Wall clock time and date at job start Tue Mar 31 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44070 * 2 1 4 4 C 1.36545 * 106.70917 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98783 * 180.02562 * 4 3 2 6 6 O 1.21694 * 120.00205 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00176 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99852 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46747 * 180.02562 * 8 7 5 10 10 C 1.53954 * 113.74013 * 273.74120 * 9 8 7 11 11 N 1.47817 * 86.03578 * 222.08373 * 10 9 8 12 12 C 1.36938 * 134.45390 * 204.64433 * 11 10 9 13 13 H 1.07994 * 119.99697 * 179.86658 * 12 11 10 14 14 C 1.38805 * 120.00298 * 359.87020 * 12 11 10 15 15 N 1.31628 * 119.99857 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00390 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47300 * 89.99661 * 16 14 12 18 18 H 1.48493 * 109.47478 * 209.99929 * 16 14 12 19 19 H 1.48501 * 109.46825 * 329.99962 * 16 14 12 20 20 C 1.47580 * 91.05096 * 24.54779 * 11 10 9 21 21 O 1.34911 * 108.02206 * 0.02562 * 4 3 2 22 22 C 1.33931 * 109.38652 * 359.97438 * 21 4 3 23 23 C 1.50700 * 125.61431 * 179.97438 * 22 21 4 24 24 H 1.08997 * 109.46979 * 90.02911 * 1 2 3 25 25 H 1.09004 * 109.46936 * 210.02679 * 1 2 3 26 26 H 1.08994 * 109.47307 * 330.02305 * 1 2 3 27 27 H 1.08003 * 126.64463 * 0.26137 * 3 2 1 28 28 H 0.97000 * 119.99616 * 0.02562 * 7 5 4 29 29 H 1.09001 * 109.47523 * 299.99926 * 8 7 5 30 30 H 1.08997 * 109.47037 * 60.00707 * 8 7 5 31 31 H 1.09001 * 112.94834 * 45.33157 * 9 8 7 32 32 H 1.08993 * 113.76790 * 336.35100 * 10 9 8 33 33 H 1.09000 * 113.76711 * 107.75013 * 10 9 8 34 34 H 0.96999 * 119.99475 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77041 * 221.14800 * 20 11 10 36 36 H 1.09007 * 113.76506 * 89.74985 * 20 11 10 37 37 H 1.08998 * 109.47131 * 0.03035 * 23 22 21 38 38 H 1.09005 * 109.46477 * 120.02904 * 23 22 21 39 39 H 1.09000 * 109.47245 * 240.02580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4942 -0.0003 6 8 4.7470 2.7077 0.0011 7 7 6.0521 0.9093 -0.0004 8 6 7.2625 1.7346 -0.0007 9 6 8.4964 0.8299 -0.0014 10 6 8.9425 0.3888 1.4045 11 7 10.3208 0.6444 0.9355 12 6 11.5578 0.1802 1.2954 13 1 12.4382 0.5331 0.7790 14 6 11.6802 -0.7439 2.3239 15 7 10.6072 -1.1737 2.9536 16 14 13.3677 -1.3765 2.8153 17 1 13.9375 -0.4995 3.8695 18 1 13.2447 -2.7615 3.3367 19 1 14.2626 -1.3714 1.6302 20 6 9.8283 1.5981 -0.0773 21 8 3.5858 -0.6803 -0.0015 22 6 2.3097 -1.0870 -0.0010 23 6 1.8456 -2.5208 -0.0022 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8901 0.5134 27 1 2.0265 2.1625 0.0040 28 1 6.1245 -0.0580 -0.0011 29 1 7.2733 2.3637 -0.8907 30 1 7.2735 2.3637 0.8893 31 1 8.4217 0.0097 -0.7155 32 1 8.6173 1.0601 2.1993 33 1 8.7383 -0.6597 1.6214 34 1 10.6929 -1.8192 3.6725 35 1 10.3301 1.5135 -1.0412 36 1 9.7639 2.6255 0.2814 37 1 2.7114 -3.1829 -0.0031 38 1 1.2451 -2.7089 0.8879 39 1 1.2445 -2.7073 -0.8921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031610004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:13 Heat of formation + Delta-G solvation = 22.997854 kcal Electronic energy + Delta-G solvation = -20832.290164 eV Core-core repulsion = 17550.243173 eV Total energy + Delta-G solvation = -3282.046991 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.85423 -39.43680 -37.93780 -34.84580 -34.26863 -32.28335 -32.08219 -29.26696 -28.76610 -26.86736 -25.38117 -24.77940 -22.60998 -21.66991 -21.22635 -19.87283 -18.95675 -17.74996 -16.72236 -16.65772 -15.94176 -15.66740 -15.17852 -14.70723 -14.41139 -13.88268 -13.83551 -13.52348 -13.34894 -13.17378 -13.16249 -12.92815 -12.84441 -12.53563 -12.35887 -11.76491 -11.42359 -11.33471 -11.00676 -10.72866 -10.61904 -10.27461 -9.84846 -9.84060 -9.77446 -9.44524 -8.96447 -8.79942 -8.48232 -6.88086 -5.76860 -3.09154 0.97907 2.12422 2.52397 3.21157 3.29040 3.39209 3.43899 3.45852 4.43409 4.45186 4.59041 4.68969 4.96833 5.10488 5.12803 5.20897 5.29634 5.33892 5.35569 5.39027 5.52587 5.61108 5.64670 5.75161 5.82221 5.85628 6.00939 6.21682 6.28848 6.33293 6.49128 6.61501 6.71024 6.79434 7.21794 7.34858 7.54494 7.57913 7.97895 8.15576 9.04547 9.70794 10.59712 11.40301 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.003235 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.773833 B = 8653.463468 C = 9445.948938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.196 4.196 3 C -0.119 4.119 4 C -0.072 4.072 5 C 0.599 3.401 6 O -0.527 6.527 7 N -0.709 5.709 8 C 0.129 3.871 9 C -0.154 4.154 10 C 0.168 3.832 11 N -0.613 5.613 12 C -0.223 4.223 13 H 0.080 0.920 14 C -0.009 4.009 15 N -0.922 5.922 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.129 3.871 21 O -0.159 6.159 22 C 0.015 3.985 23 C -0.077 4.077 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.159 0.841 28 H 0.407 0.593 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.305 -0.907 -7.357 21.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.198 4.198 3 C -0.140 4.140 4 C -0.124 4.124 5 C 0.384 3.616 6 O -0.406 6.406 7 N -0.358 5.358 8 C 0.005 3.995 9 C -0.174 4.174 10 C 0.043 3.957 11 N -0.339 5.339 12 C -0.350 4.350 13 H 0.098 0.902 14 C -0.205 4.205 15 N -0.569 5.569 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.003 3.997 21 O -0.055 6.055 22 C -0.037 4.037 23 C -0.134 4.134 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.176 0.824 28 H 0.242 0.758 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.107 0.893 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.807 -0.424 -7.167 21.068 hybrid contribution 0.899 -0.599 0.478 1.181 sum -18.908 -1.023 -6.689 20.082 Atomic orbital electron populations 1.20160 0.88694 1.02722 1.02114 1.20187 0.97447 0.91822 1.10299 1.21789 0.90556 1.00387 1.01259 1.22094 0.96331 0.80222 1.13763 1.16563 0.81356 0.86327 0.77305 1.90866 1.86067 1.12248 1.51451 1.45993 1.05395 1.11269 1.73178 1.21558 0.82221 0.93576 1.02126 1.23827 0.92379 0.98847 1.02358 1.22365 0.83240 1.00274 0.89844 1.45981 1.02635 1.46507 1.38783 1.19032 0.83109 1.18876 1.14025 0.90233 1.24789 0.97423 0.99896 0.98434 1.69820 1.26723 1.34685 1.25665 0.86113 0.83219 0.78024 0.78371 1.21620 1.21635 1.20621 1.22484 0.90314 0.93337 0.93598 1.84034 1.28772 1.21868 1.70776 1.22584 0.80677 0.97175 1.03307 1.20392 1.02078 0.87164 1.03720 0.91409 0.91555 0.91356 0.82380 0.75785 0.91515 0.90968 0.89115 0.95425 0.90935 0.93670 0.93595 0.94573 0.90054 0.89311 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.17 36.01 0.37 -0.19 16 2 C -0.20 -2.04 6.14 -104.93 -0.64 -2.69 16 3 C -0.12 -1.49 10.57 -39.39 -0.42 -1.91 16 4 C -0.07 -1.01 7.13 -36.80 -0.26 -1.28 16 5 C 0.60 9.49 7.79 -12.86 -0.10 9.39 16 6 O -0.53 -9.72 16.86 5.19 0.09 -9.63 16 7 N -0.71 -10.59 5.55 -61.63 -0.34 -10.94 16 8 C 0.13 2.05 5.51 -4.04 -0.02 2.02 16 9 C -0.15 -2.79 3.93 -89.69 -0.35 -3.14 16 10 C 0.17 3.91 7.08 -2.83 -0.02 3.89 16 11 N -0.61 -15.80 3.70 -177.67 -0.66 -16.46 16 12 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 13 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 15 N -0.92 -27.43 11.39 55.49 0.63 -26.80 16 16 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 18 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.13 2.61 8.51 -2.97 -0.03 2.59 16 21 O -0.16 -2.06 10.40 5.00 0.05 -2.00 16 22 C 0.01 0.16 7.31 -35.42 -0.26 -0.10 16 23 C -0.08 -0.49 9.92 36.01 0.36 -0.13 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.36 7.88 -51.93 -0.41 -0.05 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16 28 H 0.41 5.58 8.23 -40.82 -0.34 5.24 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 1.23 7.88 -51.93 -0.41 0.82 16 31 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.03 0.67 7.92 -51.93 -0.41 0.26 16 33 H 0.07 1.85 7.17 -51.93 -0.37 1.48 16 34 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.04 0.71 8.10 -51.93 -0.42 0.28 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 335.55 15.07 5.06 5.06 Total: -1.00 -33.54 335.55 -7.54 -41.08 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.71 Total: 0.85 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -1.64 Total: 1.62 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.37 Total: -54.20 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.14 Total: -11.64 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.54 -7.54 -41.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031610004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.075 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds