Wall clock time and date at job start Tue Mar 31 2020 01:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35124 * 125.61688 * 2 1 4 4 C 1.40368 * 107.11685 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.64429 * 180.02562 * 4 3 2 6 6 C 1.36544 * 106.70678 * 359.97438 * 4 3 2 7 7 C 1.46656 * 125.98722 * 179.97438 * 6 4 3 8 8 O 1.21690 * 119.99825 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99952 * 180.02562 * 7 6 4 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47551 * 180.02562 * 10 9 7 12 12 C 1.53942 * 113.74441 * 273.74574 * 11 10 9 13 13 N 1.47815 * 86.03698 * 222.07927 * 12 11 10 14 14 C 1.36934 * 134.45917 * 204.63527 * 13 12 11 15 15 H 1.07993 * 120.00114 * 179.87030 * 14 13 12 16 16 C 1.38820 * 119.99790 * 359.87827 * 14 13 12 17 17 N 1.31617 * 119.99935 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99825 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47209 * 89.99628 * 18 16 14 20 20 H 1.48494 * 109.46976 * 209.99500 * 18 16 14 21 21 H 1.48503 * 109.47083 * 329.99936 * 18 16 14 22 22 C 1.47582 * 91.05168 * 24.54860 * 13 12 11 23 23 O 1.33931 * 125.61514 * 180.30802 * 2 1 3 24 24 H 1.08999 * 109.47144 * 90.00276 * 1 2 3 25 25 H 1.09005 * 109.47229 * 210.00238 * 1 2 3 26 26 H 1.09000 * 109.46976 * 330.00259 * 1 2 3 27 27 H 1.08001 * 126.44289 * 0.02562 * 3 2 1 28 28 H 1.09002 * 109.46831 * 269.97097 * 5 4 3 29 29 H 1.08997 * 109.47724 * 29.96803 * 5 4 3 30 30 H 1.09000 * 109.47013 * 149.97763 * 5 4 3 31 31 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47024 * 300.00478 * 10 9 7 33 33 H 1.09004 * 109.46875 * 60.00324 * 10 9 7 34 34 H 1.09009 * 112.94141 * 45.33574 * 11 10 9 35 35 H 1.08999 * 113.77064 * 336.34490 * 12 11 10 36 36 H 1.09000 * 113.77520 * 107.74331 * 12 11 10 37 37 H 0.96998 * 119.99498 * 180.02562 * 17 16 14 38 38 H 1.08996 * 113.77054 * 221.15221 * 22 13 12 39 39 H 1.08996 * 113.77110 * 89.74868 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 4.8617 1.5143 -0.0003 6 6 3.5824 -0.7117 -0.0004 7 6 4.7415 -1.6102 -0.0013 8 8 5.8680 -1.1500 -0.0020 9 7 4.5590 -2.9455 -0.0015 10 6 5.7168 -3.8431 -0.0030 11 6 5.2362 -5.2956 -0.0035 12 6 4.9553 -5.8560 1.4025 13 7 5.6224 -7.0885 0.9327 14 6 5.5623 -8.4084 1.2923 15 1 6.1688 -9.1371 0.7752 16 6 4.7217 -8.8097 2.3216 17 7 3.9829 -7.9214 2.9521 18 14 4.6392 -10.6103 2.8118 19 1 5.6502 -10.8836 3.8647 20 1 3.2841 -10.9193 3.3347 21 1 4.9178 -11.4595 1.6258 22 6 6.3773 -6.3261 -0.0807 23 8 2.2870 -1.0888 -0.0059 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 1.9613 2.1260 0.0004 28 1 5.1599 1.7222 -1.0279 29 1 4.6513 2.4522 0.5137 30 1 5.6685 0.9914 0.5134 31 1 3.6610 -3.3123 -0.0013 32 1 6.3178 -3.6593 -0.8936 33 1 6.3197 -3.6598 0.8864 34 1 4.4322 -5.4768 -0.7169 35 1 5.4945 -5.3401 2.1969 36 1 3.8951 -5.9847 1.6205 37 1 3.3958 -8.2018 3.6715 38 1 6.4503 -6.8293 -1.0448 39 1 7.3351 -5.9484 0.2770 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031598863.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:28 Heat of formation + Delta-G solvation = 1.724461 kcal Electronic energy + Delta-G solvation = -21003.336862 eV Core-core repulsion = 17720.367388 eV Total energy + Delta-G solvation = -3282.969474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.73259 -40.72271 -39.59184 -36.04525 -34.98549 -34.18489 -33.34172 -30.80910 -28.89230 -28.64576 -26.98161 -26.53641 -23.95384 -22.65757 -22.22605 -21.18241 -20.36114 -19.05357 -18.70696 -17.59854 -17.23210 -16.97483 -16.43568 -16.11772 -15.73962 -15.50874 -14.88376 -14.70168 -14.42034 -14.17060 -13.97848 -13.96223 -13.67076 -13.59345 -13.30698 -13.23381 -13.12040 -12.89062 -12.58539 -12.50785 -12.27381 -11.85111 -11.61909 -11.35456 -11.12802 -10.87344 -10.63940 -10.22226 -9.40027 -8.93291 -7.91508 -5.25072 -0.00364 1.33495 1.44986 1.47162 1.55809 1.62671 2.07632 2.19262 2.46950 3.29065 3.37362 3.59448 3.71964 3.79744 3.86287 4.04439 4.32548 4.46635 4.50345 4.56310 4.59263 4.71979 4.73401 4.76936 4.77773 4.83501 4.84753 4.99025 5.06835 5.17131 5.22553 5.25266 5.32046 5.51890 5.54195 5.62182 5.88884 5.92648 6.43094 6.90962 6.99470 7.59841 8.55425 9.25533 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.025047 B = 0.003421 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.610765 B = 8182.819951 C = 9008.694619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.025 3.975 3 C -0.230 4.230 4 C -0.089 4.089 5 C -0.092 4.092 6 C -0.122 4.122 7 C 0.599 3.401 8 O -0.553 6.553 9 N -0.708 5.708 10 C 0.142 3.858 11 C -0.117 4.117 12 C 0.164 3.836 13 N -0.645 5.645 14 C -0.237 4.237 15 H 0.085 0.915 16 C -0.068 4.068 17 N -0.955 5.955 18 Si 0.980 3.020 19 H -0.288 1.288 20 H -0.293 1.293 21 H -0.266 1.266 22 C 0.129 3.871 23 O -0.175 6.175 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.185 0.815 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.412 0.588 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.102 0.898 35 H 0.012 0.988 36 H 0.042 0.958 37 H 0.248 0.752 38 H 0.064 0.936 39 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.657 19.768 -8.477 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.028 4.028 3 C -0.249 4.249 4 C -0.092 4.092 5 C -0.149 4.149 6 C -0.173 4.173 7 C 0.387 3.613 8 O -0.434 6.434 9 N -0.358 5.358 10 C 0.018 3.982 11 C -0.137 4.137 12 C 0.039 3.961 13 N -0.372 5.372 14 C -0.365 4.365 15 H 0.103 0.897 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.808 3.192 19 H -0.215 1.215 20 H -0.220 1.220 21 H -0.191 1.191 22 C 0.003 3.997 23 O -0.072 6.072 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.135 0.865 27 H 0.203 0.797 28 H 0.098 0.902 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.247 0.753 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.030 0.970 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.025 19.451 -8.323 21.998 hybrid contribution -0.272 -1.222 0.794 1.483 sum -6.297 18.229 -7.529 20.703 Atomic orbital electron populations 1.20668 0.81554 1.05860 1.05389 1.23696 0.95927 0.83523 0.99626 1.21808 0.90611 1.01230 1.11244 1.21013 0.97924 0.91893 0.98351 1.20435 0.92787 0.98395 1.03261 1.21689 0.82132 0.94534 1.18979 1.16727 0.86256 0.81778 0.76560 1.90799 1.23227 1.76486 1.52931 1.45908 1.11382 1.05106 1.73404 1.21312 0.87471 0.87098 1.02338 1.23418 0.99758 0.91788 0.98697 1.22271 0.96978 0.84435 0.92416 1.46398 1.48457 1.02253 1.40069 1.19467 1.19972 0.83274 1.13814 0.89737 1.25650 0.99528 1.02126 0.98827 1.70009 1.30278 1.33947 1.26123 0.85057 0.76507 0.79461 0.78180 1.21511 1.21950 1.19107 1.22687 0.94058 0.89903 0.93006 1.84008 1.15694 1.36014 1.71494 0.87865 0.89915 0.86469 0.79742 0.90168 0.89085 0.91645 0.75272 0.89814 0.92207 0.87989 0.96974 0.93922 0.94290 0.91770 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.41 71.24 0.74 -0.01 16 2 C 0.02 0.46 7.31 24.97 0.18 0.65 16 3 C -0.23 -4.23 10.73 22.07 0.24 -4.00 16 4 C -0.09 -2.16 6.20 -19.74 -0.12 -2.28 16 5 C -0.09 -1.96 9.82 71.23 0.70 -1.26 16 6 C -0.12 -3.48 7.13 24.07 0.17 -3.31 16 7 C 0.60 19.13 7.79 86.44 0.67 19.80 16 8 O -0.55 -19.98 14.74 -4.32 -0.06 -20.04 16 9 N -0.71 -21.25 5.55 -467.12 -2.59 -23.85 16 10 C 0.14 4.41 5.51 86.38 0.48 4.89 16 11 C -0.12 -4.17 3.93 -10.14 -0.04 -4.21 16 12 C 0.16 7.85 7.08 86.44 0.61 8.46 16 13 N -0.65 -33.48 3.70 -716.12 -2.65 -36.13 16 14 C -0.24 -13.49 10.70 84.04 0.90 -12.59 16 15 H 0.08 4.58 7.83 -2.91 -0.02 4.55 16 16 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 17 N -0.95 -58.36 11.39 21.65 0.25 -58.11 16 18 Si 0.98 46.15 29.55 68.60 2.03 48.18 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 C 0.13 5.05 8.51 86.49 0.74 5.79 16 23 O -0.18 -4.49 10.40 -5.08 -0.05 -4.55 16 24 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 26 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 28 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.71 6.45 -2.39 -0.02 1.69 16 31 H 0.41 11.47 8.23 -92.71 -0.76 10.71 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.06 2.04 7.88 -2.38 -0.02 2.02 16 34 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 35 H 0.01 0.62 7.92 -2.39 -0.02 0.60 16 36 H 0.04 2.27 7.17 -2.39 -0.02 2.25 16 37 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 Total: -1.00 -73.24 332.33 2.94 -70.30 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.30 Total: 15.76 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: 5.73 Total: 8.44 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -5.00 Total: -118.09 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.12 Total: -24.59 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -73.24 2.94 -70.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031598863.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.020 kcal (2) G-P(sol) polarization free energy of solvation -73.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds