Wall clock time and date at job start Tue Mar 31 2020 00:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33664 * 125.79717 * 2 1 4 4 C 1.34213 * 110.90410 * 180.28819 * 3 2 1 5 5 C 1.34173 * 109.12684 * 359.72704 * 4 3 2 6 6 C 1.36415 * 125.80533 * 179.81463 * 2 1 3 7 7 C 1.47379 * 127.19233 * 359.97438 * 6 2 1 8 8 O 1.21606 * 119.99839 * 359.71015 * 7 6 2 9 9 N 1.34771 * 119.99728 * 179.71346 * 7 6 2 10 10 C 1.46505 * 119.99622 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09004 * 110.89054 * 54.29462 * 11 10 9 13 13 C 1.55155 * 111.00566 * 178.17910 * 11 10 9 14 14 C 1.54328 * 102.93989 * 153.57704 * 13 11 10 15 15 N 1.47017 * 107.27427 * 337.80452 * 14 13 11 16 16 C 1.36935 * 125.64695 * 178.97319 * 15 14 13 17 17 H 1.07998 * 119.99696 * 179.97438 * 16 15 14 18 18 C 1.38808 * 120.00427 * 359.97438 * 16 15 14 19 19 N 1.31622 * 119.99804 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00132 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46813 * 89.99842 * 20 18 16 22 22 H 1.48498 * 109.46992 * 209.99484 * 20 18 16 23 23 H 1.48498 * 109.47169 * 329.99865 * 20 18 16 24 24 C 1.47472 * 108.72093 * 358.98012 * 15 14 13 25 25 H 1.09006 * 109.46664 * 270.18588 * 1 2 3 26 26 H 1.08994 * 109.47532 * 30.18731 * 1 2 3 27 27 H 1.09004 * 109.46536 * 150.19107 * 1 2 3 28 28 H 1.07999 * 125.43357 * 179.72277 * 4 3 2 29 29 H 1.08000 * 127.02618 * 179.97438 * 5 4 3 30 30 H 0.96996 * 120.00772 * 359.97438 * 9 7 6 31 31 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 32 32 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 33 33 H 1.08997 * 110.71839 * 271.93714 * 13 11 10 34 34 H 1.08992 * 110.71955 * 35.03533 * 13 11 10 35 35 H 1.09003 * 109.88521 * 97.22841 * 14 13 11 36 36 H 1.09010 * 109.87963 * 218.23253 * 14 13 11 37 37 H 0.97001 * 119.99817 * 180.02562 * 19 18 16 38 38 H 1.09002 * 110.34661 * 265.24997 * 24 15 14 39 39 H 1.08994 * 110.40287 * 142.91779 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0841 0.0000 4 6 3.5858 0.7392 -0.0063 5 6 3.6849 -0.5989 -0.0046 6 6 2.3051 -1.1063 0.0036 7 6 1.8741 -2.5157 0.0087 8 8 0.6892 -2.7892 0.0154 9 7 2.7932 -3.5014 0.0059 10 6 2.3648 -4.9024 0.0104 11 6 3.5951 -5.8119 0.0054 12 1 4.2653 -5.5637 0.8285 13 6 3.1819 -7.3066 0.0560 14 6 4.3716 -8.0172 -0.6232 15 7 5.0547 -7.0208 -1.4610 16 6 6.1747 -7.2460 -2.2161 17 1 6.6022 -6.4446 -2.8002 18 6 6.7605 -8.5043 -2.2307 19 7 6.2397 -9.4810 -1.5183 20 14 8.2879 -8.8117 -3.2612 21 1 9.4984 -8.5305 -2.4481 22 1 8.3082 -10.2284 -3.7057 23 1 8.2713 -7.9204 -4.4488 24 6 4.3344 -5.7384 -1.3539 25 1 -0.3633 0.0033 1.0277 26 1 -0.3634 0.8882 -0.5167 27 1 -0.3632 -0.8918 -0.5109 28 1 4.4171 1.4287 -0.0119 29 1 4.5928 -1.1838 -0.0088 30 1 3.7383 -3.2833 0.0003 31 1 1.7715 -5.0980 0.9037 32 1 1.7629 -5.1011 -0.8763 33 1 3.0706 -7.6412 1.0874 34 1 2.2608 -7.4711 -0.5029 35 1 5.0574 -8.3978 0.1338 36 1 4.0090 -8.8387 -1.2412 37 1 6.6493 -10.3602 -1.5282 38 1 3.6189 -5.6363 -2.1698 39 1 5.0379 -4.9059 -1.3587 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028398254.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:01 Heat of formation + Delta-G solvation = -26.683484 kcal Electronic energy + Delta-G solvation = -21147.167028 eV Core-core repulsion = 17862.965693 eV Total energy + Delta-G solvation = -3284.201335 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -43.51210 -40.58728 -39.20340 -36.06488 -34.42767 -33.90242 -32.76289 -31.60006 -29.97504 -28.01872 -27.16996 -25.50570 -23.84397 -22.18522 -21.75064 -21.47885 -20.55959 -19.01685 -18.62493 -17.36428 -17.22505 -16.88177 -16.62902 -16.39443 -15.82070 -15.59187 -15.20835 -14.60028 -14.36648 -14.09474 -13.95165 -13.83721 -13.78622 -13.73340 -13.40320 -13.02553 -12.78058 -12.66998 -12.61560 -12.02541 -11.91027 -11.85219 -11.54726 -11.46407 -11.02041 -10.83093 -10.70341 -10.09506 -9.50290 -8.89917 -7.84870 -5.20603 0.34488 1.14552 1.46072 1.48091 1.56758 1.85744 2.27990 2.33748 2.49743 3.33337 3.59980 3.63357 3.74789 3.88104 3.92751 4.02677 4.04312 4.38345 4.44381 4.62336 4.64058 4.64537 4.70709 4.76825 4.81680 4.90200 4.93372 5.06014 5.08165 5.22917 5.34910 5.39603 5.45631 5.48469 5.67888 5.78232 6.05243 6.20232 6.55130 7.10569 7.20115 7.78125 8.42610 9.25629 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.003432 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.278618 B = 8155.839289 C = 8962.582569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.068 3.932 3 O -0.181 6.181 4 C -0.029 4.029 5 C -0.201 4.201 6 C -0.272 4.272 7 C 0.585 3.415 8 O -0.578 6.578 9 N -0.711 5.711 10 C 0.146 3.854 11 C -0.095 4.095 12 H 0.089 0.911 13 C -0.122 4.122 14 C 0.183 3.817 15 N -0.629 5.629 16 C -0.244 4.244 17 H 0.083 0.917 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.979 3.021 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.269 1.269 24 C 0.138 3.862 25 H 0.097 0.903 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.249 0.751 29 H 0.174 0.826 30 H 0.410 0.590 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.013 0.987 36 H 0.004 0.996 37 H 0.246 0.754 38 H 0.017 0.983 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.516 20.808 5.527 22.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 O -0.077 6.077 4 C -0.094 4.094 5 C -0.220 4.220 6 C -0.277 4.277 7 C 0.374 3.626 8 O -0.461 6.461 9 N -0.362 5.362 10 C 0.022 3.978 11 C -0.115 4.115 12 H 0.108 0.892 13 C -0.161 4.161 14 C 0.058 3.942 15 N -0.356 5.356 16 C -0.373 4.373 17 H 0.101 0.899 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.194 1.194 24 C 0.013 3.987 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.110 0.890 28 H 0.264 0.736 29 H 0.192 0.808 30 H 0.247 0.753 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.031 0.969 36 H 0.022 0.978 37 H 0.056 0.944 38 H 0.035 0.965 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.298 20.721 5.470 22.981 hybrid contribution 1.583 -0.971 -0.631 1.961 sum -6.716 19.750 4.840 21.414 Atomic orbital electron populations 1.20626 0.82828 1.05226 1.04997 1.23145 0.94980 0.83184 0.97201 1.83791 1.18032 1.34649 1.71278 1.24657 0.83484 0.96764 1.04513 1.23175 0.96244 0.95457 1.07144 1.21255 0.95135 0.93133 1.18158 1.17482 0.85102 0.84635 0.75356 1.90717 1.17814 1.84743 1.52785 1.45755 1.10260 1.05789 1.74355 1.21183 0.95603 0.78843 1.02177 1.22414 0.96100 0.94842 0.98136 0.89235 1.22719 0.97973 0.94017 1.01393 1.20914 0.90913 0.90412 0.91958 1.44826 1.29721 1.07579 1.53459 1.19480 1.01828 0.95901 1.20043 0.89884 1.25676 1.02675 0.95900 1.01832 1.70197 1.42521 1.01924 1.45454 0.85066 0.79095 0.76669 0.78427 1.21058 1.22248 1.19379 1.21750 0.93881 0.88256 0.94772 0.88459 0.88259 0.89045 0.73556 0.80842 0.75340 0.90545 0.92173 0.89524 0.91016 0.96870 0.97806 0.94448 0.96536 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.88 71.24 0.70 -0.69 16 2 C 0.07 1.45 7.37 25.26 0.19 1.64 16 3 O -0.18 -3.33 10.52 4.38 0.05 -3.28 16 4 C -0.03 -0.41 12.03 66.89 0.80 0.40 16 5 C -0.20 -3.53 10.60 23.65 0.25 -3.28 16 6 C -0.27 -6.43 6.31 -18.99 -0.12 -6.55 16 7 C 0.58 16.41 7.81 86.65 0.68 17.08 16 8 O -0.58 -19.27 14.85 -4.05 -0.06 -19.34 16 9 N -0.71 -18.06 5.45 -466.42 -2.54 -20.60 16 10 C 0.15 4.01 5.12 86.38 0.44 4.46 16 11 C -0.10 -3.00 3.07 -9.40 -0.03 -3.03 16 12 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 13 C -0.12 -4.33 6.42 31.78 0.20 -4.13 16 14 C 0.18 9.06 5.37 86.73 0.47 9.53 16 15 N -0.63 -32.29 3.40 -691.87 -2.35 -34.64 16 16 C -0.24 -13.67 10.28 84.03 0.86 -12.81 16 17 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 18 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 19 N -0.95 -57.72 10.31 21.65 0.22 -57.49 16 20 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 22 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C 0.14 5.43 6.56 86.85 0.57 6.00 16 25 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.09 1.94 6.49 -2.38 -0.02 1.93 16 28 H 0.25 1.11 8.06 -2.91 -0.02 1.08 16 29 H 0.17 2.34 7.74 -2.91 -0.02 2.31 16 30 H 0.41 8.92 7.60 -92.71 -0.70 8.21 16 31 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.06 1.80 8.03 -2.39 -0.02 1.79 16 33 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 35 H 0.01 0.72 7.38 -2.39 -0.02 0.70 16 36 H 0.00 0.21 7.51 -2.38 -0.02 0.19 16 37 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 38 H 0.02 0.68 7.96 -2.39 -0.02 0.66 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -73.15 325.51 3.18 -69.97 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.35 Total: 12.40 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: 5.49 Total: 5.19 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -4.67 Total: -112.74 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.01 Total: -22.62 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -73.15 3.18 -69.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028398254.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.287 kcal (2) G-P(sol) polarization free energy of solvation -73.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds