Wall clock time and date at job start Tue Mar 31 2020 00:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34178 * 125.43733 * 2 1 4 4 C 1.47017 * 105.95526 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.19112 * 180.02562 * 4 3 2 6 6 O 1.21611 * 119.99759 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99493 * 180.02562 * 5 4 3 8 8 C 1.46505 * 119.99638 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47097 * 179.97438 * 8 7 5 10 10 H 1.09005 * 110.63669 * 51.85851 * 9 8 7 11 11 C 1.55156 * 110.71830 * 174.99627 * 9 8 7 12 12 C 1.54906 * 101.61451 * 154.02508 * 11 9 8 13 13 N 1.47471 * 104.81210 * 323.04512 * 12 11 9 14 14 C 1.36937 * 125.62509 * 204.14198 * 13 12 11 15 15 H 1.08004 * 119.99479 * 179.91598 * 14 13 12 16 16 C 1.38806 * 120.00537 * 359.91425 * 14 13 12 17 17 N 1.31628 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00199 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47139 * 59.99880 * 18 16 14 20 20 H 1.48502 * 109.47021 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46988 * 299.99649 * 18 16 14 22 22 C 1.47017 * 108.71970 * 24.07007 * 13 12 11 23 23 C 1.36410 * 105.61622 * 0.26768 * 4 3 2 24 24 O 1.33662 * 108.39490 * 359.57097 * 23 4 3 25 25 H 1.08998 * 109.47309 * 89.99646 * 1 2 3 26 26 H 1.09004 * 109.46946 * 209.99996 * 1 2 3 27 27 H 1.09000 * 109.47184 * 329.99391 * 1 2 3 28 28 H 1.08008 * 127.01987 * 0.02868 * 3 2 1 29 29 H 0.97001 * 120.00552 * 359.97438 * 7 5 4 30 30 H 1.09006 * 109.47066 * 59.99373 * 8 7 5 31 31 H 1.09000 * 109.47236 * 299.99784 * 8 7 5 32 32 H 1.09002 * 111.00677 * 272.12092 * 11 9 8 33 33 H 1.09002 * 111.00564 * 35.93350 * 11 9 8 34 34 H 1.09008 * 110.36753 * 81.85112 * 12 11 9 35 35 H 1.09001 * 110.37094 * 204.16995 * 12 11 9 36 36 H 0.96994 * 120.00079 * 179.97438 * 17 16 14 37 37 H 1.08998 * 109.88206 * 239.55467 * 22 13 12 38 38 H 1.09007 * 109.88177 * 118.39340 * 22 13 12 39 39 H 1.07998 * 125.80735 * 179.73514 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6709 0.6029 0.0006 5 6 4.9024 1.4126 0.0014 6 8 4.8318 2.6267 0.0020 7 7 6.1067 0.8075 0.0014 8 6 7.3308 1.6124 0.0027 9 6 8.5495 0.6873 0.0031 10 1 8.4751 -0.0463 -0.7997 11 6 9.8609 1.5070 -0.1221 12 6 10.8846 0.5631 0.5568 13 7 10.1458 -0.0529 1.6746 14 6 10.7063 -0.5748 2.8097 15 1 10.0764 -1.0046 3.5745 16 6 12.0840 -0.5515 2.9775 17 7 12.8518 -0.0281 2.0452 18 14 12.8486 -1.2641 4.5258 19 1 12.4984 -2.7031 4.6336 20 1 14.3250 -1.1179 4.4611 21 1 12.3304 -0.5381 5.7130 22 6 8.7083 -0.0124 1.3693 23 6 3.5790 -0.7581 -0.0052 24 8 2.2851 -1.0934 0.0004 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.9594 2.1231 0.0004 29 1 6.1630 -0.1608 0.0013 30 1 7.3517 2.2406 0.8933 31 1 7.3526 2.2422 -0.8867 32 1 10.1182 1.6752 -1.1679 33 1 9.7840 2.4518 0.4160 34 1 11.2183 -0.2019 -0.1444 35 1 11.7352 1.1325 0.9314 36 1 13.8145 -0.0115 2.1626 37 1 8.1817 0.5524 2.1385 38 1 8.3122 -1.0265 1.3146 39 1 4.4102 -1.4475 -0.0105 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028495700.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:10 Heat of formation + Delta-G solvation = -25.778545 kcal Electronic energy + Delta-G solvation = -20914.371683 eV Core-core repulsion = 17630.209589 eV Total energy + Delta-G solvation = -3284.162094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.55125 -40.64414 -39.20104 -36.09452 -34.44037 -34.03347 -32.98585 -31.54061 -29.89365 -27.76903 -27.16571 -25.66701 -23.97756 -22.21818 -22.00393 -21.32432 -20.51923 -18.91242 -18.66174 -17.37103 -17.25287 -17.19652 -16.69205 -16.46822 -15.84050 -15.59608 -15.28527 -14.34467 -14.31962 -14.25477 -14.00547 -13.81256 -13.74530 -13.53410 -13.39185 -13.14838 -12.83444 -12.68324 -12.64914 -12.05420 -11.90537 -11.82591 -11.59580 -11.40458 -11.11590 -10.85975 -10.72947 -10.15589 -9.54287 -8.87570 -7.77246 -5.21316 0.33158 1.02708 1.46515 1.49534 1.55925 1.87832 2.12134 2.30517 2.49911 3.32253 3.56519 3.64990 3.67205 3.79382 3.98063 4.02643 4.08857 4.40470 4.45197 4.53769 4.65067 4.71014 4.74447 4.75969 4.82130 4.89673 4.91451 5.05205 5.10975 5.13468 5.31467 5.39930 5.41645 5.48178 5.66904 5.83520 6.00428 6.32425 6.50120 7.11587 7.15634 7.79684 8.42968 9.24565 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028839 B = 0.003172 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.659224 B = 8825.364174 C = 9458.635280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.010 4.010 3 C -0.194 4.194 4 C -0.263 4.263 5 C 0.584 3.416 6 O -0.587 6.587 7 N -0.710 5.710 8 C 0.144 3.856 9 C -0.093 4.093 10 H 0.101 0.899 11 C -0.123 4.123 12 C 0.152 3.848 13 N -0.629 5.629 14 C -0.240 4.240 15 H 0.080 0.920 16 C -0.068 4.068 17 N -0.949 5.949 18 Si 0.980 3.020 19 H -0.277 1.277 20 H -0.293 1.293 21 H -0.279 1.279 22 C 0.137 3.863 23 C 0.043 3.957 24 O -0.176 6.176 25 H 0.097 0.903 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.154 0.846 29 H 0.413 0.587 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.061 0.939 34 H -0.008 1.008 35 H 0.070 0.930 36 H 0.247 0.753 37 H 0.018 0.982 38 H 0.033 0.967 39 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.563 -2.339 -7.207 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.058 4.058 3 C -0.213 4.213 4 C -0.268 4.268 5 C 0.373 3.627 6 O -0.469 6.469 7 N -0.361 5.361 8 C 0.021 3.979 9 C -0.112 4.112 10 H 0.119 0.881 11 C -0.162 4.162 12 C 0.027 3.973 13 N -0.355 5.355 14 C -0.369 4.369 15 H 0.098 0.902 16 C -0.260 4.260 17 N -0.599 5.599 18 Si 0.808 3.192 19 H -0.203 1.203 20 H -0.220 1.220 21 H -0.205 1.205 22 C 0.012 3.988 23 C -0.027 4.027 24 O -0.072 6.072 25 H 0.116 0.884 26 H 0.109 0.891 27 H 0.120 0.880 28 H 0.172 0.828 29 H 0.250 0.750 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.010 0.990 35 H 0.088 0.912 36 H 0.057 0.943 37 H 0.036 0.964 38 H 0.050 0.950 39 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -22.535 -1.807 -7.107 23.698 hybrid contribution 1.177 -0.397 0.880 1.522 sum -21.359 -2.204 -6.227 22.357 Atomic orbital electron populations 1.20531 0.81908 1.05483 1.05030 1.22929 0.95603 0.82786 1.04495 1.22637 0.90280 1.00365 1.08038 1.21480 0.94119 0.94484 1.16700 1.17607 0.83126 0.86714 0.75244 1.90748 1.87851 1.15736 1.52563 1.45760 1.04750 1.11110 1.74466 1.21234 0.81645 0.93148 1.01906 1.22284 0.93648 0.97660 0.97593 0.88124 1.22856 0.94303 0.97933 1.01158 1.21739 0.94886 0.93233 0.87439 1.44832 1.01893 1.69924 1.18871 1.19417 0.90786 1.31092 0.95627 0.90249 1.25633 0.96565 1.02353 1.01499 1.70049 1.03463 1.51507 1.34896 0.85135 0.76814 0.78305 0.78979 1.20271 1.21956 1.20487 1.21518 0.85174 0.97480 0.94627 1.25064 0.84905 0.94905 0.97858 1.83771 1.16743 1.35762 1.70899 0.88437 0.89131 0.87952 0.82789 0.75005 0.92934 0.90558 0.89131 0.92055 0.98971 0.91220 0.94332 0.96352 0.94951 0.73539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 71.23 0.74 0.14 16 2 C -0.01 -0.16 7.28 24.76 0.18 0.02 16 3 C -0.19 -4.24 10.90 23.65 0.26 -3.99 16 4 C -0.26 -6.15 6.31 -18.99 -0.12 -6.27 16 5 C 0.58 16.79 7.81 86.65 0.68 17.47 16 6 O -0.59 -21.96 16.98 -4.07 -0.07 -22.03 16 7 N -0.71 -17.20 5.46 -466.39 -2.55 -19.74 16 8 C 0.14 4.05 5.02 86.38 0.43 4.48 16 9 C -0.09 -2.83 2.95 -9.61 -0.03 -2.86 16 10 H 0.10 2.66 8.14 -2.38 -0.02 2.64 16 11 C -0.12 -4.39 6.53 31.98 0.21 -4.18 16 12 C 0.15 7.38 5.89 86.85 0.51 7.89 16 13 N -0.63 -32.07 3.40 -691.89 -2.35 -34.42 16 14 C -0.24 -13.47 10.27 84.03 0.86 -12.61 16 15 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 16 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 17 N -0.95 -56.69 10.09 21.65 0.22 -56.47 16 18 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C 0.14 5.33 6.76 86.73 0.59 5.92 16 23 C 0.04 0.70 11.61 67.39 0.78 1.48 16 24 O -0.18 -3.07 10.52 4.46 0.05 -3.02 16 25 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 29 H 0.41 7.40 7.44 -92.71 -0.69 6.71 16 30 H 0.05 1.70 7.94 -2.38 -0.02 1.68 16 31 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.06 2.21 8.05 -2.39 -0.02 2.20 16 34 H -0.01 -0.40 8.14 -2.38 -0.02 -0.42 16 35 H 0.07 3.92 5.88 -2.39 -0.01 3.90 16 36 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 37 H 0.02 0.74 7.69 -2.39 -0.02 0.72 16 38 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.25 1.89 7.47 -2.91 -0.02 1.87 16 Total: -1.00 -75.80 328.37 3.25 -72.55 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: 0.37 Total: 11.35 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 5.56 Total: 4.09 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -4.68 Total: -110.63 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.02 Total: -25.05 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -75.80 3.25 -72.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028495700.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.767 kcal (2) G-P(sol) polarization free energy of solvation -75.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds