Wall clock time and date at job start Tue Mar 31 2020 01:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35125 * 126.44429 * 2 1 4 4 O 1.33936 * 108.76771 * 179.83236 * 3 2 1 5 5 C 1.34913 * 109.38233 * 0.44242 * 4 3 2 6 6 C 1.46655 * 125.99083 * 179.73458 * 5 4 3 7 7 O 1.21692 * 120.00562 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99326 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99671 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47217 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.64269 * 305.70679 * 10 9 8 12 12 C 1.55155 * 110.72394 * 182.55989 * 10 9 8 13 13 C 1.54904 * 101.58472 * 206.13912 * 12 10 9 14 14 N 1.47419 * 104.83354 * 37.00807 * 13 12 10 15 15 C 1.36939 * 125.65070 * 155.90324 * 14 13 12 16 16 H 1.08000 * 120.00458 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99669 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00018 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47178 * 89.99472 * 19 17 15 21 21 H 1.48495 * 109.47231 * 210.00179 * 19 17 15 22 22 H 1.48506 * 109.47006 * 329.99689 * 19 17 15 23 23 C 1.47320 * 108.73639 * 335.71555 * 14 13 12 24 24 C 1.36550 * 108.02307 * 359.72797 * 5 4 3 25 25 H 1.08999 * 109.47015 * 269.69103 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.68255 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.68973 * 1 2 3 28 28 H 1.08003 * 125.61772 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00458 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47309 * 300.00469 * 9 8 6 31 31 H 1.09007 * 109.46938 * 60.00474 * 9 8 6 32 32 H 1.09003 * 110.99950 * 324.21256 * 12 10 9 33 33 H 1.09003 * 111.00037 * 88.02090 * 12 10 9 34 34 H 1.09004 * 110.36709 * 155.84657 * 13 12 10 35 35 H 1.09003 * 110.36618 * 278.05979 * 13 12 10 36 36 H 0.97006 * 119.99579 * 180.02562 * 18 17 15 37 37 H 1.08998 * 110.06712 * 241.86726 * 23 14 13 38 38 H 1.09001 * 109.84940 * 120.61150 * 23 14 13 39 39 H 1.07997 * 126.64096 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5859 0.6803 0.0037 5 6 3.6261 -0.6682 -0.0037 6 6 4.8378 -1.4943 -0.0081 7 8 4.7470 -2.7078 -0.0143 8 7 6.0520 -0.9093 -0.0054 9 6 7.2626 -1.7345 -0.0104 10 6 8.4965 -0.8299 -0.0065 11 1 8.4539 -0.1183 -0.8311 12 6 9.7964 -1.6740 -0.0765 13 6 10.8179 -0.7292 0.6042 14 7 10.0622 -0.0730 1.6865 15 6 10.6024 0.4700 2.8216 16 1 9.9608 0.9308 3.5581 17 6 11.9748 0.4282 3.0257 18 7 12.7567 -0.1338 2.1284 19 14 12.7120 1.1696 4.5737 20 1 12.7725 0.1353 5.6376 21 1 14.0825 1.6615 4.2828 22 1 11.8666 2.3015 5.0314 23 6 8.6296 -0.0938 1.3434 24 6 2.3407 -1.1292 -0.0061 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3632 0.8928 -0.5089 27 1 -0.3634 -0.8872 -0.5186 28 1 1.9771 2.1145 0.0004 29 1 6.1244 0.0579 -0.0001 30 1 7.2737 -2.3687 0.8761 31 1 7.2731 -2.3588 -0.9039 32 1 9.6896 -2.6028 0.4840 33 1 10.0770 -1.8742 -1.1106 34 1 11.6492 -1.3020 1.0152 35 1 11.1834 0.0106 -0.1081 36 1 13.7158 -0.1633 2.2713 37 1 8.2528 0.9246 1.2492 38 1 8.0724 -0.6277 2.1132 39 1 2.0266 -2.1624 -0.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028751484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:55 Heat of formation + Delta-G solvation = -2.812041 kcal Electronic energy + Delta-G solvation = -20975.534839 eV Core-core repulsion = 17692.368647 eV Total energy + Delta-G solvation = -3283.166192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.90317 -39.52893 -37.63091 -34.90643 -34.32595 -32.54282 -30.89921 -29.76546 -28.38447 -27.46876 -25.65969 -24.11127 -22.61988 -21.33686 -20.49231 -19.87577 -19.49243 -18.05947 -16.87806 -16.59790 -16.40732 -16.00345 -15.32768 -14.74748 -14.44889 -14.07299 -13.77758 -13.60768 -13.48759 -13.24264 -12.86664 -12.84488 -12.51367 -12.01935 -11.78666 -11.71809 -11.51294 -10.95916 -10.80352 -10.57350 -10.27301 -10.09753 -10.00721 -9.95106 -9.79655 -9.53018 -9.14985 -8.75424 -8.65310 -6.83894 -5.65705 -3.07333 0.89951 2.07025 2.52211 3.10385 3.19250 3.40046 3.44854 3.46835 4.45862 4.49334 4.50821 4.68819 5.01630 5.12385 5.23540 5.28757 5.36874 5.39933 5.50992 5.51882 5.66053 5.67311 5.72003 5.86499 6.03072 6.08045 6.14705 6.31285 6.34318 6.54462 6.57442 6.62680 6.71851 6.89543 7.44250 7.50916 7.62203 7.85204 8.03582 8.36093 9.21951 9.82596 10.47482 11.38343 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.003245 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.375519 B = 8627.377220 C = 9289.830553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.196 4.196 3 C -0.011 4.011 4 O -0.160 6.160 5 C -0.071 4.071 6 C 0.599 3.401 7 O -0.525 6.525 8 N -0.712 5.712 9 C 0.131 3.869 10 C -0.115 4.115 11 H 0.077 0.923 12 C -0.135 4.135 13 C 0.152 3.848 14 N -0.605 5.605 15 C -0.222 4.222 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.140 3.860 24 C -0.122 4.122 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.209 0.791 29 H 0.407 0.593 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.108 0.892 35 H 0.012 0.988 36 H 0.252 0.748 37 H 0.019 0.981 38 H 0.025 0.975 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.751 0.955 -6.990 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.198 4.198 3 C -0.080 4.080 4 O -0.055 6.055 5 C -0.123 4.123 6 C 0.384 3.616 7 O -0.403 6.403 8 N -0.362 5.362 9 C 0.008 3.992 10 C -0.135 4.135 11 H 0.095 0.905 12 C -0.174 4.174 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.208 1.208 23 C 0.014 3.986 24 C -0.143 4.143 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.225 0.775 29 H 0.242 0.758 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.125 0.875 35 H 0.030 0.970 36 H 0.063 0.937 37 H 0.037 0.963 38 H 0.043 0.957 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -20.288 0.300 -6.887 21.427 hybrid contribution 0.213 0.971 0.767 1.256 sum -20.075 1.271 -6.120 21.025 Atomic orbital electron populations 1.20177 0.88643 1.02796 1.02348 1.20491 0.97711 0.92447 1.09119 1.24204 0.79963 1.00051 1.03823 1.84083 1.29316 1.21720 1.70424 1.22159 0.96286 0.80542 1.13296 1.16561 0.81347 0.86363 0.77281 1.90878 1.86052 1.12253 1.51142 1.46018 1.05480 1.11240 1.73442 1.21573 0.81831 0.93315 1.02491 1.22457 0.93954 0.97798 0.99251 0.90473 1.23008 0.95081 0.99078 1.00222 1.21930 0.93898 0.92995 0.88469 1.44578 0.99918 1.67965 1.20631 1.19084 0.90670 1.29898 0.95432 0.90538 1.24791 0.95942 1.01359 0.98644 1.69796 1.03527 1.49371 1.34459 0.86066 0.78445 0.78621 0.82332 1.21571 1.21643 1.20753 1.21396 0.88164 0.96367 0.92680 1.21833 0.90556 1.00551 1.01323 0.91254 0.91479 0.91304 0.77482 0.75823 0.90774 0.91187 0.91757 0.92040 0.87483 0.97007 0.93721 0.96290 0.95694 0.82320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.39 36.01 0.37 -0.13 16 2 C -0.20 -1.79 6.14 -104.93 -0.64 -2.43 16 3 C -0.01 -0.09 12.00 29.62 0.36 0.27 16 4 O -0.16 -1.82 10.40 4.98 0.05 -1.77 16 5 C -0.07 -0.91 7.13 -36.80 -0.26 -1.17 16 6 C 0.60 8.87 7.79 -12.86 -0.10 8.77 16 7 O -0.52 -9.23 16.86 5.20 0.09 -9.14 16 8 N -0.71 -9.84 5.43 -61.62 -0.33 -10.17 16 9 C 0.13 1.95 5.00 -4.04 -0.02 1.93 16 10 C -0.12 -1.92 2.98 -88.79 -0.26 -2.19 16 11 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 12 C -0.13 -2.49 6.54 -24.59 -0.16 -2.65 16 13 C 0.15 3.66 5.89 -2.53 -0.01 3.65 16 14 N -0.60 -15.53 3.40 -169.84 -0.58 -16.11 16 15 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -26.98 10.09 55.49 0.56 -26.42 16 19 Si 0.91 22.17 29.55 -169.99 -5.02 17.14 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.87 6.66 -2.90 -0.02 2.85 16 24 C -0.12 -1.39 10.57 -39.39 -0.42 -1.81 16 25 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.21 0.92 8.06 -52.48 -0.42 0.50 16 29 H 0.41 5.05 8.16 -40.82 -0.33 4.72 16 30 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.11 2.91 5.87 -51.93 -0.30 2.61 16 35 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.03 0.52 7.73 -51.93 -0.40 0.12 16 39 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -32.60 329.10 -7.35 -39.95 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.65 Total: 1.30 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -1.42 Total: 0.26 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.35 Total: -52.70 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.14 Total: -10.91 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.60 -7.35 -39.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028751484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.137 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds