Wall clock time and date at job start Tue Mar 31 2020 01:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44070 * 2 1 4 4 C 1.36545 * 106.70917 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98783 * 180.02562 * 4 3 2 6 6 O 1.21694 * 120.00205 * 0.02562 * 5 4 3 7 7 N 1.34780 * 120.00176 * 179.97438 * 5 4 3 8 8 C 1.46497 * 119.99852 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46747 * 180.02562 * 8 7 5 10 10 C 1.53954 * 113.74013 * 273.74120 * 9 8 7 11 11 N 1.47817 * 86.03578 * 222.08373 * 10 9 8 12 12 C 1.36938 * 134.45390 * 204.64433 * 11 10 9 13 13 H 1.07994 * 119.99697 * 179.86658 * 12 11 10 14 14 C 1.38805 * 120.00298 * 359.87020 * 12 11 10 15 15 N 1.31628 * 119.99857 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00390 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47300 * 89.99661 * 16 14 12 18 18 H 1.48493 * 109.47478 * 209.99929 * 16 14 12 19 19 H 1.48501 * 109.46825 * 329.99962 * 16 14 12 20 20 C 1.47580 * 91.05096 * 24.54779 * 11 10 9 21 21 O 1.34911 * 108.02206 * 0.02562 * 4 3 2 22 22 C 1.33931 * 109.38652 * 359.97438 * 21 4 3 23 23 C 1.50700 * 125.61431 * 179.97438 * 22 21 4 24 24 H 1.08997 * 109.46979 * 90.02911 * 1 2 3 25 25 H 1.09004 * 109.46936 * 210.02679 * 1 2 3 26 26 H 1.08994 * 109.47307 * 330.02305 * 1 2 3 27 27 H 1.08003 * 126.64463 * 0.26137 * 3 2 1 28 28 H 0.97000 * 119.99616 * 0.02562 * 7 5 4 29 29 H 1.09001 * 109.47523 * 299.99926 * 8 7 5 30 30 H 1.08997 * 109.47037 * 60.00707 * 8 7 5 31 31 H 1.09001 * 112.94834 * 45.33157 * 9 8 7 32 32 H 1.08993 * 113.76790 * 336.35100 * 10 9 8 33 33 H 1.09000 * 113.76711 * 107.75013 * 10 9 8 34 34 H 0.96999 * 119.99475 * 180.02562 * 15 14 12 35 35 H 1.08999 * 113.77041 * 221.14800 * 20 11 10 36 36 H 1.09007 * 113.76506 * 89.74985 * 20 11 10 37 37 H 1.08998 * 109.47131 * 0.03035 * 23 22 21 38 38 H 1.09005 * 109.46477 * 120.02904 * 23 22 21 39 39 H 1.09000 * 109.47245 * 240.02580 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6682 -0.0006 5 6 4.8378 1.4942 -0.0003 6 8 4.7470 2.7077 0.0011 7 7 6.0521 0.9093 -0.0004 8 6 7.2625 1.7346 -0.0007 9 6 8.4964 0.8299 -0.0014 10 6 8.9425 0.3888 1.4045 11 7 10.3208 0.6444 0.9355 12 6 11.5578 0.1802 1.2954 13 1 12.4382 0.5331 0.7790 14 6 11.6802 -0.7439 2.3239 15 7 10.6072 -1.1737 2.9536 16 14 13.3677 -1.3765 2.8153 17 1 13.9375 -0.4995 3.8695 18 1 13.2447 -2.7615 3.3367 19 1 14.2626 -1.3714 1.6302 20 6 9.8283 1.5981 -0.0773 21 8 3.5858 -0.6803 -0.0015 22 6 2.3097 -1.0870 -0.0010 23 6 1.8456 -2.5208 -0.0022 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8901 0.5134 27 1 2.0265 2.1625 0.0040 28 1 6.1245 -0.0580 -0.0011 29 1 7.2733 2.3637 -0.8907 30 1 7.2735 2.3637 0.8893 31 1 8.4217 0.0097 -0.7155 32 1 8.6173 1.0601 2.1993 33 1 8.7383 -0.6597 1.6214 34 1 10.6929 -1.8192 3.6725 35 1 10.3301 1.5135 -1.0412 36 1 9.7639 2.6255 0.2814 37 1 2.7114 -3.1829 -0.0031 38 1 1.2451 -2.7089 0.8879 39 1 1.2445 -2.7073 -0.8921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031610004.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:11 Heat of formation + Delta-G solvation = 0.649555 kcal Electronic energy + Delta-G solvation = -20833.259259 eV Core-core repulsion = 17550.243173 eV Total energy + Delta-G solvation = -3283.016086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.76019 -40.75889 -39.59970 -36.00794 -35.31182 -34.18772 -33.00658 -30.77871 -29.58488 -28.23191 -26.71205 -26.49363 -24.06446 -22.98416 -22.22559 -21.18330 -20.28662 -18.93117 -18.66750 -17.61495 -17.26149 -16.97804 -16.63781 -16.18798 -15.78326 -15.54543 -14.89584 -14.55905 -14.51932 -14.14967 -14.10618 -13.96037 -13.62621 -13.58598 -13.31519 -13.12459 -13.06018 -12.89470 -12.54637 -12.42482 -12.27729 -11.88984 -11.65934 -11.45174 -11.22108 -10.87605 -10.74606 -10.24062 -9.35668 -8.93299 -7.91481 -5.25099 -0.02466 1.27476 1.44869 1.47029 1.55638 1.58457 2.05962 2.15503 2.46786 3.28894 3.36898 3.56980 3.72440 3.80276 3.88922 4.02838 4.31952 4.32494 4.45898 4.55549 4.70824 4.71231 4.73768 4.77019 4.83809 4.84790 4.90621 5.05739 5.06932 5.07958 5.14754 5.22820 5.26961 5.52178 5.58232 5.61895 5.86267 5.92622 6.39192 6.90943 6.94544 7.59771 8.55248 9.25433 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.026819 B = 0.003235 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.773833 B = 8653.463468 C = 9445.948938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.204 4.204 3 C -0.118 4.118 4 C -0.107 4.107 5 C 0.600 3.400 6 O -0.561 6.561 7 N -0.705 5.705 8 C 0.140 3.860 9 C -0.117 4.117 10 C 0.164 3.836 11 N -0.645 5.645 12 C -0.236 4.236 13 H 0.085 0.915 14 C -0.070 4.070 15 N -0.954 5.954 16 Si 0.980 3.020 17 H -0.288 1.288 18 H -0.293 1.293 19 H -0.267 1.267 20 C 0.129 3.871 21 O -0.172 6.172 22 C 0.017 3.983 23 C -0.078 4.078 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.413 0.587 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.013 0.987 33 H 0.043 0.957 34 H 0.248 0.752 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.471 -1.558 -8.482 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.206 4.206 3 C -0.139 4.139 4 C -0.158 4.158 5 C 0.388 3.612 6 O -0.442 6.442 7 N -0.355 5.355 8 C 0.016 3.984 9 C -0.136 4.136 10 C 0.039 3.961 11 N -0.372 5.372 12 C -0.364 4.364 13 H 0.103 0.897 14 C -0.262 4.262 15 N -0.603 5.603 16 Si 0.808 3.192 17 H -0.215 1.215 18 H -0.220 1.220 19 H -0.191 1.191 20 C 0.003 3.997 21 O -0.068 6.068 22 C -0.035 4.035 23 C -0.134 4.134 24 H 0.098 0.902 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.179 0.821 28 H 0.249 0.751 29 H 0.103 0.897 30 H 0.079 0.921 31 H 0.121 0.879 32 H 0.030 0.970 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.977 -1.065 -8.325 22.594 hybrid contribution 1.163 -0.409 0.807 1.474 sum -19.815 -1.474 -7.518 21.244 Atomic orbital electron populations 1.20269 0.86065 1.03915 1.03264 1.20600 0.99193 0.90806 1.09965 1.22081 0.90559 1.01376 0.99861 1.21769 0.95985 0.80891 1.17174 1.16739 0.81880 0.86153 0.76453 1.90832 1.86647 1.13588 1.53170 1.45902 1.05058 1.11485 1.73041 1.21344 0.81598 0.93013 1.02423 1.23424 0.92660 0.98815 0.98748 1.22276 0.83133 0.98293 0.92399 1.46403 1.02594 1.48064 1.40147 1.19455 0.84542 1.18602 1.13829 0.89748 1.25656 1.01073 1.00633 0.98871 1.70013 1.28710 1.35408 1.26168 0.85053 0.79085 0.76876 0.78170 1.21532 1.21958 1.19123 1.22690 0.90803 0.93148 0.93026 1.84017 1.30353 1.21246 1.71231 1.23506 0.79743 0.99141 1.01085 1.20653 1.02628 0.84327 1.05767 0.90186 0.89547 0.91041 0.82052 0.75086 0.89742 0.92149 0.87888 0.96964 0.93873 0.94304 0.91739 0.93243 0.89966 0.87274 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.17 71.24 0.72 -0.15 16 2 C -0.20 -3.90 6.14 -20.06 -0.12 -4.02 16 3 C -0.12 -2.90 10.57 22.39 0.24 -2.66 16 4 C -0.11 -3.01 7.13 24.07 0.17 -2.84 16 5 C 0.60 19.22 7.79 86.44 0.67 19.90 16 6 O -0.56 -20.95 16.86 -4.33 -0.07 -21.03 16 7 N -0.71 -21.02 5.55 -467.11 -2.59 -23.62 16 8 C 0.14 4.35 5.51 86.38 0.48 4.83 16 9 C -0.12 -4.14 3.93 -10.13 -0.04 -4.18 16 10 C 0.16 7.82 7.08 86.44 0.61 8.43 16 11 N -0.65 -33.42 3.70 -716.02 -2.65 -36.08 16 12 C -0.24 -13.41 10.70 84.03 0.90 -12.51 16 13 H 0.08 4.56 7.83 -2.91 -0.02 4.54 16 14 C -0.07 -4.01 5.50 84.86 0.47 -3.55 16 15 N -0.95 -58.20 11.39 21.65 0.25 -57.95 16 16 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 17 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 18 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 19 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 20 C 0.13 5.03 8.51 86.49 0.74 5.77 16 21 O -0.17 -4.37 10.40 -5.02 -0.05 -4.43 16 22 C 0.02 0.34 7.31 24.97 0.18 0.52 16 23 C -0.08 -0.76 9.92 71.24 0.71 -0.06 16 24 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.62 7.88 -2.38 -0.02 0.60 16 26 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.16 3.70 8.06 -2.91 -0.02 3.68 16 28 H 0.41 11.31 8.23 -92.71 -0.76 10.55 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.06 7.88 -2.39 -0.02 2.04 16 31 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 32 H 0.01 0.63 7.92 -2.39 -0.02 0.61 16 33 H 0.04 2.29 7.17 -2.39 -0.02 2.27 16 34 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.05 1.84 8.10 -2.38 -0.02 1.82 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 Total: -1.00 -73.65 335.55 2.92 -70.74 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.29 Total: 14.71 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.72 Total: 9.49 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -5.00 Total: -117.65 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.13 Total: -25.45 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -73.65 2.92 -70.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031610004.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.386 kcal (2) G-P(sol) polarization free energy of solvation -73.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds