Wall clock time and date at job start Tue Mar 31 2020 01:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35124 * 125.61688 * 2 1 4 4 C 1.40368 * 107.11685 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.64429 * 180.02562 * 4 3 2 6 6 C 1.36544 * 106.70678 * 359.97438 * 4 3 2 7 7 C 1.46656 * 125.98722 * 179.97438 * 6 4 3 8 8 O 1.21690 * 119.99825 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99952 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.53942 * 113.74441 * 273.74574 * 11 10 9 13 13 N 1.47815 * 86.03698 * 222.07927 * 12 11 10 14 14 C 1.36934 * 134.45917 * 204.63527 * 13 12 11 15 15 H 1.07993 * 120.00114 * 179.87030 * 14 13 12 16 16 C 1.38820 * 119.99790 * 359.87827 * 14 13 12 17 17 N 1.31617 * 119.99935 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99825 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47209 * 89.99628 * 18 16 14 20 20 H 1.48494 * 109.46976 * 209.99500 * 18 16 14 21 21 H 1.48503 * 109.47083 * 329.99936 * 18 16 14 22 22 C 1.47582 * 91.05168 * 24.54860 * 13 12 11 23 23 O 1.33931 * 125.61514 * 180.30802 * 2 1 3 24 24 H 1.08999 * 109.47144 * 90.00276 * 1 2 3 25 25 H 1.09005 * 109.47229 * 210.00238 * 1 2 3 26 26 H 1.09000 * 109.46976 * 330.00259 * 1 2 3 27 27 H 1.08001 * 126.44289 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46831 * 269.97097 * 5 4 3 29 29 H 1.08997 * 109.47724 * 29.96803 * 5 4 3 30 30 H 1.09000 * 109.47013 * 149.97763 * 5 4 3 31 31 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 33 33 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 34 34 H 1.09009 * 112.94141 * 45.33574 * 11 10 9 35 35 H 1.08999 * 113.77064 * 336.34490 * 12 11 10 36 36 H 1.09000 * 113.77520 * 107.74331 * 12 11 10 37 37 H 0.96998 * 119.99498 * 180.02562 * 17 16 14 38 38 H 1.08996 * 113.77054 * 221.15221 * 22 13 12 39 39 H 1.08996 * 113.77110 * 89.74868 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5824 -0.7117 -0.0004 7 6 4.7415 -1.6102 -0.0013 8 8 5.8680 -1.1500 -0.0020 9 7 4.5590 -2.9455 -0.0015 10 6 5.7168 -3.8431 -0.0030 11 6 5.2362 -5.2956 -0.0035 12 6 4.9553 -5.8560 1.4025 13 7 5.6224 -7.0885 0.9327 14 6 5.5623 -8.4084 1.2923 15 1 6.1688 -9.1371 0.7752 16 6 4.7217 -8.8097 2.3216 17 7 3.9829 -7.9214 2.9521 18 14 4.6392 -10.6103 2.8118 19 1 5.6502 -10.8836 3.8647 20 1 3.2841 -10.9193 3.3347 21 1 4.9178 -11.4595 1.6258 22 6 6.3773 -6.3261 -0.0807 23 8 2.2870 -1.0888 -0.0059 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9613 2.1260 0.0004 28 1 5.1599 1.7222 -1.0279 29 1 4.6513 2.4522 0.5137 30 1 5.6685 0.9914 0.5134 31 1 3.6610 -3.3123 -0.0013 32 1 6.3178 -3.6593 -0.8936 33 1 6.3197 -3.6598 0.8864 34 1 4.4322 -5.4768 -0.7169 35 1 5.4945 -5.3401 2.1969 36 1 3.8951 -5.9847 1.6205 37 1 3.3958 -8.2018 3.6715 38 1 6.4503 -6.8293 -1.0448 39 1 7.3351 -5.9484 0.2770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031598863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:29 Heat of formation + Delta-G solvation = 23.791465 kcal Electronic energy + Delta-G solvation = -21002.379965 eV Core-core repulsion = 17720.367388 eV Total energy + Delta-G solvation = -3282.012577 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.82963 -39.42184 -37.94139 -34.80195 -33.91537 -32.64520 -32.14330 -29.20231 -28.10201 -27.31447 -25.48541 -24.77667 -22.28621 -21.66651 -21.16993 -19.88085 -19.04929 -17.85939 -16.72207 -16.63715 -15.91822 -15.41444 -15.14975 -14.68366 -14.40192 -13.92152 -13.71428 -13.46084 -13.35778 -13.17331 -13.07989 -12.84773 -12.74429 -12.50364 -12.34843 -11.75482 -11.40946 -11.33031 -11.00228 -10.71511 -10.59998 -10.15065 -9.81754 -9.77318 -9.75651 -9.43876 -8.96497 -8.79718 -8.47043 -6.87886 -5.76720 -3.08925 0.98740 2.17749 2.54543 3.21696 3.32171 3.39378 3.44068 3.46020 4.39953 4.45394 4.65712 4.77012 5.05269 5.13759 5.16036 5.23866 5.30262 5.35572 5.38900 5.47900 5.62336 5.63200 5.71444 5.82803 5.95769 5.99335 6.06444 6.22493 6.31576 6.36341 6.52277 6.62461 6.72166 6.81170 7.22128 7.35249 7.55044 7.60511 7.98089 8.18788 9.04742 9.71002 10.60024 11.40500 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.003421 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.610765 B = 8182.819951 C = 9008.694619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.020 3.980 3 C -0.225 4.225 4 C -0.089 4.089 5 C -0.093 4.093 6 C -0.083 4.083 7 C 0.600 3.400 8 O -0.525 6.525 9 N -0.710 5.710 10 C 0.130 3.870 11 C -0.154 4.154 12 C 0.168 3.832 13 N -0.613 5.613 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.129 3.871 23 O -0.160 6.160 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.153 0.847 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.407 0.593 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.253 0.747 38 H 0.046 0.954 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.813 18.699 -7.322 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.033 4.033 3 C -0.245 4.245 4 C -0.091 4.091 5 C -0.150 4.150 6 C -0.134 4.134 7 C 0.386 3.614 8 O -0.404 6.404 9 N -0.360 5.360 10 C 0.006 3.994 11 C -0.174 4.174 12 C 0.043 3.957 13 N -0.339 5.339 14 C -0.351 4.351 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.003 3.997 23 O -0.056 6.056 24 H 0.104 0.896 25 H 0.100 0.900 26 H 0.110 0.890 27 H 0.171 0.829 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.241 0.759 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.194 18.374 -7.135 20.383 hybrid contribution -0.490 -0.985 0.458 1.192 sum -5.685 17.389 -6.677 19.475 Atomic orbital electron populations 1.20414 0.84623 1.04569 1.03900 1.22759 0.94268 0.84136 1.02092 1.21441 0.91902 0.99675 1.11434 1.20594 0.96306 0.92229 1.00013 1.20411 0.93994 0.97830 1.02762 1.21931 0.81933 0.94196 1.15370 1.16532 0.85913 0.81702 0.77276 1.90826 1.22051 1.76040 1.51529 1.45990 1.11450 1.05168 1.73348 1.21540 0.87246 0.88554 1.02068 1.23821 1.00442 0.90808 1.02334 1.22362 0.99152 0.84355 0.89857 1.45978 1.46921 1.02284 1.38708 1.19038 1.20452 0.81610 1.13989 0.90232 1.24785 0.99406 0.97883 0.98414 1.69815 1.29381 1.32099 1.25613 0.86118 0.77004 0.84262 0.78372 1.21618 1.21630 1.20612 1.22482 0.93441 0.90224 0.93588 1.84025 1.15921 1.34692 1.70957 0.89637 0.89951 0.89046 0.82884 0.90938 0.91648 0.89389 0.75851 0.91561 0.91013 0.89141 0.95435 0.90945 0.93664 0.93610 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.41 36.01 0.37 -0.12 16 2 C 0.02 0.21 7.31 -35.41 -0.26 -0.05 16 3 C -0.23 -2.35 10.73 -39.89 -0.43 -2.78 16 4 C -0.09 -1.12 6.20 -104.43 -0.65 -1.77 16 5 C -0.09 -1.04 9.82 36.00 0.35 -0.69 16 6 C -0.08 -1.18 7.13 -36.80 -0.26 -1.44 16 7 C 0.60 9.46 7.79 -12.86 -0.10 9.36 16 8 O -0.53 -9.34 14.74 5.20 0.08 -9.26 16 9 N -0.71 -10.63 5.55 -61.63 -0.34 -10.97 16 10 C 0.13 2.05 5.51 -4.05 -0.02 2.03 16 11 C -0.15 -2.79 3.93 -89.70 -0.35 -3.14 16 12 C 0.17 3.91 7.08 -2.84 -0.02 3.89 16 13 N -0.61 -15.80 3.70 -177.70 -0.66 -16.46 16 14 C -0.22 -6.33 10.70 -15.06 -0.16 -6.49 16 15 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.92 -27.45 11.39 55.49 0.63 -26.82 16 18 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C 0.13 2.61 8.51 -2.96 -0.03 2.59 16 23 O -0.16 -2.10 10.40 4.98 0.05 -2.04 16 24 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.14 6.45 -51.93 -0.33 0.80 16 31 H 0.41 5.63 8.23 -40.82 -0.34 5.29 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.22 7.88 -51.93 -0.41 0.81 16 34 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 35 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 36 H 0.07 1.85 7.17 -51.93 -0.37 1.48 16 37 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -33.22 332.33 -7.54 -40.75 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.63 Total: 1.52 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.65 Total: 1.06 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.37 Total: -54.25 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.13 Total: -11.30 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.22 -7.54 -40.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031598863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.545 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds