Wall clock time and date at job start Tue Mar 31 2020 00:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34178 * 125.43733 * 2 1 4 4 C 1.47017 * 105.95526 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19112 * 180.02562 * 4 3 2 6 6 O 1.21611 * 119.99759 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99493 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99638 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47097 * 179.97438 * 8 7 5 10 10 H 1.09005 * 110.63669 * 51.85851 * 9 8 7 11 11 C 1.55156 * 110.71830 * 174.99627 * 9 8 7 12 12 C 1.54906 * 101.61451 * 154.02508 * 11 9 8 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 C 1.36937 * 125.62509 * 204.14198 * 13 12 11 15 15 H 1.08004 * 119.99479 * 179.91598 * 14 13 12 16 16 C 1.38806 * 120.00537 * 359.91425 * 14 13 12 17 17 N 1.31628 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00199 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47139 * 59.99880 * 18 16 14 20 20 H 1.48502 * 109.47021 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46988 * 299.99649 * 18 16 14 22 22 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 23 23 C 1.36410 * 105.61622 * 0.26768 * 4 3 2 24 24 O 1.33662 * 108.39490 * 359.57097 * 23 4 3 25 25 H 1.08998 * 109.47309 * 89.99646 * 1 2 3 26 26 H 1.09004 * 109.46946 * 209.99996 * 1 2 3 27 27 H 1.09000 * 109.47184 * 329.99391 * 1 2 3 28 28 H 1.08008 * 127.01987 * 0.02868 * 3 2 1 29 29 H 0.97001 * 120.00552 * 359.97438 * 7 5 4 30 30 H 1.09006 * 109.47066 * 59.99373 * 8 7 5 31 31 H 1.09000 * 109.47236 * 299.99784 * 8 7 5 32 32 H 1.09002 * 111.00677 * 272.12092 * 11 9 8 33 33 H 1.09002 * 111.00564 * 35.93350 * 11 9 8 34 34 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 35 35 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 36 36 H 0.96994 * 120.00079 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.88206 * 239.55467 * 22 13 12 38 38 H 1.09007 * 109.88177 * 118.39340 * 22 13 12 39 39 H 1.07998 * 125.80735 * 179.73514 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9024 1.4126 0.0014 6 8 4.8318 2.6267 0.0020 7 7 6.1067 0.8075 0.0014 8 6 7.3308 1.6124 0.0027 9 6 8.5495 0.6873 0.0031 10 1 8.4751 -0.0463 -0.7997 11 6 9.8609 1.5070 -0.1221 12 6 10.8846 0.5631 0.5568 13 7 10.1458 -0.0529 1.6746 14 6 10.7063 -0.5748 2.8097 15 1 10.0764 -1.0046 3.5745 16 6 12.0840 -0.5515 2.9775 17 7 12.8518 -0.0281 2.0452 18 14 12.8486 -1.2641 4.5258 19 1 12.4984 -2.7031 4.6336 20 1 14.3250 -1.1179 4.4611 21 1 12.3304 -0.5381 5.7130 22 6 8.7083 -0.0124 1.3693 23 6 3.5790 -0.7581 -0.0052 24 8 2.2851 -1.0934 0.0004 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.9594 2.1231 0.0004 29 1 6.1630 -0.1608 0.0013 30 1 7.3517 2.2406 0.8933 31 1 7.3526 2.2422 -0.8867 32 1 10.1182 1.6752 -1.1679 33 1 9.7840 2.4518 0.4160 34 1 11.2183 -0.2019 -0.1444 35 1 11.7352 1.1325 0.9314 36 1 13.8145 -0.0115 2.1626 37 1 8.1817 0.5524 2.1385 38 1 8.3122 -1.0265 1.3146 39 1 4.4102 -1.4475 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028495700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:10 Heat of formation + Delta-G solvation = -2.814966 kcal Electronic energy + Delta-G solvation = -20913.375908 eV Core-core repulsion = 17630.209589 eV Total energy + Delta-G solvation = -3283.166319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.77583 -39.44349 -37.60645 -34.67091 -33.32789 -32.74162 -32.04049 -29.80263 -28.33380 -26.93126 -25.63195 -24.18733 -22.75173 -21.30513 -20.43336 -19.85974 -19.34522 -17.91528 -16.88180 -16.55647 -16.21434 -15.92019 -15.30036 -14.77322 -14.57268 -14.31039 -13.69636 -13.50047 -13.37416 -13.31925 -13.01103 -12.81388 -12.51748 -12.12872 -11.76653 -11.71887 -11.51433 -10.97006 -10.79785 -10.45131 -10.18113 -10.06740 -9.97982 -9.96453 -9.77998 -9.52456 -9.01409 -8.79513 -8.65762 -6.84767 -5.66432 -3.08253 1.17138 1.82963 2.57348 3.18337 3.34991 3.39854 3.43996 3.45384 4.28406 4.47419 4.49520 4.73003 4.98598 5.07555 5.09563 5.24114 5.28471 5.33568 5.39590 5.51476 5.52693 5.69336 5.74442 5.87337 6.06265 6.09517 6.12899 6.33712 6.41915 6.53569 6.57757 6.70766 6.76193 6.89277 7.49969 7.53233 7.61179 7.84681 8.23852 8.35400 9.21031 9.81992 10.46732 11.37557 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028839 B = 0.003172 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.659224 B = 8825.364174 C = 9458.635280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.019 4.019 3 C -0.163 4.163 4 C -0.228 4.228 5 C 0.583 3.417 6 O -0.540 6.540 7 N -0.721 5.721 8 C 0.133 3.867 9 C -0.115 4.115 10 H 0.076 0.924 11 C -0.135 4.135 12 C 0.152 3.848 13 N -0.605 5.605 14 C -0.224 4.224 15 H 0.076 0.924 16 C -0.011 4.011 17 N -0.923 5.923 18 Si 0.915 3.085 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.141 3.859 23 C 0.019 3.981 24 O -0.173 6.173 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.158 0.842 29 H 0.398 0.602 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.012 0.988 35 H 0.107 0.893 36 H 0.253 0.747 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 -0.909 -6.843 21.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.067 4.067 3 C -0.183 4.183 4 C -0.233 4.233 5 C 0.370 3.630 6 O -0.418 6.418 7 N -0.372 5.372 8 C 0.010 3.990 9 C -0.134 4.134 10 H 0.094 0.906 11 C -0.175 4.175 12 C 0.027 3.973 13 N -0.331 5.331 14 C -0.352 4.352 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.571 5.571 18 Si 0.745 3.255 19 H -0.212 1.212 20 H -0.215 1.215 21 H -0.211 1.211 22 C 0.015 3.985 23 C -0.051 4.051 24 O -0.069 6.069 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.176 0.824 29 H 0.232 0.768 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.030 0.970 35 H 0.125 0.875 36 H 0.063 0.937 37 H 0.042 0.958 38 H 0.035 0.965 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -20.627 -0.341 -6.738 21.702 hybrid contribution 0.653 -0.808 0.767 1.291 sum -19.975 -1.149 -5.972 20.880 Atomic orbital electron populations 1.20324 0.84681 1.04251 1.03670 1.22319 0.94158 0.83662 1.06570 1.22495 0.90024 0.99703 1.06040 1.21563 0.94807 0.93314 1.13580 1.17272 0.82246 0.87094 0.76343 1.90778 1.87199 1.13682 1.50183 1.45937 1.05681 1.10452 1.75116 1.21492 0.81628 0.93544 1.02315 1.22450 0.94154 0.97745 0.99064 0.90568 1.23011 0.95036 0.99270 1.00145 1.21944 0.94262 0.93286 0.87793 1.44509 0.99512 1.69919 1.19141 1.19030 0.90266 1.31366 0.94567 0.90596 1.24792 0.95969 1.01427 0.98479 1.69787 1.03778 1.50322 1.33254 0.86146 0.78194 0.78723 0.82393 1.21230 1.21542 1.21136 1.21331 0.88005 0.96363 0.92767 1.24458 0.84261 0.95474 1.00930 1.83723 1.16488 1.35517 1.71210 0.89978 0.90390 0.89171 0.82400 0.76774 0.91047 0.91446 0.92083 0.91785 0.96986 0.87527 0.93652 0.95768 0.96463 0.77074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.40 36.00 0.37 -0.02 16 2 C -0.02 -0.17 7.28 -35.74 -0.26 -0.43 16 3 C -0.16 -1.84 10.90 -37.46 -0.41 -2.25 16 4 C -0.23 -2.80 6.31 -103.28 -0.65 -3.46 16 5 C 0.58 8.63 7.81 -12.54 -0.10 8.53 16 6 O -0.54 -10.01 16.98 5.27 0.09 -9.92 16 7 N -0.72 -9.46 5.46 -61.39 -0.34 -9.80 16 8 C 0.13 1.99 5.02 -4.04 -0.02 1.97 16 9 C -0.11 -1.88 2.95 -88.79 -0.26 -2.15 16 10 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.14 -2.49 6.53 -24.58 -0.16 -2.65 16 12 C 0.15 3.64 5.89 -2.50 -0.01 3.63 16 13 N -0.60 -15.39 3.40 -170.04 -0.58 -15.97 16 14 C -0.22 -6.24 10.27 -15.06 -0.15 -6.40 16 15 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 16 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 17 N -0.92 -26.87 10.09 55.49 0.56 -26.31 16 18 Si 0.92 22.06 29.55 -169.99 -5.02 17.03 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.14 2.85 6.76 -3.07 -0.02 2.83 16 23 C 0.02 0.18 11.61 30.07 0.35 0.53 16 24 O -0.17 -1.74 10.52 7.65 0.08 -1.66 16 25 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.16 1.67 8.06 -52.48 -0.42 1.24 16 29 H 0.40 4.18 7.44 -40.82 -0.30 3.88 16 30 H 0.07 1.18 7.94 -51.93 -0.41 0.77 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 34 H 0.01 0.31 8.14 -51.92 -0.42 -0.12 16 35 H 0.11 2.89 5.88 -51.93 -0.31 2.59 16 36 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.02 0.50 7.69 -51.93 -0.40 0.10 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.21 1.25 7.47 -52.49 -0.39 0.85 16 LS Contribution 328.37 15.07 4.95 4.95 Total: -1.00 -33.98 328.37 -7.26 -41.24 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.58 Total: 0.72 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -1.42 Total: -0.29 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.35 Total: -52.08 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.17 Total: -11.58 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.98 -7.26 -41.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028495700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.429 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds