Wall clock time and date at job start Tue Mar 31 2020 01:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40365 * 126.64423 * 2 1 4 4 C 1.35133 * 107.11126 * 180.29914 * 3 2 1 5 5 O 1.33932 * 108.76744 * 359.74964 * 4 3 2 6 6 C 1.34909 * 109.38287 * 359.97438 * 5 4 3 7 7 C 1.46668 * 125.98453 * 179.97438 * 6 5 4 8 8 O 1.21692 * 119.99863 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99976 * 0.02921 * 7 6 5 10 10 C 1.46497 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47114 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.92180 * 57.44684 * 11 10 9 13 13 C 1.55155 * 111.00532 * 181.35298 * 11 10 9 14 14 C 1.54327 * 102.94571 * 153.57522 * 13 11 10 15 15 N 1.47024 * 107.26774 * 337.80617 * 14 13 11 16 16 C 1.36941 * 125.64618 * 179.20447 * 15 14 13 17 17 H 1.08005 * 119.99780 * 179.68989 * 16 15 14 18 18 C 1.38813 * 119.99913 * 359.69358 * 16 15 14 19 19 N 1.31616 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47311 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47271 * 120.00121 * 20 18 16 23 23 H 1.48501 * 109.46665 * 239.99715 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 15 14 13 25 25 H 1.09000 * 109.47064 * 270.12602 * 1 2 3 26 26 H 1.09001 * 109.47490 * 30.12662 * 1 2 3 27 27 H 1.09003 * 109.47319 * 150.12934 * 1 2 3 28 28 H 1.07996 * 126.44250 * 0.05552 * 3 2 1 29 29 H 1.07998 * 125.61587 * 179.71319 * 4 3 2 30 30 H 0.97000 * 120.00160 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.46937 * 60.00106 * 10 9 7 32 32 H 1.09002 * 109.47231 * 300.00009 * 10 9 7 33 33 H 1.08999 * 110.71965 * 271.93488 * 13 11 10 34 34 H 1.09000 * 110.72417 * 35.03508 * 13 11 10 35 35 H 1.08995 * 109.88184 * 218.39040 * 14 13 11 36 36 H 1.09002 * 109.88385 * 97.22047 * 14 13 11 37 37 H 0.97001 * 119.99407 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.36518 * 142.96440 * 24 15 14 39 39 H 1.08995 * 110.36673 * 265.17549 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0067 5 8 3.6004 -0.6648 -0.0053 6 6 2.3220 -1.0955 0.0029 7 6 1.8842 -2.4953 0.0065 8 8 0.6968 -2.7614 0.0135 9 7 2.7970 -3.4868 0.0019 10 6 2.3598 -4.8850 0.0060 11 6 3.5842 -5.8023 0.0002 12 1 4.2290 -5.5962 0.8544 13 6 3.1610 -7.2947 -0.0299 14 6 4.3681 -7.9830 -0.7013 15 7 5.0841 -6.9550 -1.4710 16 6 6.2244 -7.1554 -2.2022 17 1 6.6732 -6.3326 -2.7390 18 6 6.8034 -8.4159 -2.2537 19 7 6.2567 -9.4184 -1.5992 20 14 8.3594 -8.6889 -3.2507 21 1 8.7703 -7.4115 -3.8869 22 1 9.4432 -9.1678 -2.3556 23 1 8.1012 -9.7048 -4.3027 24 6 4.3675 -5.6744 -1.3302 25 1 -0.3633 0.0023 1.0277 26 1 -0.3634 0.8888 -0.5158 27 1 -0.3634 -0.8912 -0.5118 28 1 2.0306 2.1595 0.0008 29 1 4.5046 1.2916 -0.0129 30 1 3.7435 -3.2747 -0.0033 31 1 1.7555 -5.0793 -0.8801 32 1 1.7663 -5.0775 0.8998 33 1 3.0140 -7.6743 0.9812 34 1 2.2577 -7.4276 -0.6253 35 1 4.0211 -8.7714 -1.3691 36 1 5.0265 -8.4019 0.0597 37 1 6.6616 -10.2992 -1.6349 38 1 5.0756 -4.8475 -1.2755 39 1 3.6808 -5.5302 -2.1643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028396489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:42 Heat of formation + Delta-G solvation = -3.235402 kcal Electronic energy + Delta-G solvation = -21208.589423 eV Core-core repulsion = 17925.404872 eV Total energy + Delta-G solvation = -3283.184550 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.87536 -39.51039 -37.64968 -34.97499 -34.07485 -32.53074 -30.78839 -29.77493 -28.50788 -27.52107 -25.54585 -23.89127 -22.60788 -21.35061 -20.39625 -19.94605 -19.57722 -18.17581 -16.81431 -16.57813 -16.15996 -16.00263 -15.23382 -14.71892 -14.48502 -14.18704 -13.64729 -13.48950 -13.28039 -13.18323 -13.02013 -12.71875 -12.34936 -12.01188 -11.97079 -11.74793 -11.40634 -10.90158 -10.81570 -10.49962 -10.19612 -10.04750 -9.92615 -9.90402 -9.83471 -9.66303 -9.15122 -8.70764 -8.60661 -6.83467 -5.71656 -3.05154 0.91600 2.13678 2.55984 3.11049 3.22911 3.39451 3.44876 3.47433 4.48282 4.50216 4.57088 4.75486 5.08243 5.22597 5.25835 5.32328 5.40929 5.53287 5.55329 5.55617 5.67618 5.83177 5.87727 5.93801 6.02937 6.04180 6.20091 6.33510 6.38013 6.49746 6.52652 6.63807 6.70617 6.90396 7.47453 7.56137 7.63058 7.82631 8.06754 8.25755 9.21952 9.82257 10.48247 11.40188 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.003502 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.849484 B = 7994.247702 C = 8819.056765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.091 4.091 3 C -0.227 4.227 4 C -0.005 4.005 5 O -0.162 6.162 6 C -0.082 4.082 7 C 0.600 3.400 8 O -0.524 6.524 9 N -0.712 5.712 10 C 0.132 3.868 11 C -0.119 4.119 12 H 0.081 0.919 13 C -0.134 4.134 14 C 0.177 3.823 15 N -0.607 5.607 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.142 3.858 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.210 0.790 30 H 0.407 0.593 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.251 0.749 38 H 0.035 0.965 39 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.184 18.723 5.392 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.246 4.246 4 C -0.075 4.075 5 O -0.057 6.057 6 C -0.134 4.134 7 C 0.386 3.614 8 O -0.403 6.403 9 N -0.362 5.362 10 C 0.009 3.991 11 C -0.138 4.138 12 H 0.099 0.901 13 C -0.173 4.173 14 C 0.052 3.948 15 N -0.333 5.333 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.569 5.569 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.015 3.985 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.172 0.828 29 H 0.226 0.774 30 H 0.242 0.758 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.054 0.946 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -8.629 18.091 5.335 20.741 hybrid contribution 1.380 0.183 -0.526 1.488 sum -7.249 18.273 4.809 20.238 Atomic orbital electron populations 1.20418 0.88245 1.03583 1.02820 1.20640 0.97678 0.91001 1.00105 1.21738 0.92477 1.00111 1.10317 1.24368 0.99958 0.80675 1.02459 1.84087 1.28361 1.22673 1.70551 1.21967 0.81475 0.94979 1.14986 1.16529 0.85818 0.81814 0.77226 1.90835 1.15723 1.82396 1.51305 1.46003 1.10077 1.06608 1.73561 1.21487 0.97085 0.78210 1.02328 1.22623 0.95523 0.95499 1.00190 0.90111 1.22861 1.00273 0.93570 1.00606 1.21152 0.89079 0.90346 0.94182 1.44495 1.27637 1.03761 1.57402 1.19109 0.99478 0.94846 1.22238 0.90427 1.24809 0.99391 0.95810 1.00512 1.69977 1.40614 1.00531 1.45800 0.86042 0.82714 0.77688 0.79308 1.20520 1.21754 1.21751 1.21569 0.93711 0.90217 0.92990 0.90885 0.91587 0.89418 0.82754 0.77377 0.75795 0.90958 0.91268 0.91923 0.92140 0.93880 0.93500 0.93809 0.94637 0.96279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 9.81 36.01 0.35 -0.61 16 2 C -0.09 -1.06 6.20 -104.44 -0.65 -1.70 16 3 C -0.23 -2.04 10.83 -39.89 -0.43 -2.47 16 4 C 0.00 -0.04 12.08 29.63 0.36 0.32 16 5 O -0.16 -1.86 10.40 5.01 0.05 -1.81 16 6 C -0.08 -1.07 7.13 -36.79 -0.26 -1.33 16 7 C 0.60 8.76 7.79 -12.86 -0.10 8.66 16 8 O -0.52 -8.74 14.74 5.20 0.08 -8.66 16 9 N -0.71 -9.78 5.40 -61.63 -0.33 -10.11 16 10 C 0.13 1.91 5.12 -4.05 -0.02 1.89 16 11 C -0.12 -1.97 3.10 -88.47 -0.27 -2.25 16 12 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 13 C -0.13 -2.43 6.42 -24.90 -0.16 -2.59 16 14 C 0.18 4.28 5.37 -3.06 -0.02 4.26 16 15 N -0.61 -15.48 3.39 -170.07 -0.58 -16.06 16 16 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 17 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.92 -27.14 10.31 55.49 0.57 -26.56 16 20 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.14 2.86 6.41 -2.53 -0.02 2.84 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.06 6.45 -51.93 -0.34 0.72 16 28 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 29 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 30 H 0.41 5.16 8.09 -40.82 -0.33 4.83 16 31 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 35 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 36 H 0.05 1.25 7.38 -51.93 -0.38 0.86 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.02 0.40 8.01 -51.93 -0.42 -0.02 16 LS Contribution 325.83 15.07 4.91 4.91 Total: -1.00 -32.57 325.83 -7.41 -39.98 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -5.62 Total: 1.09 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.47 Total: 0.12 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.34 Total: -52.74 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.13 Total: -10.48 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.57 -7.41 -39.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028396489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.745 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds