Wall clock time and date at job start Tue Mar 31 2020 00:19:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34173 * 125.44344 * 2 1 4 4 C 1.47026 * 105.95866 * 180.02562 * 3 2 1 5 5 C 1.47379 * 127.19098 * 180.02562 * 4 3 2 6 6 O 1.21610 * 119.99394 * 179.97438 * 5 4 3 7 7 N 1.34770 * 120.00266 * 359.97438 * 5 4 3 8 8 C 1.46498 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.52994 * 109.47291 * 180.02562 * 8 7 5 10 10 C 1.53943 * 113.74184 * 273.74182 * 9 8 7 11 11 N 1.47813 * 86.03838 * 222.08345 * 10 9 8 12 12 C 1.36940 * 134.46003 * 204.64137 * 11 10 9 13 13 H 1.07998 * 120.00092 * 173.34533 * 12 11 10 14 14 C 1.38809 * 119.99680 * 353.35267 * 12 11 10 15 15 N 1.31619 * 120.00231 * 5.06028 * 14 12 11 16 16 Si 1.86804 * 119.99759 * 185.06065 * 14 12 11 17 17 H 1.48494 * 109.47046 * 94.98887 * 16 14 12 18 18 H 1.48504 * 109.47150 * 214.98875 * 16 14 12 19 19 H 1.48496 * 109.47303 * 334.98462 * 16 14 12 20 20 C 1.47578 * 91.04887 * 24.55153 * 11 10 9 21 21 C 1.36413 * 105.61239 * 0.02562 * 4 3 2 22 22 C 1.50696 * 125.80142 * 180.02562 * 21 4 3 23 23 O 1.33660 * 108.39664 * 359.73478 * 21 4 3 24 24 H 1.09003 * 109.47046 * 89.99163 * 1 2 3 25 25 H 1.09003 * 109.47078 * 329.99699 * 1 2 3 26 26 H 1.08998 * 109.47815 * 209.99761 * 1 2 3 27 27 H 1.08003 * 127.02262 * 0.04312 * 3 2 1 28 28 H 0.97007 * 119.99856 * 0.02562 * 7 5 4 29 29 H 1.08997 * 109.47375 * 300.00972 * 8 7 5 30 30 H 1.09001 * 109.46897 * 60.00110 * 8 7 5 31 31 H 1.08990 * 112.94641 * 45.33601 * 9 8 7 32 32 H 1.09002 * 113.77426 * 336.35264 * 10 9 8 33 33 H 1.09002 * 113.77080 * 107.75103 * 10 9 8 34 34 H 0.97005 * 119.99922 * 179.97438 * 15 14 12 35 35 H 1.09005 * 113.77143 * 221.15163 * 20 11 10 36 36 H 1.09000 * 113.77261 * 89.75676 * 20 11 10 37 37 H 1.09006 * 109.47064 * 89.99735 * 22 21 4 38 38 H 1.09006 * 109.47520 * 209.99760 * 22 21 4 39 39 H 1.09000 * 109.47413 * 330.00115 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6711 0.6027 -0.0006 5 6 4.9025 1.4123 -0.0003 6 8 5.9891 0.8663 -0.0005 7 7 4.8244 2.7578 0.0001 8 6 6.0486 3.5626 0.0009 9 6 5.6823 5.0480 0.0019 10 6 5.4450 5.6288 -1.4039 11 7 6.2062 6.8056 -0.9344 12 6 6.2487 8.1263 -1.2939 13 1 6.8292 8.8262 -0.7113 14 6 5.5453 8.5654 -2.4072 15 7 4.7590 7.7350 -3.0586 16 14 5.7149 10.3351 -2.9808 17 1 6.7494 10.4141 -4.0432 18 1 4.4144 10.8075 -3.5201 19 1 6.1156 11.1906 -1.8351 20 6 6.9001 5.9867 0.0783 21 6 3.5789 -0.7583 -0.0015 22 6 4.7388 -1.7204 -0.0019 23 8 2.2851 -1.0935 0.0044 24 1 -0.3633 0.0002 -1.0277 25 1 -0.3633 0.8900 0.5139 26 1 -0.3634 -0.8899 0.5138 27 1 1.9596 2.1229 0.0006 28 1 3.9576 3.1933 0.0005 29 1 6.6341 3.3325 0.8910 30 1 6.6348 3.3331 -0.8889 31 1 4.8954 5.2912 0.7157 32 1 5.9419 5.0726 -2.1988 33 1 4.3978 5.8397 -1.6211 34 1 4.2672 8.0420 -3.8363 35 1 7.0127 6.4826 1.0425 36 1 7.8256 5.5358 -0.2801 37 1 5.0183 -1.9530 1.0257 38 1 4.4505 -2.6371 -0.5164 39 1 5.5868 -1.2670 -0.5152 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031541942.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:03 Heat of formation + Delta-G solvation = -0.151685 kcal Electronic energy + Delta-G solvation = -20938.526695 eV Core-core repulsion = 17655.475865 eV Total energy + Delta-G solvation = -3283.050830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.59628 -40.65206 -39.54259 -35.79528 -34.33890 -33.95752 -33.83395 -30.86614 -30.11523 -27.80933 -26.56423 -25.98586 -24.37285 -23.40980 -21.87995 -21.23954 -20.12105 -18.73621 -18.18835 -17.51268 -17.09017 -16.96379 -16.69168 -16.17059 -15.74800 -15.52940 -14.96419 -14.64064 -14.41034 -14.21250 -14.06205 -13.96760 -13.78927 -13.45577 -13.31356 -13.21439 -13.11004 -12.88542 -12.54529 -12.46941 -12.22281 -11.83094 -11.59534 -11.30414 -10.99259 -10.87165 -10.81616 -10.05748 -9.35077 -8.91320 -7.92729 -5.25004 0.31652 1.03417 1.45203 1.47385 1.56068 1.72707 2.24394 2.32675 2.47308 3.27928 3.39564 3.51194 3.71388 3.81278 3.85948 4.08546 4.28699 4.35095 4.46449 4.56285 4.60355 4.62393 4.71110 4.75130 4.77633 4.85095 4.86986 4.96642 5.05321 5.09847 5.24216 5.24989 5.40182 5.46129 5.54009 5.63658 5.92814 6.05534 6.55617 6.91410 7.19978 7.59984 8.56511 9.25054 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025272 B = 0.003345 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.679281 B = 8368.094194 C = 9157.065580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.014 4.014 3 C -0.198 4.198 4 C -0.266 4.266 5 C 0.585 3.415 6 O -0.578 6.578 7 N -0.709 5.709 8 C 0.143 3.857 9 C -0.115 4.115 10 C 0.169 3.831 11 N -0.645 5.645 12 C -0.238 4.238 13 H 0.085 0.915 14 C -0.066 4.066 15 N -0.952 5.952 16 Si 0.977 3.023 17 H -0.290 1.290 18 H -0.293 1.293 19 H -0.266 1.266 20 C 0.127 3.873 21 C 0.068 3.932 22 C -0.079 4.079 23 O -0.180 6.180 24 H 0.094 0.906 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.173 0.827 28 H 0.410 0.590 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.041 0.959 34 H 0.249 0.751 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.057 -18.035 8.693 21.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.062 4.062 3 C -0.217 4.217 4 C -0.271 4.271 5 C 0.374 3.626 6 O -0.460 6.460 7 N -0.359 5.359 8 C 0.019 3.981 9 C -0.135 4.135 10 C 0.043 3.957 11 N -0.372 5.372 12 C -0.366 4.366 13 H 0.102 0.898 14 C -0.260 4.260 15 N -0.601 5.601 16 Si 0.805 3.195 17 H -0.217 1.217 18 H -0.219 1.219 19 H -0.190 1.190 20 C 0.002 3.998 21 C 0.015 3.985 22 C -0.135 4.135 23 O -0.078 6.078 24 H 0.112 0.888 25 H 0.126 0.874 26 H 0.107 0.893 27 H 0.191 0.809 28 H 0.246 0.754 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.029 0.971 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.474 -18.377 8.533 21.596 hybrid contribution -0.081 1.526 -0.861 1.754 sum -7.555 -16.851 7.672 19.998 Atomic orbital electron populations 1.20538 0.81785 1.05610 1.04902 1.22972 0.95512 0.82958 1.04781 1.22874 0.89894 1.00884 1.08065 1.21213 0.94145 0.93918 1.17775 1.17467 0.87580 0.82123 0.75424 1.90708 1.29994 1.72470 1.52874 1.45744 1.10680 1.05354 1.74139 1.21218 0.86395 0.88646 1.01839 1.23419 0.99652 0.91778 0.98662 1.22201 0.95953 0.85140 0.92380 1.46383 1.46562 1.03581 1.40654 1.19456 1.25368 0.83842 1.07927 0.89771 1.25655 0.99986 1.02288 0.98025 1.70013 1.32237 1.36040 1.21810 0.85079 0.76596 0.79514 0.78286 1.21716 1.21946 1.19007 1.22694 0.94203 0.89914 0.93039 1.23145 0.83610 0.94224 0.97563 1.20635 0.90875 0.96865 1.05092 1.83711 1.16016 1.36304 1.71722 0.88784 0.87423 0.89306 0.80925 0.75362 0.90363 0.92785 0.87724 0.97102 0.94096 0.94248 0.91818 0.93553 0.88290 0.88241 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 10.40 71.23 0.74 0.01 16 2 C -0.01 -0.27 7.28 24.76 0.18 -0.09 16 3 C -0.20 -4.30 10.48 23.65 0.25 -4.05 16 4 C -0.27 -7.14 6.31 -18.99 -0.12 -7.26 16 5 C 0.58 18.13 7.81 86.65 0.68 18.81 16 6 O -0.58 -20.75 14.84 -4.06 -0.06 -20.81 16 7 N -0.71 -20.35 5.55 -466.44 -2.59 -22.94 16 8 C 0.14 4.43 5.51 86.38 0.48 4.91 16 9 C -0.12 -4.03 3.93 -10.14 -0.04 -4.07 16 10 C 0.17 7.93 6.99 86.44 0.60 8.54 16 11 N -0.65 -33.21 3.70 -716.10 -2.65 -35.86 16 12 C -0.24 -13.44 10.70 84.03 0.90 -12.54 16 13 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 14 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 15 N -0.95 -57.74 11.51 21.65 0.25 -57.49 16 16 Si 0.98 45.85 29.56 68.60 2.03 47.88 16 17 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 18 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 C 0.13 4.96 8.51 86.49 0.74 5.70 16 21 C 0.07 1.64 7.37 25.26 0.19 1.82 16 22 C -0.08 -1.52 9.89 71.23 0.70 -0.81 16 23 O -0.18 -4.01 10.52 4.41 0.05 -3.96 16 24 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.17 3.02 7.74 -2.91 -0.02 3.00 16 28 H 0.41 10.30 7.64 -92.70 -0.71 9.59 16 29 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 30 H 0.05 1.86 7.88 -2.39 -0.02 1.85 16 31 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.01 0.56 7.92 -2.39 -0.02 0.54 16 33 H 0.04 2.12 7.37 -2.39 -0.02 2.10 16 34 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 35 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 36 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 37 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.09 2.15 6.48 -2.39 -0.02 2.14 16 Total: -1.00 -73.18 332.10 3.13 -70.05 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.35 Total: 15.53 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.76 Total: 7.60 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -4.99 Total: -116.28 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.01 Total: -24.77 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -73.18 3.13 -70.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031541942.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.894 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds