Wall clock time and date at job start Tue Mar 31 2020 00:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34170 * 125.44224 * 2 1 4 4 C 1.47018 * 105.95682 * 179.97438 * 3 2 1 5 5 C 1.47379 * 127.19068 * 180.09763 * 4 3 2 6 6 O 1.21616 * 120.00467 * 0.26602 * 5 4 3 7 7 N 1.34786 * 119.99779 * 180.26846 * 5 4 3 8 8 C 1.46499 * 120.00055 * 180.02562 * 7 5 4 9 9 C 1.52992 * 109.47044 * 179.97438 * 8 7 5 10 10 H 1.09002 * 110.64243 * 305.69844 * 9 8 7 11 11 C 1.55159 * 110.71881 * 182.55614 * 9 8 7 12 12 C 1.54906 * 101.58214 * 206.13273 * 11 9 8 13 13 N 1.47424 * 104.83018 * 37.01252 * 12 11 9 14 14 C 1.36946 * 125.64873 * 155.90386 * 13 12 11 15 15 H 1.07998 * 119.99856 * 342.05515 * 14 13 12 16 16 C 1.38804 * 119.99985 * 162.04972 * 14 13 12 17 17 N 1.31621 * 120.00172 * 156.24449 * 16 14 13 18 18 Si 1.86806 * 120.00105 * 336.24288 * 16 14 13 19 19 H 1.48497 * 109.46790 * 84.66945 * 18 16 14 20 20 H 1.48500 * 109.47277 * 204.66968 * 18 16 14 21 21 H 1.48497 * 109.47271 * 324.67258 * 18 16 14 22 22 C 1.47309 * 108.73679 * 335.71146 * 13 12 11 23 23 C 1.36415 * 105.61621 * 0.33589 * 4 3 2 24 24 O 1.33654 * 108.39206 * 359.79706 * 23 4 3 25 25 H 1.08997 * 109.47426 * 179.71446 * 1 2 3 26 26 H 1.09003 * 109.46823 * 59.71084 * 1 2 3 27 27 H 1.09004 * 109.46745 * 299.71661 * 1 2 3 28 28 H 1.08011 * 127.02054 * 0.02562 * 3 2 1 29 29 H 0.96999 * 119.99565 * 359.97438 * 7 5 4 30 30 H 1.09005 * 109.46872 * 299.99699 * 8 7 5 31 31 H 1.09002 * 109.47222 * 59.99420 * 8 7 5 32 32 H 1.08996 * 111.00894 * 324.20886 * 11 9 8 33 33 H 1.09008 * 111.00154 * 88.02406 * 11 9 8 34 34 H 1.09001 * 110.36575 * 155.84719 * 12 11 9 35 35 H 1.08998 * 110.36850 * 278.06235 * 12 11 9 36 36 H 0.97001 * 120.00467 * 179.97438 * 17 16 14 37 37 H 1.09004 * 110.06875 * 241.87498 * 22 13 12 38 38 H 1.09010 * 109.84944 * 120.61522 * 22 13 12 39 39 H 1.07995 * 125.80122 * 179.81694 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9025 1.4123 0.0029 6 8 4.8321 2.6264 0.0093 7 7 6.1069 0.8072 -0.0023 8 6 7.3310 1.6120 0.0005 9 6 8.5495 0.6868 -0.0058 10 1 8.4966 -0.0240 0.8188 11 6 9.8635 1.5092 0.0617 12 6 10.8678 0.5474 -0.6209 13 7 10.0990 -0.0959 -1.7019 14 6 10.6280 -0.6479 -2.8381 15 1 11.6305 -0.3911 -3.1469 16 6 9.8757 -1.5376 -3.5926 17 7 10.1450 -1.7092 -4.8695 18 14 8.4810 -2.4914 -2.7959 19 1 7.2501 -1.6608 -2.7959 20 1 8.2354 -3.7405 -3.5605 21 1 8.8489 -2.8310 -1.3978 22 6 8.6678 -0.0512 -1.3560 23 6 3.5790 -0.7583 -0.0068 24 8 2.2852 -1.0935 -0.0070 25 1 -0.3634 -1.0276 -0.0051 26 1 -0.3633 0.5183 -0.8874 27 1 -0.3633 0.5095 0.8926 28 1 1.9596 2.1230 0.0004 29 1 6.1630 -0.1612 -0.0071 30 1 7.3510 2.2459 -0.8860 31 1 7.3536 2.2360 0.8940 32 1 9.7713 2.4397 -0.4985 33 1 10.1495 1.7045 1.0953 34 1 11.7077 1.1063 -1.0335 35 1 11.2222 -0.1985 0.0906 36 1 9.6196 -2.3311 -5.3967 37 1 8.2741 -1.0632 -1.2610 38 1 8.1180 0.4919 -2.1248 39 1 4.4103 -1.4477 -0.0113 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028495701.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:13 Heat of formation + Delta-G solvation = -21.859865 kcal Electronic energy + Delta-G solvation = -21362.217850 eV Core-core repulsion = 18078.225682 eV Total energy + Delta-G solvation = -3283.992167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -43.60407 -40.73470 -39.43556 -36.11368 -34.56368 -34.10878 -33.14867 -32.01340 -30.21222 -27.93567 -27.19511 -25.70323 -24.14137 -22.22918 -22.03506 -21.68945 -20.59752 -19.02956 -18.75942 -17.82646 -17.36688 -17.28307 -17.00289 -16.33406 -15.92269 -15.50992 -15.31279 -15.03503 -14.40757 -14.31306 -14.21928 -14.03025 -13.83499 -13.79397 -13.48443 -13.24387 -13.01411 -12.76857 -12.64387 -12.39821 -12.12130 -11.85006 -11.60444 -11.26874 -11.18433 -10.90519 -10.76495 -10.20774 -9.59187 -9.08520 -8.19957 -5.44877 0.26291 0.98536 1.24964 1.35951 1.47410 1.82508 2.06387 2.25134 2.40598 2.99862 3.29840 3.52465 3.60670 3.67883 3.81545 3.84639 3.98911 4.34197 4.37450 4.45637 4.47641 4.55603 4.63654 4.71609 4.72701 4.77734 4.84185 4.85716 5.02491 5.06160 5.09343 5.16392 5.30931 5.37491 5.43794 5.67530 5.95384 6.08369 6.40181 6.75174 7.07686 7.52957 8.09330 9.00409 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.004676 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.207162 B = 5986.979130 C = 7079.967011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.009 4.009 3 C -0.191 4.191 4 C -0.263 4.263 5 C 0.585 3.415 6 O -0.581 6.581 7 N -0.717 5.717 8 C 0.139 3.861 9 C -0.099 4.099 10 H 0.110 0.890 11 C -0.108 4.108 12 C 0.122 3.878 13 N -0.631 5.631 14 C -0.239 4.239 15 H 0.057 0.943 16 C -0.045 4.045 17 N -0.958 5.958 18 Si 0.954 3.046 19 H -0.267 1.267 20 H -0.311 1.311 21 H -0.263 1.263 22 C 0.118 3.882 23 C 0.035 3.965 24 O -0.176 6.176 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.158 0.842 29 H 0.409 0.591 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.038 0.962 36 H 0.262 0.738 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.646 2.219 16.142 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.057 4.057 3 C -0.210 4.210 4 C -0.267 4.267 5 C 0.374 3.626 6 O -0.463 6.463 7 N -0.368 5.368 8 C 0.016 3.984 9 C -0.118 4.118 10 H 0.128 0.872 11 C -0.146 4.146 12 C -0.002 4.002 13 N -0.359 5.359 14 C -0.368 4.368 15 H 0.075 0.925 16 C -0.239 4.239 17 N -0.604 5.604 18 Si 0.783 3.217 19 H -0.194 1.194 20 H -0.240 1.240 21 H -0.188 1.188 22 C -0.006 4.006 23 C -0.035 4.035 24 O -0.072 6.072 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.122 0.878 28 H 0.176 0.824 29 H 0.245 0.755 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.132 0.868 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -17.779 2.705 15.949 24.037 hybrid contribution 0.144 -0.857 -0.620 1.067 sum -17.635 1.849 15.329 23.439 Atomic orbital electron populations 1.20548 0.81715 1.05409 1.05253 1.22996 0.95686 0.82743 1.04320 1.22616 0.89969 1.00485 1.07980 1.21534 0.94450 0.94331 1.16400 1.17556 0.83017 0.86754 0.75249 1.90741 1.87794 1.15358 1.52358 1.45851 1.05254 1.11039 1.74664 1.21347 0.81380 0.93163 1.02543 1.22394 0.94851 0.97851 0.96690 0.87231 1.22710 0.92274 0.97244 1.02373 1.21879 0.94780 0.94316 0.89197 1.45006 1.02105 1.68346 1.20396 1.18640 1.00369 1.19702 0.98088 0.92491 1.25709 1.01961 1.00437 0.95801 1.70007 1.44685 1.39195 1.06560 0.85804 0.80071 0.77723 0.78071 1.19354 1.24046 1.18832 1.21875 0.85921 0.97025 0.95824 1.24968 0.84964 0.95088 0.98491 1.83776 1.16609 1.35926 1.70847 0.89203 0.88229 0.87803 0.82420 0.75523 0.92875 0.89200 0.90977 0.86811 0.93794 0.94389 0.92959 0.96224 0.96319 0.74264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.40 71.24 0.74 0.05 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.19 -4.44 10.90 23.65 0.26 -4.19 16 4 C -0.26 -6.70 6.31 -18.99 -0.12 -6.82 16 5 C 0.59 17.62 7.81 86.65 0.68 18.30 16 6 O -0.58 -21.78 16.98 -4.08 -0.07 -21.85 16 7 N -0.72 -18.61 5.42 -466.40 -2.53 -21.14 16 8 C 0.14 3.71 5.00 86.38 0.43 4.14 16 9 C -0.10 -2.72 2.98 -9.61 -0.03 -2.75 16 10 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 11 C -0.11 -2.84 6.54 31.99 0.21 -2.63 16 12 C 0.12 4.42 7.23 86.85 0.63 5.05 16 13 N -0.63 -29.78 3.22 -691.25 -2.22 -32.01 16 14 C -0.24 -13.91 10.56 84.03 0.89 -13.02 16 15 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 16 C -0.04 -2.66 5.43 84.86 0.46 -2.20 16 17 N -0.96 -61.30 13.97 21.65 0.30 -61.00 16 18 Si 0.95 45.95 24.39 68.60 1.67 47.62 16 19 H -0.27 -11.91 6.83 99.48 0.68 -11.23 16 20 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 21 H -0.26 -11.78 6.87 99.48 0.68 -11.10 16 22 C 0.12 4.71 4.55 86.67 0.39 5.11 16 23 C 0.04 0.69 11.61 67.39 0.78 1.47 16 24 O -0.18 -3.52 10.52 4.47 0.05 -3.47 16 25 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.16 3.52 8.06 -2.90 -0.02 3.50 16 29 H 0.41 8.71 7.37 -92.71 -0.68 8.03 16 30 H 0.05 1.67 8.01 -2.38 -0.02 1.65 16 31 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 33 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 34 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.26 15.88 8.31 -92.71 -0.77 15.10 16 37 H 0.02 0.82 3.55 -2.38 -0.01 0.81 16 38 H 0.02 0.84 7.73 -2.38 -0.02 0.82 16 39 H 0.24 2.91 7.47 -2.91 -0.02 2.89 16 Total: -1.00 -79.42 323.66 3.03 -76.39 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.33 Total: 12.93 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: 5.50 Total: 2.52 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -4.45 Total: -114.15 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.02 Total: -25.32 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 1.67 Total: 47.62 kcal Total: -79.42 3.03 -76.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028495701.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.533 kcal (2) G-P(sol) polarization free energy of solvation -79.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds