Wall clock time and date at job start Tue Mar 31 2020 01:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40366 * 126.64544 * 2 1 4 4 C 1.35132 * 107.11304 * 180.22180 * 3 2 1 5 5 O 1.33932 * 108.76515 * 359.77247 * 4 3 2 6 6 C 1.34915 * 109.38722 * 0.02562 * 5 4 3 7 7 C 1.46651 * 125.98418 * 179.97438 * 6 5 4 8 8 O 1.21701 * 119.99866 * 186.29741 * 7 6 5 9 9 N 1.34772 * 120.00485 * 6.29825 * 7 6 5 10 10 C 1.46501 * 119.99963 * 356.25100 * 9 7 6 11 11 C 1.46504 * 120.00319 * 176.25281 * 9 7 6 12 12 H 1.08996 * 110.63879 * 356.85448 * 11 9 7 13 13 C 1.55151 * 110.71986 * 120.00003 * 11 9 7 14 14 C 1.54909 * 101.58180 * 153.86563 * 13 11 9 15 15 N 1.47420 * 104.92738 * 322.93397 * 14 13 11 16 16 C 1.36940 * 125.64619 * 204.15085 * 15 14 13 17 17 H 1.07997 * 119.99605 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00159 * 0.03091 * 16 15 14 19 19 N 1.31624 * 119.99928 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47144 * 59.99665 * 20 18 16 22 22 H 1.48494 * 109.47131 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46832 * 299.99922 * 20 18 16 24 24 C 1.47290 * 108.55967 * 24.15520 * 15 14 13 25 25 H 1.09001 * 109.47215 * 270.15885 * 1 2 3 26 26 H 1.09002 * 109.47037 * 30.16102 * 1 2 3 27 27 H 1.09000 * 109.46744 * 150.15538 * 1 2 3 28 28 H 1.07998 * 126.44291 * 359.97438 * 3 2 1 29 29 H 1.07996 * 125.61562 * 179.78057 * 4 3 2 30 30 H 1.08995 * 109.47162 * 275.71470 * 10 9 7 31 31 H 1.09005 * 109.47111 * 35.71395 * 10 9 7 32 32 H 1.09002 * 109.47269 * 155.70655 * 10 9 7 33 33 H 1.08997 * 111.00817 * 35.79171 * 13 11 9 34 34 H 1.09004 * 111.03848 * 271.94959 * 13 11 9 35 35 H 1.09004 * 110.36634 * 81.83127 * 14 13 11 36 36 H 1.09007 * 110.36541 * 204.03797 * 14 13 11 37 37 H 0.96995 * 119.99583 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.85414 * 239.49819 * 24 15 14 39 39 H 1.09007 * 109.87169 * 118.35614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0030 6 6 2.3220 -1.0956 0.0027 7 6 1.8843 -2.4952 0.0059 8 8 0.7024 -2.7634 -0.1045 9 7 2.7909 -3.4846 0.1312 10 6 4.2200 -3.1664 0.1816 11 6 2.3473 -4.8782 0.2170 12 1 1.2588 -4.9354 0.2204 13 6 2.9375 -5.7149 -0.9486 14 6 2.9520 -7.1369 -0.3345 15 7 3.3083 -6.9353 1.0818 16 6 3.8867 -7.8688 1.8999 17 1 4.1091 -7.6224 2.9275 18 6 4.1871 -9.1317 1.4083 19 7 3.9155 -9.4322 0.1559 20 14 4.9768 -10.4049 2.5241 21 1 4.0832 -10.6728 3.6795 22 1 5.1936 -11.6623 1.7646 23 1 6.2807 -9.8916 3.0155 24 6 2.9377 -5.5630 1.4676 25 1 -0.3634 0.0028 1.0277 26 1 -0.3633 0.8886 -0.5163 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0307 2.1595 -0.0004 29 1 4.5046 1.2916 -0.0097 30 1 4.6063 -3.0677 -0.8328 31 1 4.3649 -2.2288 0.7183 32 1 4.7523 -3.9659 0.6970 33 1 3.9469 -5.3851 -1.1943 34 1 2.2913 -5.6747 -1.8255 35 1 1.9666 -7.5956 -0.4163 36 1 3.7001 -7.7563 -0.8294 37 1 4.1251 -10.3148 -0.1875 38 1 3.8217 -5.0216 1.8043 39 1 2.1920 -5.5902 2.2623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032910080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:04 Heat of formation + Delta-G solvation = 20.610566 kcal Electronic energy + Delta-G solvation = -21949.843357 eV Core-core repulsion = 18667.692846 eV Total energy + Delta-G solvation = -3282.150511 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.84581 -39.64368 -37.36206 -35.05507 -33.98921 -32.20604 -30.55236 -29.23954 -27.99829 -27.35486 -26.44470 -24.53522 -22.82942 -21.57352 -20.21621 -19.88018 -19.07494 -17.53234 -17.00024 -16.65670 -16.44044 -15.78291 -14.78704 -14.63802 -14.21812 -13.99254 -13.67167 -13.38259 -13.23195 -13.00376 -12.91923 -12.70901 -12.33030 -11.95523 -11.87642 -11.65738 -11.54005 -11.05497 -10.88436 -10.79709 -10.47684 -10.15194 -9.89991 -9.82788 -9.79425 -9.56108 -8.79635 -8.66829 -8.32213 -6.86538 -5.66635 -3.09387 1.00829 2.20691 2.60986 3.16653 3.24064 3.40121 3.44401 3.45790 4.45565 4.49199 4.64633 4.73338 5.28066 5.32153 5.39679 5.40507 5.42460 5.51494 5.54168 5.63798 5.70947 5.72964 5.81465 5.87723 6.01347 6.09060 6.23746 6.30815 6.35316 6.51471 6.56655 6.68726 6.73731 6.99617 7.46855 7.53058 7.59997 7.82910 8.16334 8.33469 9.19482 9.79782 10.44338 11.36886 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.003817 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.845698 B = 7334.722972 C = 7596.753363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.094 4.094 3 C -0.225 4.225 4 C -0.017 4.017 5 O -0.155 6.155 6 C -0.074 4.074 7 C 0.597 3.403 8 O -0.524 6.524 9 N -0.589 5.589 10 C 0.070 3.930 11 C 0.126 3.874 12 H 0.106 0.894 13 C -0.151 4.151 14 C 0.153 3.847 15 N -0.602 5.602 16 C -0.224 4.224 17 H 0.077 0.923 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.916 3.084 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.128 3.872 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.207 0.793 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.015 0.985 36 H 0.110 0.890 37 H 0.253 0.747 38 H 0.031 0.969 39 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 20.282 -2.007 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.244 4.244 4 C -0.086 4.086 5 O -0.051 6.051 6 C -0.126 4.126 7 C 0.385 3.615 8 O -0.404 6.404 9 N -0.320 5.320 10 C -0.072 4.072 11 C 0.023 3.977 12 H 0.124 0.876 13 C -0.191 4.191 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.352 4.352 17 H 0.095 0.905 18 C -0.205 4.205 19 N -0.570 5.570 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.001 3.999 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.171 0.829 29 H 0.224 0.776 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.033 0.967 36 H 0.128 0.872 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -0.799 19.660 -2.067 19.784 hybrid contribution 0.495 -0.281 0.606 0.831 sum -0.304 19.379 -1.462 19.436 Atomic orbital electron populations 1.20436 0.88326 1.03667 1.02807 1.20623 0.97640 0.90984 1.00408 1.21709 0.92509 0.99988 1.10185 1.24410 0.99841 0.81472 1.02919 1.84342 1.28244 1.21989 1.70538 1.21965 0.81378 0.94891 1.14387 1.16664 0.85565 0.81798 0.77472 1.90818 1.16017 1.82053 1.51462 1.47784 1.06961 1.06787 1.70434 1.22031 0.80615 1.02298 1.02299 1.22331 1.00397 0.77626 0.97335 0.87638 1.23381 1.00007 0.99089 0.96581 1.21950 1.00249 0.90624 0.84400 1.44486 1.71522 1.08138 1.08749 1.19023 1.31913 0.91341 0.92938 0.90487 1.24793 1.01570 0.97483 0.96675 1.69775 1.53128 1.20800 1.13327 0.86130 0.79109 0.80755 0.79358 1.21184 1.21539 1.21148 1.21590 0.96820 0.87604 0.93881 0.90975 0.91648 0.89228 0.82942 0.77632 0.92456 0.90310 0.89395 0.91731 0.91949 0.96656 0.87226 0.93606 0.95153 0.95505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.09 9.89 36.01 0.36 -0.73 16 2 C -0.09 -1.17 6.20 -104.43 -0.65 -1.82 16 3 C -0.22 -2.15 10.83 -39.89 -0.43 -2.58 16 4 C -0.02 -0.15 12.08 29.63 0.36 0.21 16 5 O -0.16 -1.85 7.26 4.99 0.04 -1.81 16 6 C -0.07 -1.05 6.77 -36.80 -0.25 -1.30 16 7 C 0.60 10.02 7.64 -12.87 -0.10 9.92 16 8 O -0.52 -9.94 14.10 5.19 0.07 -9.87 16 9 N -0.59 -9.77 2.89 -173.39 -0.50 -10.27 16 10 C 0.07 0.97 8.42 59.85 0.50 1.48 16 11 C 0.13 2.40 3.35 -66.10 -0.22 2.18 16 12 H 0.11 2.12 7.01 -51.93 -0.36 1.76 16 13 C -0.15 -2.96 6.66 -24.59 -0.16 -3.13 16 14 C 0.15 3.73 5.88 -2.53 -0.01 3.72 16 15 N -0.60 -15.47 3.40 -169.86 -0.58 -16.05 16 16 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 17 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 20 Si 0.92 21.94 29.55 -169.99 -5.02 16.92 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.13 2.73 6.78 -2.92 -0.02 2.72 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 1.20 6.34 -51.93 -0.33 0.87 16 28 H 0.15 1.05 8.06 -52.49 -0.42 0.62 16 29 H 0.21 0.88 8.06 -52.49 -0.42 0.46 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.98 5.34 -51.93 -0.28 0.70 16 32 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 33 H 0.06 1.22 7.34 -51.93 -0.38 0.84 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.11 2.97 5.87 -51.93 -0.30 2.67 16 37 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.03 0.63 6.01 -51.93 -0.31 0.32 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 314.06 15.07 4.73 4.73 Total: -1.00 -31.68 314.06 -6.80 -38.47 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.22 Total: 0.11 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.88 Total: 3.91 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.52 Total: -52.47 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.11 Total: -11.68 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.68 -6.80 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032910080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.083 kcal (2) G-P(sol) polarization free energy of solvation -31.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds