Wall clock time and date at job start Tue Mar 31 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35136 * 125.61181 * 2 1 4 4 C 1.40359 * 107.11281 * 180.02562 * 3 2 1 5 5 C 1.36543 * 106.71143 * 0.02562 * 4 3 2 6 6 C 1.46657 * 125.98787 * 179.97438 * 5 4 3 7 7 O 1.21690 * 120.00171 * 353.16403 * 6 5 4 8 8 N 1.34777 * 119.99691 * 173.16715 * 6 5 4 9 9 C 1.46503 * 120.00217 * 3.95351 * 8 6 5 10 10 C 1.46500 * 119.99821 * 183.95299 * 8 6 5 11 11 H 1.09004 * 110.64119 * 358.30516 * 10 8 6 12 12 C 1.55162 * 110.71793 * 234.97603 * 10 8 6 13 13 C 1.54908 * 101.58101 * 277.13784 * 12 10 8 14 14 N 1.47427 * 104.83279 * 322.98981 * 13 12 10 15 15 C 1.36941 * 125.65121 * 204.09106 * 14 13 12 16 16 H 1.08001 * 119.99833 * 180.02562 * 15 14 13 17 17 C 1.38811 * 119.99719 * 0.04928 * 15 14 13 18 18 N 1.31615 * 120.00332 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99523 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47574 * 89.99778 * 19 17 15 21 21 H 1.48510 * 109.46512 * 209.99427 * 19 17 15 22 22 H 1.48494 * 109.47223 * 329.99003 * 19 17 15 23 23 C 1.47022 * 108.70244 * 24.12913 * 14 13 12 24 24 O 1.33926 * 125.62035 * 180.02562 * 2 1 3 25 25 H 1.09001 * 109.47177 * 89.99889 * 1 2 3 26 26 H 1.09000 * 109.46648 * 209.99451 * 1 2 3 27 27 H 1.08991 * 109.47252 * 329.99355 * 1 2 3 28 28 H 1.08003 * 126.44134 * 0.06876 * 3 2 1 29 29 H 1.08002 * 126.64340 * 179.74288 * 4 3 2 30 30 H 1.08998 * 109.46969 * 84.19387 * 9 8 6 31 31 H 1.08997 * 109.46869 * 204.19808 * 9 8 6 32 32 H 1.09005 * 109.46573 * 324.18964 * 9 8 6 33 33 H 1.08991 * 111.00860 * 35.21098 * 12 10 8 34 34 H 1.09000 * 111.00627 * 159.06594 * 12 10 8 35 35 H 1.09000 * 110.36489 * 204.15555 * 13 12 10 36 36 H 1.08996 * 110.46077 * 81.87416 * 13 12 10 37 37 H 0.96996 * 120.00529 * 180.02562 * 18 17 15 38 38 H 1.08994 * 109.88326 * 239.52502 * 23 14 13 39 39 H 1.08999 * 109.88578 * 118.35598 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6533 -0.0006 5 6 3.5824 -0.7115 -0.0015 6 6 4.7416 -1.6098 -0.0029 7 8 5.8634 -1.1554 -0.1288 8 7 4.5643 -2.9388 0.1351 9 6 3.2103 -3.4944 0.1996 10 6 5.7257 -3.8276 0.2208 11 1 6.6517 -3.2601 0.1270 12 6 5.6470 -4.9392 -0.8589 13 6 4.7207 -5.9741 -0.1729 14 7 5.0994 -5.9338 1.2514 15 6 4.9159 -6.9463 2.1550 16 1 5.2288 -6.8179 3.1807 17 6 4.3282 -8.1377 1.7525 18 7 3.9469 -8.2941 0.5025 19 14 4.0772 -9.5185 2.9853 20 1 2.7485 -9.3697 3.6316 21 1 4.1430 -10.8260 2.2841 22 1 5.1406 -9.4576 4.0199 23 6 5.7060 -4.6263 1.5411 24 8 2.2870 -1.0887 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3632 -0.8901 0.5138 27 1 -0.3633 0.8898 0.5139 28 1 1.9611 2.1261 0.0010 29 1 4.5112 1.2706 -0.0047 30 1 2.8295 -3.6416 -0.8111 31 1 3.2346 -4.4509 0.7216 32 1 2.5595 -2.8041 0.7363 33 1 5.1977 -4.5610 -1.7771 34 1 6.6313 -5.3648 -1.0540 35 1 4.8937 -6.9689 -0.5834 36 1 3.6755 -5.6902 -0.2956 37 1 3.5359 -9.1264 0.2213 38 1 6.7235 -4.7626 1.9071 39 1 5.1099 -4.0977 2.2851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032887592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:17 Heat of formation + Delta-G solvation = 6.413184 kcal Electronic energy + Delta-G solvation = -22159.020175 eV Core-core repulsion = 18876.254019 eV Total energy + Delta-G solvation = -3282.766156 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.75156 -41.14559 -39.06652 -36.14794 -34.38221 -33.89682 -32.84888 -31.14565 -29.78649 -28.30864 -27.57187 -26.16483 -23.73092 -22.53637 -22.09421 -21.55834 -20.51758 -19.00763 -18.66937 -17.87228 -17.57776 -16.72669 -16.46301 -16.14449 -15.68683 -15.61785 -14.63358 -14.53645 -14.19763 -14.04760 -13.95916 -13.90716 -13.70491 -13.64340 -13.36207 -13.15007 -12.96407 -12.79332 -12.70714 -12.45360 -12.06290 -11.99348 -11.83420 -11.44670 -11.22402 -11.02704 -10.68831 -9.88328 -9.42095 -8.88790 -7.76356 -5.20859 -0.01023 1.34872 1.48825 1.49649 1.53108 1.58615 1.98123 2.07301 2.50315 3.34260 3.39495 3.67485 3.80725 3.86088 3.94467 3.98689 4.21499 4.25143 4.51081 4.55050 4.58735 4.62806 4.65595 4.71801 4.74457 4.85861 4.91697 4.93384 4.98867 5.07070 5.16745 5.39994 5.48300 5.51519 5.63038 5.81458 5.92040 6.23863 6.31155 6.86024 7.11552 7.76728 8.40738 9.25013 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024576 B = 0.004536 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.051351 B = 6171.971749 C = 6823.637649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.015 3.985 3 C -0.227 4.227 4 C -0.115 4.115 5 C -0.110 4.110 6 C 0.596 3.404 7 O -0.561 6.561 8 N -0.586 5.586 9 C 0.077 3.923 10 C 0.135 3.865 11 H 0.109 0.891 12 C -0.139 4.139 13 C 0.150 3.850 14 N -0.619 5.619 15 C -0.240 4.240 16 H 0.078 0.922 17 C -0.058 4.058 18 N -0.944 5.944 19 Si 0.978 3.022 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.273 1.273 23 C 0.128 3.872 24 O -0.166 6.166 25 H 0.102 0.898 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.014 0.986 37 H 0.248 0.752 38 H 0.039 0.961 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.306 17.427 -2.602 19.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.037 4.037 3 C -0.245 4.245 4 C -0.136 4.136 5 C -0.161 4.161 6 C 0.386 3.614 7 O -0.443 6.443 8 N -0.316 5.316 9 C -0.065 4.065 10 C 0.032 3.968 11 H 0.127 0.873 12 C -0.178 4.178 13 C 0.025 3.975 14 N -0.345 5.345 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.251 4.251 18 N -0.594 5.594 19 Si 0.806 3.194 20 H -0.214 1.214 21 H -0.220 1.220 22 H -0.198 1.198 23 C 0.002 3.998 24 O -0.063 6.063 25 H 0.120 0.880 26 H 0.100 0.900 27 H 0.135 0.865 28 H 0.204 0.796 29 H 0.182 0.818 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.886 17.103 -2.639 18.625 hybrid contribution 0.059 -0.910 0.589 1.086 sum -6.827 16.193 -2.049 17.693 Atomic orbital electron populations 1.20659 0.81676 1.05830 1.05314 1.23853 0.96114 0.84023 0.99727 1.21920 0.90949 1.01219 1.10431 1.22201 1.00097 0.92192 0.99107 1.21727 0.82062 0.94704 1.17627 1.16984 0.86566 0.81328 0.76518 1.90794 1.23878 1.76324 1.53342 1.47754 1.08354 1.05474 1.70012 1.22197 0.81251 1.00544 1.02475 1.22044 0.88736 0.90334 0.95732 0.87289 1.23205 1.01522 0.95847 0.97236 1.21934 0.94093 0.98321 0.83114 1.44742 1.70828 1.11677 1.07282 1.19391 1.33351 0.92709 0.91398 0.90450 1.25524 1.01146 1.00126 0.98336 1.70021 1.47392 1.25848 1.16132 0.85093 0.77861 0.78457 0.77967 1.21358 1.21974 1.19809 1.21700 0.96636 0.86442 0.95001 1.84280 1.15746 1.35338 1.70965 0.88007 0.89958 0.86454 0.79587 0.81822 0.91954 0.90240 0.89711 0.90356 0.90134 0.90872 0.96782 0.94247 0.94319 0.95945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.41 71.24 0.74 -0.05 16 2 C 0.02 0.29 7.31 24.97 0.18 0.47 16 3 C -0.23 -4.20 10.77 22.07 0.24 -3.96 16 4 C -0.12 -2.87 10.63 22.39 0.24 -2.63 16 5 C -0.11 -3.31 6.77 24.07 0.16 -3.15 16 6 C 0.60 21.21 7.64 86.44 0.66 21.87 16 7 O -0.56 -22.29 16.25 -4.32 -0.07 -22.36 16 8 N -0.59 -21.09 2.82 -820.66 -2.32 -23.41 16 9 C 0.08 2.65 7.91 127.77 1.01 3.66 16 10 C 0.14 5.13 3.58 46.18 0.17 5.30 16 11 H 0.11 4.04 6.99 -2.38 -0.02 4.03 16 12 C -0.14 -5.35 6.53 31.99 0.21 -5.14 16 13 C 0.15 7.15 4.99 86.85 0.43 7.58 16 14 N -0.62 -31.29 2.97 -691.99 -2.06 -33.35 16 15 C -0.24 -13.23 10.27 84.03 0.86 -12.36 16 16 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 17 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 18 N -0.94 -54.54 10.09 21.65 0.22 -54.32 16 19 Si 0.98 44.90 29.55 68.60 2.03 46.93 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.13 5.51 6.30 86.73 0.55 6.06 16 24 O -0.17 -4.44 7.27 -5.01 -0.04 -4.47 16 25 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 29 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.08 3.26 4.76 -2.39 -0.01 3.25 16 32 H 0.08 2.66 5.35 -2.38 -0.01 2.65 16 33 H 0.08 2.76 8.14 -2.39 -0.02 2.75 16 34 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.07 4.02 5.87 -2.39 -0.01 4.00 16 36 H 0.01 0.70 5.54 -2.39 -0.01 0.69 16 37 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 Total: -1.00 -67.10 314.70 4.74 -62.36 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.06 Total: 13.73 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: 5.92 Total: 14.89 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.16 Total: -111.07 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.11 Total: -26.84 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -67.10 4.74 -62.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032887592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.774 kcal (2) G-P(sol) polarization free energy of solvation -67.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds