Wall clock time and date at job start Tue Mar 31 2020 00:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35131 * 125.61756 * 2 1 4 4 C 1.40369 * 107.11235 * 180.02562 * 3 2 1 5 5 C 1.36541 * 106.70809 * 359.97438 * 4 3 2 6 6 C 1.46661 * 125.98436 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00147 * 6.02195 * 6 5 4 8 8 N 1.34783 * 119.99718 * 186.02871 * 6 5 4 9 9 C 1.46499 * 120.00002 * 356.12656 * 8 6 5 10 10 C 1.46499 * 120.00007 * 176.13237 * 8 6 5 11 11 H 1.09003 * 110.88405 * 356.11439 * 10 8 6 12 12 C 1.55154 * 111.00821 * 119.99778 * 10 8 6 13 13 C 1.54314 * 102.94305 * 82.56932 * 12 10 8 14 14 N 1.47019 * 107.27272 * 22.19697 * 13 12 10 15 15 C 1.36938 * 125.65080 * 181.02319 * 14 13 12 16 16 H 1.07993 * 120.00256 * 185.06970 * 15 14 13 17 17 C 1.38814 * 119.99865 * 5.06869 * 15 14 13 18 18 N 1.31627 * 120.00001 * 4.86740 * 17 15 14 19 19 Si 1.86802 * 120.00116 * 185.14781 * 17 15 14 20 20 H 1.48503 * 109.46998 * 264.72554 * 19 17 15 21 21 H 1.48498 * 109.46919 * 24.72131 * 19 17 15 22 22 H 1.48499 * 109.47118 * 144.72338 * 19 17 15 23 23 C 1.47420 * 108.70410 * 1.28481 * 14 13 12 24 24 O 1.33934 * 125.61301 * 180.32472 * 2 1 3 25 25 H 1.09004 * 109.47166 * 89.99568 * 1 2 3 26 26 H 1.08994 * 109.47230 * 210.00234 * 1 2 3 27 27 H 1.08999 * 109.46651 * 330.00229 * 1 2 3 28 28 H 1.07993 * 126.44526 * 0.03097 * 3 2 1 29 29 H 1.08000 * 126.64638 * 179.97438 * 4 3 2 30 30 H 1.09003 * 109.46884 * 275.64177 * 9 8 6 31 31 H 1.08999 * 109.47357 * 35.63888 * 9 8 6 32 32 H 1.09004 * 109.47147 * 155.64288 * 9 8 6 33 33 H 1.09007 * 110.71379 * 324.20511 * 12 10 8 34 34 H 1.09002 * 110.87487 * 201.00989 * 12 10 8 35 35 H 1.08997 * 109.88452 * 262.77595 * 13 12 10 36 36 H 1.09000 * 110.01321 * 141.68630 * 13 12 10 37 37 H 0.96999 * 119.99583 * 180.27317 * 18 17 15 38 38 H 1.08997 * 110.36695 * 94.48156 * 23 14 13 39 39 H 1.09001 * 110.36788 * 216.80862 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0985 0.0000 4 6 3.6251 0.6530 -0.0006 5 6 3.5822 -0.7117 -0.0004 6 6 4.7414 -1.6103 -0.0013 7 8 5.8645 -1.1547 0.1081 8 7 4.5627 -2.9406 -0.1236 9 6 3.2080 -3.4965 -0.1700 10 6 5.7231 -3.8307 -0.2098 11 1 6.6508 -3.2588 -0.2295 12 6 5.7259 -4.8553 0.9553 13 6 4.7707 -5.9566 0.4494 14 7 4.7226 -5.8532 -1.0163 15 6 3.9713 -6.6404 -1.8477 16 1 4.0667 -6.5397 -2.9187 17 6 3.0871 -7.5677 -1.3138 18 7 2.8997 -7.6249 -0.0122 19 14 2.1690 -8.7399 -2.4419 20 1 0.8295 -8.1795 -2.7537 21 1 2.9362 -8.9180 -3.7008 22 1 2.0113 -10.0538 -1.7681 23 6 5.6219 -4.7660 -1.4434 24 8 2.2869 -1.0888 -0.0062 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3632 0.8900 0.5138 28 1 1.9614 2.1260 0.0005 29 1 4.5114 1.2701 -0.0011 30 1 2.8373 -3.6354 0.8455 31 1 2.5519 -2.8104 -0.7057 32 1 3.2270 -4.4573 -0.6845 33 1 5.3418 -4.4013 1.8689 34 1 6.7264 -5.2568 1.1170 35 1 3.7748 -5.8031 0.8648 36 1 5.1459 -6.9380 0.7397 37 1 2.2848 -8.2756 0.3611 38 1 6.6030 -5.1646 -1.7016 39 1 5.1940 -4.2305 -2.2908 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032887593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:22 Heat of formation + Delta-G solvation = 4.939432 kcal Electronic energy + Delta-G solvation = -22393.909731 eV Core-core repulsion = 19111.079669 eV Total energy + Delta-G solvation = -3282.830063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.73751 -41.09760 -39.07306 -35.99859 -34.38534 -33.91760 -32.84146 -31.21381 -29.64949 -28.25334 -27.48808 -26.16463 -23.76062 -22.52614 -21.96773 -21.60995 -20.52165 -18.95585 -18.60073 -17.76442 -17.56334 -16.67589 -16.43492 -16.11923 -15.68541 -15.64516 -14.78899 -14.42990 -14.16408 -14.10292 -14.00835 -13.83548 -13.71478 -13.46739 -13.40671 -13.03410 -12.86011 -12.76764 -12.64917 -12.38461 -12.04164 -11.97421 -11.84460 -11.59102 -11.19370 -11.01625 -10.72581 -9.87007 -9.42172 -8.81153 -7.81651 -5.19730 0.00551 1.35695 1.48728 1.50113 1.57765 1.58743 2.03214 2.09698 2.50698 3.36184 3.42945 3.63109 3.82380 3.87627 3.95641 3.98921 4.27154 4.33791 4.53229 4.57377 4.63794 4.65075 4.68210 4.73085 4.75899 4.86663 4.93592 4.94359 5.01144 5.13052 5.28553 5.46671 5.46845 5.52576 5.63120 5.80140 5.95974 6.20248 6.29780 6.90113 7.10950 7.75957 8.40599 9.26104 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.005489 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.876292 B = 5100.261204 C = 6111.026016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.011 3.989 3 C -0.225 4.225 4 C -0.115 4.115 5 C -0.111 4.111 6 C 0.593 3.407 7 O -0.562 6.562 8 N -0.581 5.581 9 C 0.074 3.926 10 C 0.130 3.870 11 H 0.114 0.886 12 C -0.140 4.140 13 C 0.181 3.819 14 N -0.614 5.614 15 C -0.241 4.241 16 H 0.080 0.920 17 C -0.054 4.054 18 N -0.943 5.943 19 Si 0.972 3.028 20 H -0.286 1.286 21 H -0.273 1.273 22 H -0.297 1.297 23 C 0.125 3.875 24 O -0.168 6.168 25 H 0.100 0.900 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.188 0.812 29 H 0.166 0.834 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.038 0.962 36 H 0.000 1.000 37 H 0.247 0.753 38 H 0.048 0.952 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.889 16.015 0.830 16.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 C -0.244 4.244 4 C -0.136 4.136 5 C -0.162 4.162 6 C 0.383 3.617 7 O -0.444 6.444 8 N -0.310 5.310 9 C -0.069 4.069 10 C 0.026 3.974 11 H 0.132 0.868 12 C -0.179 4.179 13 C 0.056 3.944 14 N -0.341 5.341 15 C -0.370 4.370 16 H 0.098 0.902 17 C -0.248 4.248 18 N -0.592 5.592 19 Si 0.801 3.199 20 H -0.213 1.213 21 H -0.198 1.198 22 H -0.223 1.223 23 C -0.001 4.001 24 O -0.065 6.065 25 H 0.118 0.882 26 H 0.098 0.902 27 H 0.138 0.862 28 H 0.205 0.795 29 H 0.184 0.816 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.056 0.944 36 H 0.018 0.982 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.544 15.720 0.886 16.139 hybrid contribution -0.351 -0.998 -0.333 1.110 sum -3.895 14.722 0.553 15.238 Atomic orbital electron populations 1.20652 0.81859 1.05782 1.05221 1.23864 0.96143 0.84138 0.99946 1.21915 0.90953 1.01126 1.10379 1.22196 1.00069 0.92080 0.99257 1.21824 0.82098 0.94851 1.17422 1.17010 0.86548 0.81441 0.76659 1.90778 1.23579 1.76394 1.53687 1.47676 1.08466 1.05197 1.69649 1.22243 0.80887 1.01962 1.01794 1.22285 0.88650 0.90195 0.96306 0.86817 1.23107 1.01189 0.96255 0.97364 1.21036 0.96514 0.93562 0.83296 1.44756 1.49514 1.37084 1.02737 1.19334 1.14948 1.13151 0.89529 0.90236 1.25508 1.00529 1.01519 0.97244 1.70153 1.39884 1.38281 1.10852 0.85163 0.78543 0.78138 0.78063 1.21266 1.19781 1.22346 1.22063 0.94412 0.88550 0.95029 1.84328 1.15930 1.35364 1.70884 0.88194 0.90191 0.86229 0.79475 0.81639 0.93758 0.90466 0.88061 0.91140 0.89171 0.94352 0.98225 0.94339 0.93406 0.93919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.41 71.24 0.74 -0.26 16 2 C 0.01 0.25 7.31 24.97 0.18 0.43 16 3 C -0.23 -4.55 10.77 22.07 0.24 -4.31 16 4 C -0.12 -3.04 10.63 22.39 0.24 -2.80 16 5 C -0.11 -3.57 6.78 24.07 0.16 -3.41 16 6 C 0.59 22.03 7.64 86.44 0.66 22.69 16 7 O -0.56 -22.63 16.26 -4.31 -0.07 -22.70 16 8 N -0.58 -21.99 2.91 -819.10 -2.39 -24.38 16 9 C 0.07 2.87 8.03 127.77 1.03 3.90 16 10 C 0.13 4.86 3.66 46.46 0.17 5.03 16 11 H 0.11 4.04 7.03 -2.39 -0.02 4.02 16 12 C -0.14 -5.31 6.48 31.78 0.21 -5.10 16 13 C 0.18 8.63 4.36 86.73 0.38 9.01 16 14 N -0.61 -30.07 1.86 -691.58 -1.29 -31.36 16 15 C -0.24 -12.88 9.80 84.03 0.82 -12.06 16 16 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 17 C -0.05 -2.94 5.47 84.86 0.46 -2.48 16 18 N -0.94 -54.06 10.39 21.65 0.23 -53.83 16 19 Si 0.97 44.28 29.56 68.60 2.03 46.31 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 23 C 0.13 5.13 6.47 86.94 0.56 5.69 16 24 O -0.17 -5.01 7.25 -5.06 -0.04 -5.05 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.19 2.34 8.06 -2.91 -0.02 2.31 16 29 H 0.17 3.94 8.06 -2.91 -0.02 3.92 16 30 H 0.04 1.73 8.12 -2.39 -0.02 1.71 16 31 H 0.08 2.81 5.30 -2.39 -0.01 2.80 16 32 H 0.10 4.70 4.38 -2.39 -0.01 4.69 16 33 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 34 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.04 2.03 6.02 -2.39 -0.01 2.01 16 36 H 0.00 -0.03 7.88 -2.39 -0.02 -0.05 16 37 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -65.73 315.36 5.38 -60.35 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 1.05 Total: 14.33 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 5.85 Total: 16.33 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -3.45 Total: -109.57 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.11 Total: -27.75 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -65.73 5.38 -60.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032887593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.292 kcal (2) G-P(sol) polarization free energy of solvation -65.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds