Wall clock time and date at job start Tue Mar 31 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.40366 * 126.64541 * 2 1 4 4 C 1.35131 * 107.11094 * 180.02562 * 3 2 1 5 5 O 1.33924 * 108.77148 * 359.77128 * 4 3 2 6 6 C 1.34919 * 109.38419 * 0.38018 * 5 4 3 7 7 C 1.46653 * 125.98697 * 179.88629 * 6 5 4 8 8 O 1.21696 * 119.99989 * 179.69088 * 7 6 5 9 9 N 1.34774 * 120.00233 * 359.68995 * 7 6 5 10 10 C 1.46500 * 119.99832 * 180.02562 * 9 7 6 11 11 C 1.53006 * 109.47114 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.64142 * 305.70316 * 11 10 9 13 13 C 1.55150 * 110.72108 * 182.55796 * 11 10 9 14 14 C 1.54913 * 101.58162 * 206.13560 * 13 11 10 15 15 N 1.47423 * 104.83095 * 37.01013 * 14 13 11 16 16 C 1.36937 * 125.64707 * 155.91227 * 15 14 13 17 17 H 1.08005 * 119.99757 * 342.04054 * 16 15 14 18 18 C 1.38809 * 120.00337 * 162.05170 * 16 15 14 19 19 N 1.31618 * 120.00566 * 156.23433 * 18 16 15 20 20 Si 1.86803 * 119.99486 * 336.24028 * 18 16 15 21 21 H 1.48490 * 109.47497 * 84.67106 * 20 18 16 22 22 H 1.48508 * 109.46950 * 204.66763 * 20 18 16 23 23 H 1.48497 * 109.47085 * 324.66439 * 20 18 16 24 24 C 1.47320 * 108.73599 * 335.71687 * 15 14 13 25 25 H 1.09000 * 109.46912 * 269.95910 * 1 2 3 26 26 H 1.09000 * 109.46731 * 29.95452 * 1 2 3 27 27 H 1.09001 * 109.47370 * 149.95428 * 1 2 3 28 28 H 1.07993 * 126.44413 * 0.03824 * 3 2 1 29 29 H 1.08004 * 125.61246 * 180.02562 * 4 3 2 30 30 H 0.96997 * 119.99866 * 359.97438 * 9 7 6 31 31 H 1.08999 * 109.47463 * 299.99805 * 10 9 7 32 32 H 1.09002 * 109.47502 * 60.00171 * 10 9 7 33 33 H 1.09007 * 111.00630 * 324.20643 * 13 11 10 34 34 H 1.08998 * 111.00773 * 88.02527 * 13 11 10 35 35 H 1.09006 * 110.36816 * 155.84743 * 14 13 11 36 36 H 1.09004 * 110.36215 * 278.06136 * 14 13 11 37 37 H 0.96998 * 120.00410 * 179.97438 * 19 18 16 38 38 H 1.09003 * 110.05796 * 241.87603 * 24 15 14 39 39 H 1.08992 * 109.85181 * 120.61349 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 8 3.6005 -0.6647 0.0041 6 6 2.3220 -1.0956 -0.0006 7 6 1.8843 -2.4953 -0.0001 8 8 0.6968 -2.7615 0.0009 9 7 2.7971 -3.4868 -0.0008 10 6 2.3598 -4.8850 -0.0009 11 6 3.5843 -5.8024 -0.0024 12 1 4.2480 -5.5561 -0.8313 13 6 3.1543 -7.2917 -0.0673 14 6 4.3595 -7.9930 0.6077 15 7 4.7736 -7.0771 1.6861 16 6 5.4570 -7.4340 2.8178 17 1 5.4875 -8.4685 3.1265 18 6 6.1103 -6.4662 3.5684 19 7 6.3574 -6.6780 4.8437 20 14 6.6388 -4.8631 2.7683 21 1 5.5020 -3.9078 2.7756 22 1 7.7771 -4.2835 3.5258 23 1 7.0577 -5.1234 1.3676 24 6 4.3349 -5.7132 1.3430 25 1 -0.3633 -0.0007 1.0277 26 1 -0.3633 0.8904 -0.5131 27 1 -0.3634 -0.8896 -0.5145 28 1 2.0307 2.1595 0.0006 29 1 4.5047 1.2916 -0.0003 30 1 3.7436 -3.2747 -0.0020 31 1 1.7614 -5.0786 0.8893 32 1 1.7604 -5.0783 -0.8906 33 1 2.2379 -7.4589 0.4988 34 1 3.0386 -7.6204 -1.1001 35 1 4.0556 -8.9543 1.0222 36 1 5.1695 -8.1287 -0.1090 37 1 6.8143 -6.0019 5.3680 38 1 5.1992 -5.0567 1.2426 39 1 3.6665 -5.3340 2.1160 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028396490.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:44 Heat of formation + Delta-G solvation = -19.787254 kcal Electronic energy + Delta-G solvation = -21639.930881 eV Core-core repulsion = 18356.028588 eV Total energy + Delta-G solvation = -3283.902292 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.71643 -40.76136 -39.48059 -36.29998 -35.07341 -34.48602 -32.43284 -31.38190 -30.23981 -28.74748 -27.29905 -25.50532 -23.72770 -22.39884 -21.88979 -21.78554 -20.80888 -19.23429 -18.95305 -17.86835 -17.45635 -17.13926 -17.04269 -16.31373 -15.84516 -15.53932 -15.22264 -15.01069 -14.49913 -14.33531 -14.23047 -14.04307 -13.92031 -13.55317 -13.49294 -13.26799 -13.04560 -12.81084 -12.68110 -12.43903 -12.13067 -11.86918 -11.62033 -11.29842 -11.21862 -10.79336 -10.70660 -10.32880 -9.60894 -9.10344 -8.22378 -5.46478 -0.01837 1.24703 1.32160 1.37508 1.42963 1.67269 2.02888 2.17999 2.37407 2.97884 3.27778 3.60728 3.71264 3.78406 3.79466 3.84480 3.92833 4.33254 4.44503 4.49907 4.52207 4.59625 4.61922 4.70893 4.74809 4.77302 4.83469 5.00907 5.08051 5.08402 5.11504 5.18914 5.25142 5.42159 5.45540 5.65922 5.82821 6.06621 6.33315 6.73335 6.91709 7.51185 8.07934 8.97988 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019061 B = 0.005030 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.623955 B = 5564.833928 C = 6554.883329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.091 4.091 3 C -0.233 4.233 4 C 0.009 3.991 5 O -0.179 6.179 6 C -0.126 4.126 7 C 0.599 3.401 8 O -0.549 6.549 9 N -0.717 5.717 10 C 0.138 3.862 11 C -0.101 4.101 12 H 0.105 0.895 13 C -0.105 4.105 14 C 0.122 3.878 15 N -0.631 5.631 16 C -0.238 4.238 17 H 0.062 0.938 18 C -0.040 4.040 19 N -0.955 5.955 20 Si 0.951 3.049 21 H -0.276 1.276 22 H -0.309 1.309 23 H -0.268 1.268 24 C 0.119 3.881 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.186 0.814 29 H 0.253 0.747 30 H 0.409 0.591 31 H 0.059 0.941 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.047 0.953 36 H 0.037 0.963 37 H 0.262 0.738 38 H 0.014 0.986 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 15.729 -15.997 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.251 4.251 4 C -0.060 4.060 5 O -0.075 6.075 6 C -0.177 4.177 7 C 0.387 3.613 8 O -0.430 6.430 9 N -0.366 5.366 10 C 0.015 3.985 11 C -0.120 4.120 12 H 0.123 0.877 13 C -0.144 4.144 14 C -0.002 4.002 15 N -0.358 5.358 16 C -0.366 4.366 17 H 0.079 0.921 18 C -0.234 4.234 19 N -0.602 5.602 20 Si 0.782 3.218 21 H -0.203 1.203 22 H -0.238 1.238 23 H -0.194 1.194 24 C -0.006 4.006 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.087 0.913 28 H 0.204 0.796 29 H 0.269 0.731 30 H 0.244 0.756 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.133 0.867 35 H 0.065 0.935 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -9.093 15.281 -15.798 23.786 hybrid contribution 1.162 0.731 0.569 1.486 sum -7.931 16.012 -15.229 23.478 Atomic orbital electron populations 1.20442 0.87630 1.03866 1.03053 1.21058 0.98431 0.91551 0.98412 1.22115 0.92031 1.00846 1.10122 1.25358 1.01674 0.79589 0.99395 1.84072 1.27850 1.24487 1.71070 1.21763 0.82527 0.94618 1.18768 1.16736 0.85489 0.82640 0.76463 1.90804 1.16519 1.83087 1.52622 1.45994 1.10219 1.06635 1.73796 1.21433 0.95966 0.78064 1.03033 1.22397 0.96231 0.96809 0.96530 0.87732 1.22710 0.97482 0.91666 1.02524 1.21896 0.95467 0.93652 0.89208 1.45028 1.65234 1.04647 1.20911 1.18670 1.24937 0.94680 0.98351 0.92063 1.25615 1.00434 1.01516 0.95844 1.69987 1.46309 1.37306 1.06575 0.85851 0.77230 0.80770 0.77967 1.20267 1.23771 1.19404 1.21846 0.95504 0.87306 0.95934 0.90741 0.88882 0.91343 0.79640 0.73137 0.75601 0.92245 0.88559 0.90613 0.86701 0.93474 0.94530 0.92911 0.96829 0.96307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.91 9.81 71.24 0.70 -1.22 16 2 C -0.09 -2.12 6.20 -19.74 -0.12 -2.24 16 3 C -0.23 -3.82 10.83 22.07 0.24 -3.59 16 4 C 0.01 0.14 12.08 67.10 0.81 0.95 16 5 O -0.18 -4.29 10.40 -5.03 -0.05 -4.35 16 6 C -0.13 -3.43 7.13 24.07 0.17 -3.26 16 7 C 0.60 18.37 7.79 86.44 0.67 19.04 16 8 O -0.55 -18.96 14.74 -4.34 -0.06 -19.02 16 9 N -0.72 -20.43 5.43 -467.10 -2.53 -22.96 16 10 C 0.14 3.77 5.00 86.38 0.43 4.20 16 11 C -0.10 -2.92 2.98 -9.61 -0.03 -2.95 16 12 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 13 C -0.11 -2.82 6.54 31.99 0.21 -2.61 16 14 C 0.12 4.47 7.23 86.86 0.63 5.09 16 15 N -0.63 -30.42 3.22 -691.22 -2.22 -32.64 16 16 C -0.24 -13.98 10.56 84.03 0.89 -13.09 16 17 H 0.06 3.88 8.06 -2.91 -0.02 3.85 16 18 C -0.04 -2.39 5.43 84.86 0.46 -1.93 16 19 N -0.95 -61.63 13.97 21.65 0.30 -61.33 16 20 Si 0.95 48.05 24.38 68.60 1.67 49.72 16 21 H -0.28 -13.31 6.83 99.48 0.68 -12.63 16 22 H -0.31 -15.69 7.11 99.48 0.71 -14.98 16 23 H -0.27 -12.83 6.87 99.48 0.68 -12.15 16 24 C 0.12 4.97 4.55 86.67 0.39 5.37 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.68 6.45 -2.39 -0.02 1.66 16 28 H 0.19 1.79 8.06 -2.91 -0.02 1.77 16 29 H 0.25 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.41 11.09 8.16 -92.71 -0.76 10.33 16 31 H 0.06 1.84 8.01 -2.39 -0.02 1.82 16 32 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.08 2.02 8.05 -2.38 -0.02 2.01 16 34 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.01 0.63 3.55 -2.39 -0.01 0.62 16 39 H 0.02 0.87 7.73 -2.39 -0.02 0.86 16 Total: -1.00 -77.06 320.49 2.81 -74.25 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.26 Total: 12.55 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: 5.45 Total: 3.78 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.46 Total: -116.94 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.12 Total: -23.37 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.67 Total: 49.72 kcal Total: -77.06 2.81 -74.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028396490.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.466 kcal (2) G-P(sol) polarization free energy of solvation -77.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds