Wall clock time and date at job start Tue Mar 31 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40365 * 126.64423 * 2 1 4 4 C 1.35133 * 107.11126 * 180.29914 * 3 2 1 5 5 O 1.33932 * 108.76744 * 359.74964 * 4 3 2 6 6 C 1.34909 * 109.38287 * 359.97438 * 5 4 3 7 7 C 1.46668 * 125.98453 * 179.97438 * 6 5 4 8 8 O 1.21692 * 119.99863 * 180.02562 * 7 6 5 9 9 N 1.34775 * 119.99976 * 0.02921 * 7 6 5 10 10 C 1.46497 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47114 * 180.02562 * 10 9 7 12 12 H 1.08997 * 110.92180 * 57.44684 * 11 10 9 13 13 C 1.55155 * 111.00532 * 181.35298 * 11 10 9 14 14 C 1.54327 * 102.94571 * 153.57522 * 13 11 10 15 15 N 1.47024 * 107.26774 * 337.80617 * 14 13 11 16 16 C 1.36941 * 125.64618 * 179.20447 * 15 14 13 17 17 H 1.08005 * 119.99780 * 179.68989 * 16 15 14 18 18 C 1.38813 * 119.99913 * 359.69358 * 16 15 14 19 19 N 1.31616 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99719 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47311 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47271 * 120.00121 * 20 18 16 23 23 H 1.48501 * 109.46665 * 239.99715 * 20 18 16 24 24 C 1.47426 * 108.70449 * 358.94057 * 15 14 13 25 25 H 1.09000 * 109.47064 * 270.12602 * 1 2 3 26 26 H 1.09001 * 109.47490 * 30.12662 * 1 2 3 27 27 H 1.09003 * 109.47319 * 150.12934 * 1 2 3 28 28 H 1.07996 * 126.44250 * 0.05552 * 3 2 1 29 29 H 1.07998 * 125.61587 * 179.71319 * 4 3 2 30 30 H 0.97000 * 120.00160 * 0.02562 * 9 7 6 31 31 H 1.09002 * 109.46937 * 60.00106 * 10 9 7 32 32 H 1.09002 * 109.47231 * 300.00009 * 10 9 7 33 33 H 1.08999 * 110.71965 * 271.93488 * 13 11 10 34 34 H 1.09000 * 110.72417 * 35.03508 * 13 11 10 35 35 H 1.08995 * 109.88184 * 218.39040 * 14 13 11 36 36 H 1.09002 * 109.88385 * 97.22047 * 14 13 11 37 37 H 0.97001 * 119.99407 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.36518 * 142.96440 * 24 15 14 39 39 H 1.08995 * 110.36673 * 265.17549 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0067 5 8 3.6004 -0.6648 -0.0053 6 6 2.3220 -1.0955 0.0029 7 6 1.8842 -2.4953 0.0065 8 8 0.6968 -2.7614 0.0135 9 7 2.7970 -3.4868 0.0019 10 6 2.3598 -4.8850 0.0060 11 6 3.5842 -5.8023 0.0002 12 1 4.2290 -5.5962 0.8544 13 6 3.1610 -7.2947 -0.0299 14 6 4.3681 -7.9830 -0.7013 15 7 5.0841 -6.9550 -1.4710 16 6 6.2244 -7.1554 -2.2022 17 1 6.6732 -6.3326 -2.7390 18 6 6.8034 -8.4159 -2.2537 19 7 6.2567 -9.4184 -1.5992 20 14 8.3594 -8.6889 -3.2507 21 1 8.7703 -7.4115 -3.8869 22 1 9.4432 -9.1678 -2.3556 23 1 8.1012 -9.7048 -4.3027 24 6 4.3675 -5.6744 -1.3302 25 1 -0.3633 0.0023 1.0277 26 1 -0.3634 0.8888 -0.5158 27 1 -0.3634 -0.8912 -0.5118 28 1 2.0306 2.1595 0.0008 29 1 4.5046 1.2916 -0.0129 30 1 3.7435 -3.2747 -0.0033 31 1 1.7555 -5.0793 -0.8801 32 1 1.7663 -5.0775 0.8998 33 1 3.0140 -7.6743 0.9812 34 1 2.2577 -7.4276 -0.6253 35 1 4.0211 -8.7714 -1.3691 36 1 5.0265 -8.4019 0.0597 37 1 6.6616 -10.2992 -1.6349 38 1 5.0756 -4.8475 -1.2755 39 1 3.6808 -5.5302 -2.1643 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028396489.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:41 Heat of formation + Delta-G solvation = -24.976072 kcal Electronic energy + Delta-G solvation = -21209.532169 eV Core-core repulsion = 17925.404872 eV Total energy + Delta-G solvation = -3284.127296 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.65686 -40.65998 -39.24376 -36.24974 -35.02940 -34.29910 -31.95594 -31.22733 -29.97620 -28.57721 -27.23830 -25.43715 -23.61367 -22.29604 -21.85577 -21.47696 -20.73428 -19.22677 -18.70404 -17.48453 -17.26265 -17.00324 -16.67923 -16.42457 -15.77470 -15.63284 -15.06964 -14.61542 -14.42713 -14.05092 -13.95603 -13.86900 -13.83452 -13.51017 -13.41374 -13.05467 -12.77792 -12.75928 -12.66703 -11.98739 -11.94769 -11.86657 -11.56182 -11.47497 -11.18568 -10.71986 -10.65631 -10.25957 -9.54855 -8.90554 -7.85687 -5.21389 0.04280 1.42777 1.45669 1.46731 1.57093 1.72352 2.09126 2.24441 2.49032 3.32587 3.57830 3.70721 3.81520 3.86410 3.96831 4.00819 4.02987 4.42367 4.55217 4.61509 4.64542 4.67622 4.76025 4.78294 4.81307 4.89670 5.03192 5.07548 5.12829 5.19849 5.28582 5.40664 5.45123 5.49866 5.67766 5.77618 5.88753 6.19731 6.43209 6.99988 7.10078 7.77345 8.41684 9.24970 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027208 B = 0.003502 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.849484 B = 7994.247702 C = 8819.056765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.095 4.095 3 C -0.235 4.235 4 C 0.011 3.989 5 O -0.174 6.174 6 C -0.121 4.121 7 C 0.599 3.401 8 O -0.554 6.554 9 N -0.710 5.710 10 C 0.144 3.856 11 C -0.096 4.096 12 H 0.089 0.911 13 C -0.121 4.121 14 C 0.182 3.818 15 N -0.630 5.630 16 C -0.243 4.243 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.979 3.021 21 H -0.265 1.265 22 H -0.291 1.291 23 H -0.293 1.293 24 C 0.138 3.862 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.184 0.816 29 H 0.253 0.747 30 H 0.412 0.588 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.005 0.995 36 H 0.013 0.987 37 H 0.246 0.754 38 H 0.045 0.955 39 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.918 21.487 5.704 23.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.254 4.254 4 C -0.058 4.058 5 O -0.070 6.070 6 C -0.172 4.172 7 C 0.387 3.613 8 O -0.435 6.435 9 N -0.360 5.360 10 C 0.021 3.979 11 C -0.116 4.116 12 H 0.107 0.893 13 C -0.160 4.160 14 C 0.057 3.943 15 N -0.356 5.356 16 C -0.372 4.372 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.600 5.600 20 Si 0.807 3.193 21 H -0.189 1.189 22 H -0.218 1.218 23 H -0.220 1.220 24 C 0.013 3.987 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.083 0.917 28 H 0.201 0.799 29 H 0.269 0.731 30 H 0.248 0.752 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.023 0.977 36 H 0.032 0.968 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -8.366 20.892 5.648 23.203 hybrid contribution 1.305 -0.552 -0.640 1.554 sum -7.062 20.340 5.008 22.106 Atomic orbital electron populations 1.20430 0.87853 1.03595 1.03143 1.21039 0.98341 0.91699 0.98703 1.22103 0.92183 1.00768 1.10325 1.25341 1.01524 0.79648 0.99280 1.84073 1.27646 1.24329 1.70962 1.21702 0.82532 0.94443 1.18524 1.16740 0.85447 0.82644 0.76508 1.90810 1.16768 1.83106 1.52784 1.45912 1.10347 1.06174 1.73540 1.21277 0.95712 0.78266 1.02691 1.22422 0.95937 0.94937 0.98316 0.89295 1.22722 0.97863 0.93895 1.01506 1.20931 0.90513 0.90111 0.92701 1.44829 1.27571 1.06002 1.57204 1.19514 1.00353 0.95096 1.22247 0.89964 1.25675 1.02672 0.95707 1.02015 1.70200 1.41967 1.00613 1.47266 0.84997 0.78829 0.77828 0.77600 1.18913 1.21776 1.22041 1.21737 0.93840 0.88320 0.94851 0.90369 0.89232 0.91673 0.79884 0.73085 0.75175 0.91624 0.89956 0.89404 0.90835 0.97719 0.96827 0.94426 0.93701 0.96401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.82 9.81 71.24 0.70 -1.12 16 2 C -0.09 -2.04 6.20 -19.74 -0.12 -2.16 16 3 C -0.24 -3.47 10.83 22.07 0.24 -3.23 16 4 C 0.01 0.15 12.08 67.10 0.81 0.96 16 5 O -0.17 -3.68 10.40 -5.00 -0.05 -3.73 16 6 C -0.12 -3.02 7.13 24.08 0.17 -2.85 16 7 C 0.60 17.20 7.79 86.44 0.67 17.87 16 8 O -0.55 -18.48 14.74 -4.32 -0.06 -18.55 16 9 N -0.71 -18.73 5.40 -467.10 -2.52 -21.25 16 10 C 0.14 3.95 5.12 86.38 0.44 4.39 16 11 C -0.10 -3.07 3.10 -9.40 -0.03 -3.10 16 12 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 13 C -0.12 -4.28 6.42 31.78 0.20 -4.07 16 14 C 0.18 9.05 5.37 86.73 0.47 9.52 16 15 N -0.63 -32.57 3.39 -691.97 -2.35 -34.92 16 16 C -0.24 -13.76 10.28 84.03 0.86 -12.90 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 19 N -0.95 -57.85 10.31 21.65 0.22 -57.63 16 20 Si 0.98 46.06 29.55 68.60 2.03 48.09 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 C 0.14 5.48 6.41 86.86 0.56 6.04 16 25 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.06 1.57 6.45 -2.39 -0.02 1.56 16 28 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 29 H 0.25 0.83 8.06 -2.91 -0.02 0.81 16 30 H 0.41 9.94 8.09 -92.71 -0.75 9.19 16 31 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 35 H 0.00 0.26 7.51 -2.39 -0.02 0.24 16 36 H 0.01 0.75 7.38 -2.39 -0.02 0.73 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.02 0.74 8.01 -2.39 -0.02 0.72 16 Total: -1.00 -73.04 325.83 3.01 -70.03 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.30 Total: 12.05 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 5.44 Total: 5.92 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -4.65 Total: -113.81 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.12 Total: -22.28 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.04 3.01 -70.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028396489.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.053 kcal (2) G-P(sol) polarization free energy of solvation -73.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds