 18 17 15 38 38 H 1.09002 * 109.88118 * 120.47568 * 23 14 13 39 39 H 1.08995 * 109.88642 * 241.48507 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 0.0051 5 6 3.5823 -0.7115 -0.0013 6 6 4.7414 -1.6101 -0.0022 7 8 5.8680 -1.1499 -0.0022 8 7 4.5590 -2.9454 -0.0031 9 6 5.7169 -3.8429 -0.0046 10 6 5.2364 -5.2954 -0.0060 11 1 4.5852 -5.4881 0.8466 12 6 6.4417 -6.2724 -0.0082 13 6 5.8247 -7.5258 -0.6778 14 7 4.9165 -6.9938 -1.7100 15 6 4.5081 -7.6607 -2.8341 16 1 5.0601 -8.5213 -3.1820 17 6 3.3844 -7.2306 -3.5265 18 7 3.2418 -7.5297 -4.8002 19 14 2.0747 -6.2274 -2.6503 20 1 2.4613 -4.7936 -2.6585 21 1 0.7745 -6.3936 -3.3483 22 1 1.9471 -6.6975 -1.2474 23 6 4.5168 -5.6312 -1.3293 24 8 2.2870 -1.0887 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5136 0.8901 27 1 -0.3633 0.5141 -0.8898 28 1 1.9612 2.1260 0.0005 29 1 4.5113 1.2704 0.0110 30 1 3.6611 -3.3122 -0.0035 31 1 6.3195 -3.6600 0.8851 32 1 6.3183 -3.6587 -0.8948 33 1 7.2644 -5.8766 -0.6035 34 1 6.7680 -6.4925 1.0082 35 1 5.2668 -8.1107 0.0535 36 1 6.6048 -8.1339 -1.1357 37 1 2.4568 -7.2288 -5.2841 38 1 4.8181 -4.9263 -2.1042 39 1 3.4369 -5.5874 -1.1882 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028390588.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:56 Heat of formation + Delta-G solvation = -20.052890 kcal Electronic energy + Delta-G solvation = -21534.920090 eV Core-core repulsion = 18251.006278 eV Total energy + Delta-G solvation = -3283.913811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.76904 -40.81623 -39.51087 -36.24012 -34.62285 -34.24397 -33.05939 -32.21194 -30.33864 -28.56193 -27.15038 -25.39381 -23.33550 -22.68707 -22.04221 -21.74249 -21.11866 -19.44108 -18.97470 -17.89656 -17.57227 -17.20050 -16.69217 -16.27658 -15.91007 -15.51872 -15.20376 -15.03411 -14.38453 -14.25866 -14.18037 -14.09552 -14.00075 -13.77149 -13.49523 -13.27781 -13.05328 -12.85652 -12.68821 -12.45195 -12.19513 -11.88133 -11.63196 -11.48472 -11.24998 -11.09707 -10.79811 -10.35866 -9.51802 -9.10408 -8.22946 -5.47326 -0.07622 1.23832 1.29121 1.31329 1.42206 1.53655 2.00689 2.09291 2.36667 2.97521 3.27200 3.51389 3.65780 3.76846 3.81285 3.87322 3.91234 4.31908 4.43447 4.45390 4.50546 4.55498 4.60369 4.68277 4.69766 4.72138 4.82499 4.89634 5.00027 5.07706 5.08886 5.11518 5.21651 5.41634 5.42255 5.65818 5.79399 6.06271 6.27952 6.73099 6.85641 7.50725 8.07389 8.97433 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.016679 B = 0.005285 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.371985 B = 5296.708513 C = 6536.376453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.020 3.980 3 C -0.227 4.227 4 C -0.114 4.114 5 C -0.118 4.118 6 C 0.601 3.399 7 O -0.556 6.556 8 N -0.715 5.715 9 C 0.137 3.863 10 C -0.101 4.101 11 H 0.105 0.895 12 C -0.105 4.105 13 C 0.122 3.878 14 N -0.631 5.631 15 C -0.238 4.238 16 H 0.062 0.938 17 C -0.040 4.040 18 N -0.954 5.954 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.308 1.308 22 H -0.268 1.268 23 C 0.119 3.881 24 O -0.179 6.179 25 H 0.078 0.922 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.188 0.812 29 H 0.167 0.833 30 H 0.409 0.591 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.262 0.738 38 H 0.018 0.982 39 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.535 16.924 15.860 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.032 4.032 3 C -0.246 4.246 4 C -0.134 4.134 5 C -0.169 4.169 6 C 0.389 3.611 7 O -0.437 6.437 8 N -0.365 5.365 9 C 0.014 3.986 10 C -0.120 4.120 11 H 0.123 0.877 12 C -0.144 4.144 13 C -0.003 4.003 14 N -0.358 5.358 15 C -0.367 4.367 16 H 0.080 0.920 17 C -0.234 4.234 18 N -0.601 5.601 19 Si 0.782 3.218 20 H -0.203 1.203 21 H -0.237 1.237 22 H -0.194 1.194 23 C -0.006 4.006 24 O -0.076 6.076 25 H 0.097 0.903 26 H 0.134 0.866 27 H 0.127 0.873 28 H 0.206 0.794 29 H 0.185 0.815 30 H 0.244 0.756 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -2.905 16.837 15.666 23.181 hybrid contribution -1.078 -0.041 -0.512 1.194 sum -3.983 16.796 15.155 22.970 Atomic orbital electron populations 1.20688 0.81675 1.05257 1.06065 1.23769 0.95971 0.83574 0.99912 1.21940 0.91078 1.01274 1.10289 1.22246 1.00065 0.92338 0.98777 1.21906 0.82060 0.95129 1.17842 1.16721 0.86250 0.81788 0.76342 1.90835 1.23214 1.76706 1.52912 1.45997 1.11536 1.05412 1.73517 1.21465 0.87301 0.86668 1.03179 1.22401 0.98936 0.93834 0.96813 0.87681 1.22715 0.95767 0.93325 1.02575 1.21906 0.92288 0.96076 0.89983 1.44953 1.55518 1.11902 1.23393 1.18668 1.07132 1.11406 0.99462 0.92043 1.25627 1.00276 1.01376 0.96141 1.69984 1.30021 1.51860 1.08256 0.85844 0.78774 0.78838 0.78327 1.20326 1.23714 1.19396 1.21789 0.96273 0.86771 0.95759 1.84021 1.15933 1.36406 1.71203 0.90317 0.86579 0.87256 0.79431 0.81519 0.75589 0.88425 0.92092 0.90595 0.86656 0.94504 0.93432 0.92897 0.96382 0.96933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.41 71.24 0.74 -0.09 16 2 C 0.02 0.38 7.31 24.97 0.18 0.57 16 3 C -0.23 -4.07 10.77 22.07 0.24 -3.84 16 4 C -0.11 -2.67 10.62 22.39 0.24 -2.43 16 5 C -0.12 -3.32 7.13 24.07 0.17 -3.15 16 6 C 0.60 18.89 7.79 86.44 0.67 19.56 16 7 O -0.56 -19.96 16.87 -4.35 -0.07 -20.03 16 8 N -0.72 -20.82 5.40 -467.11 -2.52 -23.34 16 9 C 0.14 3.77 4.99 86.38 0.43 4.20 16 10 C -0.10 -2.94 3.02 -9.61 -0.03 -2.97 16 11 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 12 C -0.11 -2.82 6.53 31.99 0.21 -2.61 16 13 C 0.12 4.45 7.23 86.86 0.63 5.08 16 14 N -0.63 -30.41 3.21 -691.99 -2.22 -32.63 16 15 C -0.24 -13.99 10.57 84.03 0.89 -13.11 16 16 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 17 C -0.04 -2.39 5.44 84.86 0.46 -1.93 16 18 N -0.95 -61.54 13.97 21.65 0.30 -61.23 16 19 Si 0.95 48.03 24.39 68.60 1.67 49.70 16 20 H -0.28 -13.34 6.84 99.48 0.68 -12.66 16 21 H -0.31 -15.63 7.11 99.48 0.71 -14.92 16 22 H -0.27 -12.82 6.87 99.48 0.68 -12.14 16 23 C 0.12 4.99 4.45 86.73 0.39 5.37 16 24 O -0.18 -4.67 10.40 -5.00 -0.05 -4.72 16 25 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 26 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.19 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.17 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.41 11.43 8.08 -92.71 -0.75 10.68 16 31 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.06 1.89 8.06 -2.38 -0.02 1.87 16 33 H 0.08 2.03 8.05 -2.39 -0.02 2.01 16 34 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.02 0.84 7.76 -2.39 -0.02 0.82 16 39 H 0.01 0.58 3.49 -2.39 -0.01 0.57 16 Total: -1.00 -77.09 324.37 2.59 -74.50 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: 0.26 Total: 13.10 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.22 Total: 4.66 kcal Atomic # 7 Polarization: -112.77 SS G_CDS: -4.44 Total: -117.21 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.13 Total: -24.75 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 1.67 Total: 49.70 kcal Total: -77.09 2.59 -74.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028390588.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.449 kcal (2) G-P(sol) polarization free energy of solvation -77.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds