Wall clock time and date at job start Tue Mar 31 2020 01:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40366 * 126.64541 * 2 1 4 4 C 1.35131 * 107.11094 * 180.02562 * 3 2 1 5 5 O 1.33924 * 108.77148 * 359.77128 * 4 3 2 6 6 C 1.34919 * 109.38419 * 0.38018 * 5 4 3 7 7 C 1.46653 * 125.98697 * 179.88629 * 6 5 4 8 8 O 1.21696 * 119.99989 * 179.69088 * 7 6 5 9 9 N 1.34774 * 120.00233 * 359.68995 * 7 6 5 10 10 C 1.46500 * 119.99832 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.64142 * 305.70316 * 11 10 9 13 13 C 1.55150 * 110.72108 * 182.55796 * 11 10 9 14 14 C 1.54913 * 101.58162 * 206.13560 * 13 11 10 15 15 N 1.47423 * 104.83095 * 37.01013 * 14 13 11 16 16 C 1.36937 * 125.64707 * 155.91227 * 15 14 13 17 17 H 1.08005 * 119.99757 * 342.04054 * 16 15 14 18 18 C 1.38809 * 120.00337 * 162.05170 * 16 15 14 19 19 N 1.31618 * 120.00566 * 156.23433 * 18 16 15 20 20 Si 1.86803 * 119.99486 * 336.24028 * 18 16 15 21 21 H 1.48490 * 109.47497 * 84.67106 * 20 18 16 22 22 H 1.48508 * 109.46950 * 204.66763 * 20 18 16 23 23 H 1.48497 * 109.47085 * 324.66439 * 20 18 16 24 24 C 1.47320 * 108.73599 * 335.71687 * 15 14 13 25 25 H 1.09000 * 109.46912 * 269.95910 * 1 2 3 26 26 H 1.09000 * 109.46731 * 29.95452 * 1 2 3 27 27 H 1.09001 * 109.47370 * 149.95428 * 1 2 3 28 28 H 1.07993 * 126.44413 * 0.03824 * 3 2 1 29 29 H 1.08004 * 125.61246 * 180.02562 * 4 3 2 30 30 H 0.96997 * 119.99866 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47463 * 299.99805 * 10 9 7 32 32 H 1.09002 * 109.47502 * 60.00171 * 10 9 7 33 33 H 1.09007 * 111.00630 * 324.20643 * 13 11 10 34 34 H 1.08998 * 111.00773 * 88.02527 * 13 11 10 35 35 H 1.09006 * 110.36816 * 155.84743 * 14 13 11 36 36 H 1.09004 * 110.36215 * 278.06136 * 14 13 11 37 37 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.05796 * 241.87603 * 24 15 14 39 39 H 1.08992 * 109.85181 * 120.61349 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 8 3.6005 -0.6647 0.0041 6 6 2.3220 -1.0956 -0.0006 7 6 1.8843 -2.4953 -0.0001 8 8 0.6968 -2.7615 0.0009 9 7 2.7971 -3.4868 -0.0008 10 6 2.3598 -4.8850 -0.0009 11 6 3.5843 -5.8024 -0.0024 12 1 4.2480 -5.5561 -0.8313 13 6 3.1543 -7.2917 -0.0673 14 6 4.3595 -7.9930 0.6077 15 7 4.7736 -7.0771 1.6861 16 6 5.4570 -7.4340 2.8178 17 1 5.4875 -8.4685 3.1265 18 6 6.1103 -6.4662 3.5684 19 7 6.3574 -6.6780 4.8437 20 14 6.6388 -4.8631 2.7683 21 1 5.5020 -3.9078 2.7756 22 1 7.7771 -4.2835 3.5258 23 1 7.0577 -5.1234 1.3676 24 6 4.3349 -5.7132 1.3430 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 2.0307 2.1595 0.0006 29 1 4.5047 1.2916 -0.0003 30 1 3.7436 -3.2747 -0.0020 31 1 1.7614 -5.0786 0.8893 32 1 1.7604 -5.0783 -0.8906 33 1 2.2379 -7.4589 0.4988 34 1 3.0386 -7.6204 -1.1001 35 1 4.0556 -8.9543 1.0222 36 1 5.1695 -8.1287 -0.1090 37 1 6.8143 -6.0019 5.3680 38 1 5.1992 -5.0567 1.2426 39 1 3.6665 -5.3340 2.1160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028396490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:45 Heat of formation + Delta-G solvation = 4.850191 kcal Electronic energy + Delta-G solvation = -21638.862521 eV Core-core repulsion = 18356.028588 eV Total energy + Delta-G solvation = -3282.833933 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.86250 -39.57263 -37.98968 -35.03530 -34.07617 -32.59550 -30.97373 -30.21743 -28.81254 -27.71145 -25.73017 -23.90622 -22.67199 -21.37442 -20.56945 -20.28292 -19.71826 -18.18555 -16.95827 -16.57935 -16.25666 -16.15715 -15.78980 -14.85479 -14.58511 -14.12784 -13.57765 -13.52866 -13.34679 -13.18203 -13.17064 -12.79990 -12.70551 -12.49141 -11.98877 -11.96298 -11.59054 -11.31754 -10.98169 -10.74343 -10.58708 -10.25326 -10.10830 -9.89683 -9.88222 -9.36142 -9.17582 -8.71079 -8.63415 -7.07884 -5.96065 -3.24348 0.92321 2.15247 2.56970 3.10102 3.19862 3.32317 3.43720 3.48077 4.49664 4.53321 4.58431 4.71239 4.83792 5.00980 5.04830 5.23136 5.27081 5.33657 5.42737 5.56594 5.57736 5.61028 5.77346 5.82414 5.85815 5.96083 6.00815 6.06601 6.20173 6.25299 6.33912 6.44002 6.57760 6.68813 6.72229 6.77463 7.42989 7.69881 8.03800 8.30261 8.82377 9.68161 10.16974 11.20508 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.005030 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.623955 B = 5564.833928 C = 6554.883329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.089 4.089 3 C -0.227 4.227 4 C -0.004 4.004 5 O -0.163 6.163 6 C -0.084 4.084 7 C 0.602 3.398 8 O -0.522 6.522 9 N -0.716 5.716 10 C 0.132 3.868 11 C -0.117 4.117 12 H 0.081 0.919 13 C -0.121 4.121 14 C 0.132 3.868 15 N -0.610 5.610 16 C -0.243 4.243 17 H 0.093 0.907 18 C 0.022 3.978 19 N -0.906 5.906 20 Si 0.885 3.115 21 H -0.286 1.286 22 H -0.304 1.304 23 H -0.280 1.280 24 C 0.124 3.876 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.210 0.790 30 H 0.406 0.594 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.025 0.975 37 H 0.263 0.737 38 H 0.024 0.976 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.271 13.479 -13.307 20.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.246 4.246 4 C -0.074 4.074 5 O -0.058 6.058 6 C -0.136 4.136 7 C 0.388 3.612 8 O -0.401 6.401 9 N -0.366 5.366 10 C 0.009 3.991 11 C -0.136 4.136 12 H 0.099 0.901 13 C -0.159 4.159 14 C 0.007 3.993 15 N -0.337 5.337 16 C -0.370 4.370 17 H 0.111 0.889 18 C -0.177 4.177 19 N -0.550 5.550 20 Si 0.717 3.283 21 H -0.213 1.213 22 H -0.232 1.232 23 H -0.207 1.207 24 C -0.001 4.001 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.173 0.827 29 H 0.226 0.774 30 H 0.241 0.759 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.751 13.042 -13.055 20.423 hybrid contribution 1.085 1.450 -0.284 1.833 sum -7.666 14.492 -13.339 21.135 Atomic orbital electron populations 1.20422 0.88186 1.03478 1.02966 1.20640 0.97684 0.90944 0.99946 1.21733 0.92418 1.00116 1.10325 1.24380 1.00013 0.80642 1.02348 1.84092 1.28394 1.22743 1.70545 1.21937 0.81513 0.94950 1.15193 1.16504 0.85764 0.81816 0.77073 1.90833 1.15610 1.82411 1.51207 1.45987 1.10113 1.06620 1.73860 1.21510 0.96655 0.78256 1.02726 1.22471 0.96073 0.95790 0.99311 0.90078 1.22730 0.99593 0.93213 1.00414 1.21616 0.93418 0.94125 0.90143 1.44863 1.65784 1.02333 1.20746 1.18678 1.25445 0.95950 0.96941 0.88895 1.24950 0.99565 0.97657 0.95532 1.69858 1.44347 1.35693 1.05099 0.86915 0.77835 0.84772 0.78740 1.21316 1.23215 1.20717 1.21766 0.95836 0.89079 0.93411 0.90761 0.91583 0.89453 0.82682 0.77366 0.75897 0.90524 0.90908 0.90810 0.91159 0.93105 0.95763 0.92720 0.95882 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.81 36.01 0.35 -0.67 16 2 C -0.09 -1.11 6.20 -104.43 -0.65 -1.75 16 3 C -0.23 -2.23 10.83 -39.89 -0.43 -2.66 16 4 C 0.00 -0.04 12.08 29.63 0.36 0.32 16 5 O -0.16 -2.11 10.40 5.00 0.05 -2.06 16 6 C -0.08 -1.19 7.13 -36.80 -0.26 -1.45 16 7 C 0.60 9.37 7.79 -12.87 -0.10 9.27 16 8 O -0.52 -9.00 14.74 5.19 0.08 -8.92 16 9 N -0.72 -10.64 5.43 -61.62 -0.33 -10.97 16 10 C 0.13 1.92 5.00 -4.04 -0.02 1.90 16 11 C -0.12 -1.87 2.98 -88.79 -0.26 -2.13 16 12 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 13 C -0.12 -1.82 6.54 -24.58 -0.16 -1.98 16 14 C 0.13 2.54 7.23 -2.53 -0.02 2.52 16 15 N -0.61 -14.78 3.22 -169.83 -0.55 -15.33 16 16 C -0.24 -6.97 10.56 -15.06 -0.16 -7.13 16 17 H 0.09 2.80 8.06 -52.48 -0.42 2.37 16 18 C 0.02 0.64 5.43 -17.43 -0.09 0.54 16 19 N -0.91 -28.24 13.97 55.49 0.78 -27.47 16 20 Si 0.89 22.86 24.38 -169.99 -4.15 18.72 16 21 H -0.29 -7.12 6.83 56.52 0.39 -6.74 16 22 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 23 H -0.28 -7.08 6.87 56.52 0.39 -6.70 16 24 C 0.12 2.66 4.55 -2.90 -0.01 2.65 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 1.08 6.45 -51.93 -0.33 0.74 16 28 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.21 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.41 5.81 8.16 -40.82 -0.33 5.47 16 31 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 1.09 8.05 -51.92 -0.42 0.67 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 38 H 0.02 0.54 3.55 -51.93 -0.18 0.36 16 39 H 0.04 0.99 7.73 -51.93 -0.40 0.58 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -33.94 320.49 -6.23 -40.17 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.48 Total: 1.60 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -1.46 Total: -0.57 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.11 Total: -53.77 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.13 Total: -10.98 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -4.15 Total: 18.72 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.94 -6.23 -40.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028396490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.021 kcal (2) G-P(sol) polarization free energy of solvation -33.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds