Wall clock time and date at job start Tue Mar 31 2020 01:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35125 * 126.44429 * 2 1 4 4 O 1.33936 * 108.76771 * 179.83236 * 3 2 1 5 5 C 1.34913 * 109.38233 * 0.44242 * 4 3 2 6 6 C 1.46655 * 125.99083 * 179.73458 * 5 4 3 7 7 O 1.21692 * 120.00562 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99326 * 359.97438 * 6 5 4 9 9 C 1.46505 * 119.99671 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47217 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.64269 * 305.70679 * 10 9 8 12 12 C 1.55155 * 110.72394 * 182.55989 * 10 9 8 13 13 C 1.54904 * 101.58472 * 206.13912 * 12 10 9 14 14 N 1.47419 * 104.83354 * 37.00807 * 13 12 10 15 15 C 1.36939 * 125.65070 * 155.90324 * 14 13 12 16 16 H 1.08000 * 120.00458 * 179.97438 * 15 14 13 17 17 C 1.38812 * 119.99669 * 359.97438 * 15 14 13 18 18 N 1.31618 * 120.00155 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00018 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47178 * 89.99472 * 19 17 15 21 21 H 1.48495 * 109.47231 * 210.00179 * 19 17 15 22 22 H 1.48506 * 109.47006 * 329.99689 * 19 17 15 23 23 C 1.47320 * 108.73639 * 335.71555 * 14 13 12 24 24 C 1.36550 * 108.02307 * 359.72797 * 5 4 3 25 25 H 1.08999 * 109.47015 * 269.69103 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.68255 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.68973 * 1 2 3 28 28 H 1.08003 * 125.61772 * 0.02562 * 3 2 1 29 29 H 0.96996 * 120.00458 * 0.02562 * 8 6 5 30 30 H 1.08999 * 109.47309 * 300.00469 * 9 8 6 31 31 H 1.09007 * 109.46938 * 60.00474 * 9 8 6 32 32 H 1.09003 * 110.99950 * 324.21256 * 12 10 9 33 33 H 1.09003 * 111.00037 * 88.02090 * 12 10 9 34 34 H 1.09004 * 110.36709 * 155.84657 * 13 12 10 35 35 H 1.09003 * 110.36618 * 278.05979 * 13 12 10 36 36 H 0.97006 * 119.99579 * 180.02562 * 18 17 15 37 37 H 1.08998 * 110.06712 * 241.86726 * 23 14 13 38 38 H 1.09001 * 109.84940 * 120.61150 * 23 14 13 39 39 H 1.07997 * 126.64096 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3098 1.0870 0.0000 4 8 3.5859 0.6803 0.0037 5 6 3.6261 -0.6682 -0.0037 6 6 4.8378 -1.4943 -0.0081 7 8 4.7470 -2.7078 -0.0143 8 7 6.0520 -0.9093 -0.0054 9 6 7.2626 -1.7345 -0.0104 10 6 8.4965 -0.8299 -0.0065 11 1 8.4539 -0.1183 -0.8311 12 6 9.7964 -1.6740 -0.0765 13 6 10.8179 -0.7292 0.6042 14 7 10.0622 -0.0730 1.6865 15 6 10.6024 0.4700 2.8216 16 1 9.9608 0.9308 3.5581 17 6 11.9748 0.4282 3.0257 18 7 12.7567 -0.1338 2.1284 19 14 12.7120 1.1696 4.5737 20 1 12.7725 0.1353 5.6376 21 1 14.0825 1.6615 4.2828 22 1 11.8666 2.3015 5.0314 23 6 8.6296 -0.0938 1.3434 24 6 2.3407 -1.1292 -0.0061 25 1 -0.3633 -0.0055 1.0276 26 1 -0.3632 0.8928 -0.5089 27 1 -0.3634 -0.8872 -0.5186 28 1 1.9771 2.1145 0.0004 29 1 6.1244 0.0579 -0.0001 30 1 7.2737 -2.3687 0.8761 31 1 7.2731 -2.3588 -0.9039 32 1 9.6896 -2.6028 0.4840 33 1 10.0770 -1.8742 -1.1106 34 1 11.6492 -1.3020 1.0152 35 1 11.1834 0.0106 -0.1081 36 1 13.7158 -0.1633 2.2713 37 1 8.2528 0.9246 1.2492 38 1 8.0724 -0.6277 2.1132 39 1 2.0266 -2.1624 -0.0122 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028751484.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:54 Heat of formation + Delta-G solvation = -24.471373 kcal Electronic energy + Delta-G solvation = -20976.474058 eV Core-core repulsion = 17692.368647 eV Total energy + Delta-G solvation = -3284.105411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -43.70031 -40.71885 -39.23655 -36.22507 -35.16161 -34.33070 -32.02708 -31.32838 -29.90034 -28.21561 -27.30863 -25.63908 -23.80836 -22.22552 -22.05393 -21.35498 -20.68476 -19.07153 -18.75307 -17.51813 -17.31885 -17.26748 -16.75967 -16.51478 -15.78601 -15.60840 -15.07757 -14.42273 -14.32542 -14.28506 -14.08278 -13.93757 -13.56235 -13.51142 -13.39679 -13.16683 -12.83537 -12.67480 -12.55174 -12.02684 -11.99276 -11.85192 -11.63013 -11.49090 -11.26931 -10.74816 -10.74274 -10.28920 -9.54935 -8.89174 -7.78256 -5.22514 0.00174 1.33584 1.45932 1.47934 1.56480 1.65278 2.05795 2.18691 2.48978 3.31127 3.56972 3.67190 3.79775 3.82578 3.95210 4.03308 4.06934 4.34943 4.42641 4.62927 4.64358 4.68899 4.76144 4.88948 4.89229 4.93316 5.01384 5.04506 5.09248 5.12176 5.23156 5.36747 5.46599 5.51541 5.65825 5.82075 5.83367 6.31378 6.38099 6.93897 7.10709 7.77990 8.41498 9.23672 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.028237 B = 0.003245 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.375519 B = 8627.377220 C = 9289.830553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.207 4.207 3 C 0.005 3.995 4 O -0.169 6.169 5 C -0.104 4.104 6 C 0.599 3.401 7 O -0.562 6.562 8 N -0.706 5.706 9 C 0.142 3.858 10 C -0.095 4.095 11 H 0.096 0.904 12 C -0.121 4.121 13 C 0.152 3.848 14 N -0.629 5.629 15 C -0.240 4.240 16 H 0.079 0.921 17 C -0.068 4.068 18 N -0.949 5.949 19 Si 0.980 3.020 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.136 3.864 24 C -0.123 4.123 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.069 0.931 28 H 0.251 0.749 29 H 0.414 0.586 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.072 0.928 35 H -0.009 1.009 36 H 0.247 0.753 37 H 0.027 0.973 38 H 0.021 0.979 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.954 2.160 -7.359 24.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.208 4.208 3 C -0.064 4.064 4 O -0.065 6.065 5 C -0.155 4.155 6 C 0.387 3.613 7 O -0.443 6.443 8 N -0.356 5.356 9 C 0.019 3.981 10 C -0.114 4.114 11 H 0.115 0.885 12 C -0.160 4.160 13 C 0.027 3.973 14 N -0.355 5.355 15 C -0.369 4.369 16 H 0.096 0.904 17 C -0.260 4.260 18 N -0.599 5.599 19 Si 0.808 3.192 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.195 1.195 23 C 0.011 3.989 24 C -0.144 4.144 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.088 0.912 28 H 0.267 0.733 29 H 0.251 0.749 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.009 0.991 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.039 0.961 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.522 1.523 -7.262 23.713 hybrid contribution 0.793 0.659 0.882 1.357 sum -21.729 2.181 -6.380 22.751 Atomic orbital electron populations 1.20260 0.86424 1.03965 1.03134 1.20865 0.99250 0.91619 1.09104 1.25134 0.78719 1.01770 1.00823 1.84069 1.30882 1.20825 1.70703 1.21784 0.95754 0.81332 1.16669 1.16767 0.81965 0.86169 0.76401 1.90846 1.86677 1.13783 1.52988 1.45903 1.05011 1.11512 1.73190 1.21352 0.81427 0.92829 1.02537 1.22293 0.93879 0.97605 0.97611 0.88529 1.22850 0.94072 0.97804 1.01285 1.21738 0.94628 0.92977 0.87993 1.44904 1.02201 1.67996 1.20406 1.19451 0.91186 1.29818 0.96474 0.90356 1.25639 0.96436 1.02252 1.01710 1.70053 1.03294 1.50460 1.36070 0.85050 0.77340 0.78042 0.78728 1.21292 1.21885 1.19510 1.21561 0.85447 0.97246 0.94623 1.22100 0.90732 1.01458 1.00099 0.90574 0.89376 0.91169 0.73270 0.74926 0.92195 0.89794 0.91705 0.88982 0.91023 0.99129 0.94296 0.95504 0.96125 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.39 71.24 0.74 0.00 16 2 C -0.21 -3.26 6.14 -20.06 -0.12 -3.39 16 3 C 0.00 0.07 12.00 67.10 0.81 0.87 16 4 O -0.17 -3.52 10.40 -5.08 -0.05 -3.57 16 5 C -0.10 -2.58 7.13 24.07 0.17 -2.41 16 6 C 0.60 17.53 7.79 86.44 0.67 18.21 16 7 O -0.56 -19.86 16.86 -4.32 -0.07 -19.93 16 8 N -0.71 -18.73 5.43 -467.09 -2.53 -21.27 16 9 C 0.14 4.03 5.00 86.38 0.43 4.46 16 10 C -0.09 -3.01 2.98 -9.61 -0.03 -3.04 16 11 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 12 C -0.12 -4.34 6.54 31.98 0.21 -4.13 16 13 C 0.15 7.45 5.89 86.85 0.51 7.96 16 14 N -0.63 -32.66 3.40 -691.24 -2.35 -35.01 16 15 C -0.24 -13.67 10.28 84.03 0.86 -12.80 16 16 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 17 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 18 N -0.95 -56.99 10.09 21.65 0.22 -56.78 16 19 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.14 5.51 6.66 86.67 0.58 6.09 16 24 C -0.12 -2.69 10.57 22.39 0.24 -2.45 16 25 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.25 1.03 8.06 -2.91 -0.02 1.01 16 29 H 0.41 9.68 8.16 -92.71 -0.76 8.92 16 30 H 0.06 1.90 8.01 -2.39 -0.02 1.88 16 31 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.06 2.32 8.05 -2.39 -0.02 2.30 16 33 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.07 4.05 5.87 -2.38 -0.01 4.03 16 35 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 37 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.02 0.86 7.73 -2.39 -0.02 0.84 16 39 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -72.49 329.10 3.07 -69.42 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 0.30 Total: 13.12 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 5.53 Total: 5.94 kcal Atomic # 7 Polarization: -108.39 SS G_CDS: -4.67 Total: -113.06 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.13 Total: -23.51 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -72.49 3.07 -69.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028751484.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.950 kcal (2) G-P(sol) polarization free energy of solvation -72.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds