Wall clock time and date at job start Tue Mar 31 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35131 * 125.61756 * 2 1 4 4 C 1.40369 * 107.11235 * 180.02562 * 3 2 1 5 5 C 1.36541 * 106.70809 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98436 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00147 * 6.02195 * 6 5 4 8 8 N 1.34783 * 119.99718 * 186.02871 * 6 5 4 9 9 C 1.46499 * 120.00002 * 356.12656 * 8 6 5 10 10 C 1.46499 * 120.00007 * 176.13237 * 8 6 5 11 11 H 1.09003 * 110.88405 * 356.11439 * 10 8 6 12 12 C 1.55154 * 111.00821 * 119.99778 * 10 8 6 13 13 C 1.54314 * 102.94305 * 82.56932 * 12 10 8 14 14 N 1.47019 * 107.27272 * 22.19697 * 13 12 10 15 15 C 1.36938 * 125.65080 * 181.02319 * 14 13 12 16 16 H 1.07993 * 120.00256 * 185.06970 * 15 14 13 17 17 C 1.38814 * 119.99865 * 5.06869 * 15 14 13 18 18 N 1.31627 * 120.00001 * 4.86740 * 17 15 14 19 19 Si 1.86802 * 120.00116 * 185.14781 * 17 15 14 20 20 H 1.48503 * 109.46998 * 264.72554 * 19 17 15 21 21 H 1.48498 * 109.46919 * 24.72131 * 19 17 15 22 22 H 1.48499 * 109.47118 * 144.72338 * 19 17 15 23 23 C 1.47420 * 108.70410 * 1.28481 * 14 13 12 24 24 O 1.33934 * 125.61301 * 180.32472 * 2 1 3 25 25 H 1.09004 * 109.47166 * 89.99568 * 1 2 3 26 26 H 1.08994 * 109.47230 * 210.00234 * 1 2 3 27 27 H 1.08999 * 109.46651 * 330.00229 * 1 2 3 28 28 H 1.07993 * 126.44526 * 0.03097 * 3 2 1 29 29 H 1.08000 * 126.64638 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46884 * 275.64177 * 9 8 6 31 31 H 1.08999 * 109.47357 * 35.63888 * 9 8 6 32 32 H 1.09004 * 109.47147 * 155.64288 * 9 8 6 33 33 H 1.09007 * 110.71379 * 324.20511 * 12 10 8 34 34 H 1.09002 * 110.87487 * 201.00989 * 12 10 8 35 35 H 1.08997 * 109.88452 * 262.77595 * 13 12 10 36 36 H 1.09000 * 110.01321 * 141.68630 * 13 12 10 37 37 H 0.96999 * 119.99583 * 180.27317 * 18 17 15 38 38 H 1.08997 * 110.36695 * 94.48156 * 23 14 13 39 39 H 1.09001 * 110.36788 * 216.80862 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5822 -0.7117 -0.0004 6 6 4.7414 -1.6103 -0.0013 7 8 5.8645 -1.1547 0.1081 8 7 4.5627 -2.9406 -0.1236 9 6 3.2080 -3.4965 -0.1700 10 6 5.7231 -3.8307 -0.2098 11 1 6.6508 -3.2588 -0.2295 12 6 5.7259 -4.8553 0.9553 13 6 4.7707 -5.9566 0.4494 14 7 4.7226 -5.8532 -1.0163 15 6 3.9713 -6.6404 -1.8477 16 1 4.0667 -6.5397 -2.9187 17 6 3.0871 -7.5677 -1.3138 18 7 2.8997 -7.6249 -0.0122 19 14 2.1690 -8.7399 -2.4419 20 1 0.8295 -8.1795 -2.7537 21 1 2.9362 -8.9180 -3.7008 22 1 2.0113 -10.0538 -1.7681 23 6 5.6219 -4.7660 -1.4434 24 8 2.2869 -1.0888 -0.0062 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.9614 2.1260 0.0005 29 1 4.5114 1.2701 -0.0011 30 1 2.8373 -3.6354 0.8455 31 1 2.5519 -2.8104 -0.7057 32 1 3.2270 -4.4573 -0.6845 33 1 5.3418 -4.4013 1.8689 34 1 6.7264 -5.2568 1.1170 35 1 3.7748 -5.8031 0.8648 36 1 5.1459 -6.9380 0.7397 37 1 2.2848 -8.2756 0.3611 38 1 6.6030 -5.1646 -1.7016 39 1 5.1940 -4.2305 -2.2908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032887593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:24 Heat of formation + Delta-G solvation = 21.793224 kcal Electronic energy + Delta-G solvation = -22393.178896 eV Core-core repulsion = 19111.079669 eV Total energy + Delta-G solvation = -3282.099227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -42.66463 -39.58718 -37.43945 -34.39592 -33.19148 -32.27421 -31.80616 -29.40819 -28.02746 -27.10592 -25.88239 -24.36268 -22.49507 -21.45211 -20.38542 -20.10658 -19.08353 -17.33901 -16.91118 -16.50498 -16.17790 -15.29389 -14.73929 -14.67528 -14.11945 -13.89860 -13.37201 -13.31168 -13.15644 -13.11904 -12.77139 -12.70174 -12.05786 -11.97989 -11.86058 -11.68568 -11.35844 -10.97326 -10.89118 -10.76885 -10.34330 -10.15854 -9.98163 -9.97892 -9.75003 -9.61229 -8.74581 -8.52378 -8.14091 -6.86259 -5.77700 -3.14443 1.17185 2.35047 2.70552 3.35265 3.36314 3.42176 3.43218 3.43629 4.43952 4.55758 4.82994 4.92995 5.20063 5.28248 5.33469 5.41652 5.45109 5.50717 5.63975 5.67539 5.82038 5.84770 5.86855 6.03203 6.21345 6.24023 6.34687 6.40029 6.50747 6.53158 6.62011 6.86903 6.89669 7.17388 7.45622 7.59004 7.74607 7.77931 8.17867 8.33827 9.13813 9.73481 10.38686 11.31478 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.005489 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.876292 B = 5100.261204 C = 6111.026016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.006 3.994 3 C -0.226 4.226 4 C -0.128 4.128 5 C -0.066 4.066 6 C 0.592 3.408 7 O -0.539 6.539 8 N -0.575 5.575 9 C 0.054 3.946 10 C 0.122 3.878 11 H 0.101 0.899 12 C -0.154 4.154 13 C 0.168 3.832 14 N -0.602 5.602 15 C -0.233 4.233 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.918 5.918 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.281 1.281 22 H -0.290 1.290 23 C 0.124 3.876 24 O -0.148 6.148 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.133 0.867 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.253 0.747 38 H 0.035 0.965 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.085 14.014 1.317 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C -0.245 4.245 4 C -0.148 4.148 5 C -0.118 4.118 6 C 0.380 3.620 7 O -0.419 6.419 8 N -0.304 5.304 9 C -0.087 4.087 10 C 0.018 3.982 11 H 0.119 0.881 12 C -0.193 4.193 13 C 0.044 3.956 14 N -0.329 5.329 15 C -0.361 4.361 16 H 0.096 0.904 17 C -0.201 4.201 18 N -0.565 5.565 19 Si 0.741 3.259 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.217 1.217 23 C -0.002 4.002 24 O -0.044 6.044 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.169 0.831 29 H 0.175 0.825 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.151 0.849 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.754 13.695 1.390 14.039 hybrid contribution -0.533 -0.501 -0.471 0.870 sum -3.287 13.195 0.919 13.629 Atomic orbital electron populations 1.20390 0.84888 1.04333 1.03854 1.22930 0.94498 0.84801 1.02409 1.21516 0.92396 0.99521 1.11086 1.21864 0.98428 0.92909 1.01634 1.22148 0.82046 0.94485 1.13104 1.16778 0.85936 0.81635 0.77633 1.90811 1.22471 1.76110 1.52555 1.47661 1.08856 1.04794 1.69086 1.22565 0.80271 1.03402 1.02503 1.22364 0.87941 0.90377 0.97504 0.88063 1.23229 1.01210 0.97678 0.97223 1.21320 0.97045 0.93814 0.83459 1.44615 1.49240 1.36497 1.02527 1.19042 1.14934 1.13091 0.89039 0.90410 1.24796 0.99394 0.99896 0.96013 1.69961 1.39252 1.37831 1.09440 0.86125 0.79669 0.80546 0.79562 1.21614 1.20662 1.21666 1.21967 0.94699 0.89173 0.94392 1.84402 1.16062 1.33717 1.70194 0.89706 0.90061 0.89259 0.83056 0.82537 0.93218 0.91570 0.84864 0.91825 0.91255 0.91705 0.94943 0.93669 0.94734 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.41 36.01 0.37 -0.25 16 2 C 0.01 0.07 7.31 -35.41 -0.26 -0.18 16 3 C -0.23 -2.65 10.77 -39.89 -0.43 -3.08 16 4 C -0.13 -1.80 10.63 -39.39 -0.42 -2.22 16 5 C -0.07 -1.09 6.78 -36.80 -0.25 -1.34 16 6 C 0.59 11.07 7.64 -12.86 -0.10 10.97 16 7 O -0.54 -10.97 16.26 5.20 0.08 -10.89 16 8 N -0.57 -10.87 2.91 -172.89 -0.50 -11.37 16 9 C 0.05 1.04 8.03 59.85 0.48 1.52 16 10 C 0.12 2.31 3.66 -65.66 -0.24 2.07 16 11 H 0.10 1.86 7.03 -51.93 -0.37 1.49 16 12 C -0.15 -2.94 6.48 -24.90 -0.16 -3.10 16 13 C 0.17 3.90 4.36 -3.07 -0.01 3.89 16 14 N -0.60 -14.49 1.86 -169.94 -0.32 -14.81 16 15 C -0.23 -6.15 9.80 -15.06 -0.15 -6.29 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 17 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 18 N -0.92 -25.54 10.39 55.49 0.58 -24.97 16 19 Si 0.91 21.31 29.56 -169.99 -5.02 16.28 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.12 2.56 6.47 -2.41 -0.02 2.54 16 24 O -0.15 -2.28 7.25 4.99 0.04 -2.24 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.15 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 30 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 31 H 0.07 1.19 5.30 -51.93 -0.28 0.91 16 32 H 0.13 3.00 4.38 -51.93 -0.23 2.78 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.06 1.64 6.02 -51.93 -0.31 1.33 16 36 H 0.03 0.83 7.88 -51.93 -0.41 0.43 16 37 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 315.36 15.07 4.75 4.75 Total: -1.00 -29.93 315.36 -7.03 -36.96 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.36 Total: 1.96 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.27 Total: 4.32 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.24 Total: -51.14 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.12 Total: -13.13 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.93 -7.03 -36.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032887593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.752 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.56 seconds