Wall clock time and date at job start Tue Mar 31 2020 00:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34173 * 125.44344 * 2 1 4 4 C 1.47026 * 105.95866 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19098 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99394 * 179.97438 * 5 4 3 7 7 N 1.34770 * 120.00266 * 359.97438 * 5 4 3 8 8 C 1.46498 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47291 * 180.02562 * 8 7 5 10 10 C 1.53943 * 113.74184 * 273.74182 * 9 8 7 11 11 N 1.47813 * 86.03838 * 222.08345 * 10 9 8 12 12 C 1.36940 * 134.46003 * 204.64137 * 11 10 9 13 13 H 1.07998 * 120.00092 * 173.34533 * 12 11 10 14 14 C 1.38809 * 119.99680 * 353.35267 * 12 11 10 15 15 N 1.31619 * 120.00231 * 5.06028 * 14 12 11 16 16 Si 1.86804 * 119.99759 * 185.06065 * 14 12 11 17 17 H 1.48494 * 109.47046 * 94.98887 * 16 14 12 18 18 H 1.48504 * 109.47150 * 214.98875 * 16 14 12 19 19 H 1.48496 * 109.47303 * 334.98462 * 16 14 12 20 20 C 1.47578 * 91.04887 * 24.55153 * 11 10 9 21 21 C 1.36413 * 105.61239 * 0.02562 * 4 3 2 22 22 C 1.50696 * 125.80142 * 180.02562 * 21 4 3 23 23 O 1.33660 * 108.39664 * 359.73478 * 21 4 3 24 24 H 1.09003 * 109.47046 * 89.99163 * 1 2 3 25 25 H 1.09003 * 109.47078 * 329.99699 * 1 2 3 26 26 H 1.08998 * 109.47815 * 209.99761 * 1 2 3 27 27 H 1.08003 * 127.02262 * 0.04312 * 3 2 1 28 28 H 0.97007 * 119.99856 * 0.02562 * 7 5 4 29 29 H 1.08997 * 109.47375 * 300.00972 * 8 7 5 30 30 H 1.09001 * 109.46897 * 60.00110 * 8 7 5 31 31 H 1.08990 * 112.94641 * 45.33601 * 9 8 7 32 32 H 1.09002 * 113.77426 * 336.35264 * 10 9 8 33 33 H 1.09002 * 113.77080 * 107.75103 * 10 9 8 34 34 H 0.97005 * 119.99922 * 179.97438 * 15 14 12 35 35 H 1.09005 * 113.77143 * 221.15163 * 20 11 10 36 36 H 1.09000 * 113.77261 * 89.75676 * 20 11 10 37 37 H 1.09006 * 109.47064 * 89.99735 * 22 21 4 38 38 H 1.09006 * 109.47520 * 209.99760 * 22 21 4 39 39 H 1.09000 * 109.47413 * 330.00115 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6711 0.6027 -0.0006 5 6 4.9025 1.4123 -0.0003 6 8 5.9891 0.8663 -0.0005 7 7 4.8244 2.7578 0.0001 8 6 6.0486 3.5626 0.0009 9 6 5.6823 5.0480 0.0019 10 6 5.4450 5.6288 -1.4039 11 7 6.2062 6.8056 -0.9344 12 6 6.2487 8.1263 -1.2939 13 1 6.8292 8.8262 -0.7113 14 6 5.5453 8.5654 -2.4072 15 7 4.7590 7.7350 -3.0586 16 14 5.7149 10.3351 -2.9808 17 1 6.7494 10.4141 -4.0432 18 1 4.4144 10.8075 -3.5201 19 1 6.1156 11.1906 -1.8351 20 6 6.9001 5.9867 0.0783 21 6 3.5789 -0.7583 -0.0015 22 6 4.7388 -1.7204 -0.0019 23 8 2.2851 -1.0935 0.0044 24 1 -0.3633 0.0002 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3634 -0.8899 0.5138 27 1 1.9596 2.1229 0.0006 28 1 3.9576 3.1933 0.0005 29 1 6.6341 3.3325 0.8910 30 1 6.6348 3.3331 -0.8889 31 1 4.8954 5.2912 0.7157 32 1 5.9419 5.0726 -2.1988 33 1 4.3978 5.8397 -1.6211 34 1 4.2672 8.0420 -3.8363 35 1 7.0127 6.4826 1.0425 36 1 7.8256 5.5358 -0.2801 37 1 5.0183 -1.9530 1.0257 38 1 4.4505 -2.6371 -0.5164 39 1 5.5868 -1.2670 -0.5152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031541942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:03 Heat of formation + Delta-G solvation = 22.095014 kcal Electronic energy + Delta-G solvation = -20937.562006 eV Core-core repulsion = 17655.475865 eV Total energy + Delta-G solvation = -3282.086141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.70657 -39.33371 -37.90016 -34.42301 -33.27433 -32.98417 -32.14118 -29.80309 -28.72536 -26.19466 -25.04824 -24.76584 -23.10844 -21.94207 -20.82685 -19.87343 -18.72788 -17.21532 -16.70578 -16.61779 -15.80931 -15.66123 -15.14067 -14.67236 -14.46495 -13.89142 -13.71896 -13.56170 -13.48245 -13.12547 -12.99400 -12.87703 -12.75937 -12.55334 -12.32629 -11.70761 -11.41311 -11.32579 -10.98930 -10.73040 -10.55474 -10.03386 -9.85334 -9.76526 -9.70999 -9.42013 -8.81920 -8.78344 -8.47010 -6.86565 -5.78631 -3.09692 1.30568 1.90257 2.57014 3.38887 3.41760 3.44447 3.46016 3.47227 4.30370 4.45544 4.67535 4.78876 5.01013 5.12605 5.18127 5.19195 5.30574 5.33566 5.36232 5.37438 5.46892 5.59418 5.68408 5.79863 5.85800 6.03642 6.08113 6.21051 6.27387 6.37805 6.58569 6.67042 6.77718 6.93906 7.21878 7.34672 7.55498 7.73032 7.97335 8.39499 9.04178 9.70412 10.60587 11.39210 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.003345 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.679281 B = 8368.094194 C = 9157.065580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.017 4.017 3 C -0.184 4.184 4 C -0.238 4.238 5 C 0.586 3.414 6 O -0.550 6.550 7 N -0.713 5.713 8 C 0.131 3.869 9 C -0.154 4.154 10 C 0.172 3.828 11 N -0.613 5.613 12 C -0.224 4.224 13 H 0.080 0.920 14 C -0.007 4.007 15 N -0.920 5.920 16 Si 0.910 3.090 17 H -0.289 1.289 18 H -0.291 1.291 19 H -0.280 1.280 20 C 0.128 3.872 21 C 0.071 3.929 22 C -0.080 4.080 23 O -0.177 6.177 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.075 0.925 27 H 0.158 0.842 28 H 0.402 0.598 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.029 0.971 33 H 0.067 0.933 34 H 0.253 0.747 35 H 0.045 0.955 36 H 0.036 0.964 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.308 -17.649 7.521 20.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.065 4.065 3 C -0.203 4.203 4 C -0.243 4.243 5 C 0.374 3.626 6 O -0.430 6.430 7 N -0.363 5.363 8 C 0.007 3.993 9 C -0.174 4.174 10 C 0.046 3.954 11 N -0.339 5.339 12 C -0.352 4.352 13 H 0.098 0.902 14 C -0.204 4.204 15 N -0.567 5.567 16 Si 0.740 3.260 17 H -0.216 1.216 18 H -0.217 1.217 19 H -0.205 1.205 20 C 0.002 3.998 21 C 0.019 3.981 22 C -0.136 4.136 23 O -0.074 6.074 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.176 0.824 28 H 0.236 0.764 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.107 0.893 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.724 -17.985 7.328 20.552 hybrid contribution -0.309 1.466 -0.520 1.586 sum -7.033 -16.519 6.808 19.202 Atomic orbital electron populations 1.20329 0.84726 1.04133 1.03730 1.22214 0.93960 0.83698 1.06627 1.22651 0.90804 0.99663 1.07185 1.21202 0.93967 0.93309 1.15774 1.17187 0.87211 0.82032 0.76148 1.90730 1.28807 1.71991 1.51474 1.45843 1.10689 1.05473 1.74309 1.21460 0.85912 0.90058 1.01827 1.23817 1.00468 0.90919 1.02202 1.22291 0.97981 0.85173 0.89932 1.45970 1.44986 1.03567 1.39397 1.19041 1.26069 0.82176 1.07883 0.90206 1.24817 0.99844 0.98141 0.97585 1.69833 1.31150 1.34222 1.21471 0.86134 0.77096 0.84060 0.78714 1.21620 1.21710 1.20549 1.22492 0.93396 0.90324 0.93614 1.22755 0.82819 0.94092 0.98465 1.20596 0.92229 0.96541 1.04260 1.83682 1.16216 1.35671 1.71860 0.89942 0.89098 0.90583 0.82432 0.76393 0.91869 0.91293 0.89265 0.95283 0.91430 0.93658 0.93697 0.94615 0.89500 0.90608 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.40 36.00 0.37 -0.09 16 2 C -0.02 -0.18 7.28 -35.74 -0.26 -0.44 16 3 C -0.18 -2.10 10.48 -37.45 -0.39 -2.50 16 4 C -0.24 -3.25 6.31 -103.28 -0.65 -3.91 16 5 C 0.59 9.17 7.81 -12.54 -0.10 9.07 16 6 O -0.55 -9.84 14.84 5.27 0.08 -9.77 16 7 N -0.71 -10.49 5.55 -61.40 -0.34 -10.83 16 8 C 0.13 2.10 5.51 -4.05 -0.02 2.08 16 9 C -0.15 -2.78 3.93 -89.70 -0.35 -3.13 16 10 C 0.17 3.97 6.99 -2.84 -0.02 3.95 16 11 N -0.61 -15.78 3.70 -177.69 -0.66 -16.44 16 12 C -0.22 -6.34 10.70 -15.06 -0.16 -6.50 16 13 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 14 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 15 N -0.92 -27.31 11.51 55.49 0.64 -26.67 16 16 Si 0.91 22.18 29.56 -169.99 -5.02 17.15 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.13 2.60 8.51 -2.97 -0.03 2.58 16 21 C 0.07 0.89 7.37 -34.97 -0.26 0.64 16 22 C -0.08 -0.81 9.89 36.00 0.36 -0.45 16 23 O -0.18 -2.10 10.52 7.64 0.08 -2.02 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.16 1.49 7.74 -52.48 -0.41 1.08 16 28 H 0.40 5.22 7.64 -40.82 -0.31 4.91 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.07 1.20 7.88 -51.93 -0.41 0.79 16 31 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.03 0.71 7.92 -51.93 -0.41 0.30 16 33 H 0.07 1.70 7.37 -51.93 -0.38 1.32 16 34 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 1.28 6.48 -51.93 -0.34 0.94 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -33.72 332.10 -7.43 -41.16 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.61 Total: 1.42 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: -1.61 Total: 0.99 kcal Atomic # 7 Polarization: -53.58 SS G_CDS: -0.36 Total: -53.94 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.16 Total: -11.78 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.72 -7.43 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031541942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.251 kcal (2) G-P(sol) polarization free energy of solvation -33.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds