Wall clock time and date at job start Tue Mar 31 2020 00:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33656 * 125.80297 * 2 1 4 4 C 1.34214 * 110.90831 * 179.97438 * 3 2 1 5 5 C 1.34176 * 109.12552 * 359.74432 * 4 3 2 6 6 C 1.36419 * 125.79972 * 179.97438 * 2 1 3 7 7 C 1.47376 * 127.19336 * 359.97182 * 6 2 1 8 8 O 1.21618 * 119.99793 * 35.39097 * 7 6 2 9 9 N 1.34777 * 119.99952 * 215.39083 * 7 6 2 10 10 C 1.46497 * 119.99920 * 355.56365 * 9 7 6 11 11 C 1.46498 * 119.99754 * 175.56411 * 9 7 6 12 12 H 1.09001 * 110.89042 * 3.87634 * 11 9 7 13 13 C 1.55156 * 111.00121 * 239.99947 * 11 9 7 14 14 C 1.54324 * 102.94424 * 206.42578 * 13 11 9 15 15 N 1.47020 * 107.26763 * 22.19238 * 14 13 11 16 16 C 1.36937 * 125.64572 * 181.02448 * 15 14 13 17 17 H 1.08001 * 120.00065 * 185.05430 * 16 15 14 18 18 C 1.38816 * 120.00331 * 5.05692 * 16 15 14 19 19 N 1.31618 * 119.99589 * 5.08324 * 18 16 15 20 20 Si 1.86796 * 120.00137 * 184.80667 * 18 16 15 21 21 H 1.48493 * 109.47541 * 265.27249 * 20 18 16 22 22 H 1.48501 * 109.47028 * 25.27508 * 20 18 16 23 23 H 1.48499 * 109.46956 * 145.27019 * 20 18 16 24 24 C 1.47423 * 108.70738 * 1.28966 * 15 14 13 25 25 H 1.09003 * 109.47324 * 270.00530 * 1 2 3 26 26 H 1.09004 * 109.46634 * 30.00766 * 1 2 3 27 27 H 1.08997 * 109.46658 * 150.00227 * 1 2 3 28 28 H 1.08000 * 125.43506 * 180.02562 * 4 3 2 29 29 H 1.08000 * 127.02459 * 180.26752 * 5 4 3 30 30 H 1.09000 * 109.47228 * 275.38484 * 10 9 7 31 31 H 1.09001 * 109.47634 * 35.38291 * 10 9 7 32 32 H 1.09003 * 109.47225 * 155.38459 * 10 9 7 33 33 H 1.09002 * 110.72369 * 88.06298 * 13 11 9 34 34 H 1.09008 * 110.87535 * 324.85936 * 13 11 9 35 35 H 1.08998 * 109.88333 * 262.77634 * 14 13 11 36 36 H 1.09002 * 110.01543 * 141.67948 * 14 13 11 37 37 H 0.97001 * 119.99987 * 179.73160 * 19 18 16 38 38 H 1.08991 * 110.36922 * 94.47797 * 24 15 14 39 39 H 1.08999 * 110.36745 * 216.80720 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5860 0.7390 0.0006 5 6 3.6849 -0.5991 0.0066 6 6 2.3050 -1.1064 0.0005 7 6 1.8740 -2.5158 0.0017 8 8 0.8748 -2.8465 -0.6077 9 7 2.5870 -3.4380 0.6781 10 6 3.8425 -3.0589 1.3310 11 6 2.1066 -4.8195 0.7604 12 1 1.2007 -4.9519 0.1689 13 6 1.8740 -5.2404 2.2355 14 6 2.0585 -6.7720 2.1912 15 7 2.8640 -7.0802 1.0006 16 6 3.2345 -8.3330 0.5901 17 1 3.8967 -8.4506 -0.2549 18 6 2.7588 -9.4519 1.2600 19 7 1.8743 -9.3145 2.2250 20 14 3.3681 -11.1531 0.7868 21 1 2.4252 -11.7645 -0.1838 22 1 4.7134 -11.0425 0.1676 23 1 3.4504 -12.0047 2.0006 24 6 3.2123 -5.8169 0.3252 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3632 -0.8900 -0.5138 28 1 4.4173 1.4284 0.0011 29 1 4.5928 -1.1840 0.0126 30 1 4.6564 -3.1037 0.6073 31 1 3.7578 -2.0441 1.7200 32 1 4.0475 -3.7466 2.1514 33 1 0.8644 -4.9828 2.5555 34 1 2.6139 -4.7817 2.8916 35 1 1.0869 -7.2604 2.1181 36 1 2.5774 -7.1113 3.0877 37 1 1.5390 -10.0966 2.6905 38 1 4.1914 -5.4685 0.6538 39 1 3.1991 -5.9489 -0.7567 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032897809.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:35 Heat of formation + Delta-G solvation = 16.372061 kcal Electronic energy + Delta-G solvation = -21849.036980 eV Core-core repulsion = 18566.702673 eV Total energy + Delta-G solvation = -3282.334307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.70176 -39.61311 -37.27164 -34.86015 -33.18710 -32.15630 -31.80407 -29.23191 -27.70814 -27.22767 -26.37373 -24.55677 -23.04866 -21.50926 -20.11064 -19.80603 -18.79233 -17.55619 -16.95760 -16.58179 -16.25395 -15.64681 -14.89815 -14.67143 -14.44834 -14.05423 -13.49843 -13.42023 -13.14653 -13.12799 -12.78517 -12.71540 -12.38329 -12.20904 -11.91936 -11.85363 -11.71277 -10.92811 -10.83595 -10.78296 -10.27981 -10.08953 -9.91066 -9.81711 -9.72588 -9.62930 -8.72582 -8.62808 -8.29928 -6.83252 -5.70014 -3.06221 1.35191 1.96195 2.67040 3.11182 3.31357 3.41212 3.46401 3.48351 4.38060 4.51279 4.64302 4.78415 5.07296 5.26022 5.32297 5.33025 5.40297 5.42201 5.48485 5.58098 5.64913 5.68587 5.74398 5.75619 5.90569 6.00474 6.14448 6.21570 6.32137 6.50795 6.59843 6.71123 6.87113 7.00682 7.48375 7.61300 7.65213 7.82944 8.25601 8.35770 9.20927 9.81394 10.46611 11.39970 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.041168 B = 0.003708 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.977721 B = 7548.418276 C = 7771.651622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.065 3.935 3 O -0.178 6.178 4 C -0.044 4.044 5 C -0.186 4.186 6 C -0.234 4.234 7 C 0.587 3.413 8 O -0.543 6.543 9 N -0.592 5.592 10 C 0.075 3.925 11 C 0.124 3.876 12 H 0.108 0.892 13 C -0.152 4.152 14 C 0.175 3.825 15 N -0.602 5.602 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.290 1.290 24 C 0.131 3.869 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.207 0.793 29 H 0.160 0.840 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.252 0.748 38 H 0.022 0.978 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.617 20.799 -1.007 20.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.012 3.988 3 O -0.075 6.075 4 C -0.110 4.110 5 C -0.206 4.206 6 C -0.238 4.238 7 C 0.376 3.624 8 O -0.421 6.421 9 N -0.323 5.323 10 C -0.068 4.068 11 C 0.020 3.980 12 H 0.126 0.874 13 C -0.191 4.191 14 C 0.050 3.950 15 N -0.329 5.329 16 C -0.358 4.358 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.206 1.206 23 H -0.217 1.217 24 C 0.004 3.996 25 H 0.104 0.896 26 H 0.098 0.902 27 H 0.127 0.873 28 H 0.223 0.777 29 H 0.178 0.822 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.040 0.960 39 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.964 20.659 -1.248 20.790 hybrid contribution 0.779 -1.055 -0.094 1.315 sum 2.744 19.604 -1.342 19.841 Atomic orbital electron populations 1.20596 0.84030 1.05407 1.04157 1.22697 0.93974 0.83049 0.99072 1.83743 1.17129 1.34979 1.71633 1.23839 0.83545 0.96360 1.07268 1.23067 0.96835 0.94319 1.06340 1.21186 0.93487 0.93994 1.15171 1.17271 0.82833 0.83719 0.78571 1.90757 1.26680 1.81042 1.43667 1.47629 1.23163 1.09688 1.51854 1.21975 0.85502 1.01267 0.98016 1.22541 0.99218 0.78216 0.98003 0.87407 1.23230 1.00720 1.00127 0.95032 1.21205 0.97091 0.87011 0.89691 1.44387 1.61591 1.00440 1.26467 1.19061 1.23226 0.81281 1.12186 0.90404 1.24820 0.98917 0.97868 0.98739 1.69953 1.32558 1.28255 1.25986 0.86087 0.78225 0.84068 0.77304 1.21582 1.20643 1.21650 1.21800 0.94410 0.87006 0.96371 0.89630 0.90204 0.87298 0.77688 0.82247 0.92666 0.91007 0.90364 0.91881 0.92209 0.91939 0.94815 0.93730 0.96003 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.21 36.01 0.37 -0.49 16 2 C 0.06 0.78 7.37 -34.96 -0.26 0.52 16 3 O -0.18 -1.93 10.52 7.65 0.08 -1.85 16 4 C -0.04 -0.39 12.03 29.30 0.35 -0.03 16 5 C -0.19 -1.93 8.78 -37.45 -0.33 -2.26 16 6 C -0.23 -3.16 5.54 -103.27 -0.57 -3.74 16 7 C 0.59 9.76 7.49 -12.54 -0.09 9.67 16 8 O -0.54 -10.64 14.86 5.26 0.08 -10.56 16 9 N -0.59 -9.51 2.91 -172.63 -0.50 -10.02 16 10 C 0.08 0.93 7.61 59.85 0.46 1.39 16 11 C 0.12 2.38 3.46 -65.66 -0.23 2.15 16 12 H 0.11 2.31 7.02 -51.93 -0.36 1.94 16 13 C -0.15 -2.92 6.49 -24.90 -0.16 -3.08 16 14 C 0.18 4.28 5.42 -3.06 -0.02 4.26 16 15 N -0.60 -15.60 3.39 -169.94 -0.58 -16.18 16 16 C -0.23 -6.47 10.27 -15.06 -0.15 -6.62 16 17 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 18 C -0.01 -0.20 5.46 -17.43 -0.10 -0.30 16 19 N -0.92 -27.14 10.39 55.49 0.58 -26.56 16 20 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 C 0.13 2.81 6.79 -2.41 -0.02 2.79 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.11 1.30 6.57 -51.93 -0.34 0.96 16 28 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 29 H 0.16 1.37 6.39 -52.49 -0.34 1.03 16 30 H 0.05 0.61 7.36 -51.93 -0.38 0.23 16 31 H 0.07 0.76 5.81 -51.93 -0.30 0.46 16 32 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 1.04 6.48 -51.92 -0.34 0.70 16 35 H 0.06 1.71 6.97 -51.93 -0.36 1.35 16 36 H 0.03 0.89 7.88 -51.93 -0.41 0.48 16 37 H 0.25 7.21 8.31 -40.82 -0.34 6.88 16 38 H 0.02 0.45 6.95 -51.93 -0.36 0.09 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -33.29 314.45 -6.56 -39.85 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.18 Total: -0.88 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -0.75 Total: 4.27 kcal Atomic # 7 Polarization: -52.26 SS G_CDS: -0.50 Total: -52.76 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.16 Total: -12.41 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.29 -6.56 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032897809.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.220 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds