Wall clock time and date at job start Tue Mar 31 2020 01:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.40366 * 126.64544 * 2 1 4 4 C 1.35132 * 107.11304 * 180.22180 * 3 2 1 5 5 O 1.33932 * 108.76515 * 359.77247 * 4 3 2 6 6 C 1.34915 * 109.38722 * 0.02562 * 5 4 3 7 7 C 1.46651 * 125.98418 * 179.97438 * 6 5 4 8 8 O 1.21701 * 119.99866 * 186.29741 * 7 6 5 9 9 N 1.34772 * 120.00485 * 6.29825 * 7 6 5 10 10 C 1.46501 * 119.99963 * 356.25100 * 9 7 6 11 11 C 1.46504 * 120.00319 * 176.25281 * 9 7 6 12 12 H 1.08996 * 110.63879 * 356.85448 * 11 9 7 13 13 C 1.55151 * 110.71986 * 120.00003 * 11 9 7 14 14 C 1.54909 * 101.58180 * 153.86563 * 13 11 9 15 15 N 1.47420 * 104.92738 * 322.93397 * 14 13 11 16 16 C 1.36940 * 125.64619 * 204.15085 * 15 14 13 17 17 H 1.07997 * 119.99605 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00159 * 0.03091 * 16 15 14 19 19 N 1.31624 * 119.99928 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00085 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47144 * 59.99665 * 20 18 16 22 22 H 1.48494 * 109.47131 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.46832 * 299.99922 * 20 18 16 24 24 C 1.47290 * 108.55967 * 24.15520 * 15 14 13 25 25 H 1.09001 * 109.47215 * 270.15885 * 1 2 3 26 26 H 1.09002 * 109.47037 * 30.16102 * 1 2 3 27 27 H 1.09000 * 109.46744 * 150.15538 * 1 2 3 28 28 H 1.07998 * 126.44291 * 359.97438 * 3 2 1 29 29 H 1.07996 * 125.61562 * 179.78057 * 4 3 2 30 30 H 1.08995 * 109.47162 * 275.71470 * 10 9 7 31 31 H 1.09005 * 109.47111 * 35.71395 * 10 9 7 32 32 H 1.09002 * 109.47269 * 155.70655 * 10 9 7 33 33 H 1.08997 * 111.00817 * 35.79171 * 13 11 9 34 34 H 1.09004 * 111.03848 * 271.94959 * 13 11 9 35 35 H 1.09004 * 110.36634 * 81.83127 * 14 13 11 36 36 H 1.09007 * 110.36541 * 204.03797 * 14 13 11 37 37 H 0.96995 * 119.99583 * 180.02562 * 19 18 16 38 38 H 1.08997 * 109.85414 * 239.49819 * 24 15 14 39 39 H 1.09007 * 109.87169 * 118.35614 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0050 5 8 3.6005 -0.6648 -0.0030 6 6 2.3220 -1.0956 0.0027 7 6 1.8843 -2.4952 0.0059 8 8 0.7024 -2.7634 -0.1045 9 7 2.7909 -3.4846 0.1312 10 6 4.2200 -3.1664 0.1816 11 6 2.3473 -4.8782 0.2170 12 1 1.2588 -4.9354 0.2204 13 6 2.9375 -5.7149 -0.9486 14 6 2.9520 -7.1369 -0.3345 15 7 3.3083 -6.9353 1.0818 16 6 3.8867 -7.8688 1.8999 17 1 4.1091 -7.6224 2.9275 18 6 4.1871 -9.1317 1.4083 19 7 3.9155 -9.4322 0.1559 20 14 4.9768 -10.4049 2.5241 21 1 4.0832 -10.6728 3.6795 22 1 5.1936 -11.6623 1.7646 23 1 6.2807 -9.8916 3.0155 24 6 2.9377 -5.5630 1.4676 25 1 -0.3634 0.0028 1.0277 26 1 -0.3633 0.8886 -0.5163 27 1 -0.3633 -0.8914 -0.5114 28 1 2.0307 2.1595 -0.0004 29 1 4.5046 1.2916 -0.0097 30 1 4.6063 -3.0677 -0.8328 31 1 4.3649 -2.2288 0.7183 32 1 4.7523 -3.9659 0.6970 33 1 3.9469 -5.3851 -1.1943 34 1 2.2913 -5.6747 -1.8255 35 1 1.9666 -7.5956 -0.4163 36 1 3.7001 -7.7563 -0.8294 37 1 4.1251 -10.3148 -0.1875 38 1 3.8217 -5.0216 1.8043 39 1 2.1920 -5.5902 2.2623 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032910080.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:03 Heat of formation + Delta-G solvation = 0.946591 kcal Electronic energy + Delta-G solvation = -21950.696051 eV Core-core repulsion = 18667.692846 eV Total energy + Delta-G solvation = -3283.003205 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -43.69746 -40.99718 -38.98584 -36.49524 -34.98056 -34.09013 -31.63283 -30.94671 -29.37408 -28.60109 -27.77245 -26.39075 -23.97409 -22.49246 -22.14716 -21.12140 -20.32096 -18.98474 -18.66838 -17.79520 -17.50598 -16.90816 -16.65339 -16.01673 -15.84645 -15.43435 -14.91434 -14.55935 -14.37046 -14.15291 -14.02283 -13.94534 -13.71492 -13.52264 -13.38907 -12.99058 -12.79937 -12.76990 -12.66605 -12.46632 -12.21522 -12.06556 -11.82484 -11.42192 -11.16889 -10.75766 -10.63625 -9.89096 -9.47461 -8.93482 -7.78219 -5.24539 0.04256 1.43865 1.47802 1.51341 1.56807 1.59726 2.02459 2.12152 2.50330 3.31908 3.48283 3.68886 3.83106 3.83712 3.90859 3.98029 4.17775 4.19810 4.51327 4.55773 4.59654 4.60723 4.66173 4.74026 4.76800 4.79813 4.92786 4.99194 5.03350 5.15112 5.26277 5.40713 5.43994 5.54542 5.55336 5.75211 5.93386 6.26624 6.28085 6.91033 7.07636 7.73075 8.37463 9.23388 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.038620 B = 0.003817 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.845698 B = 7334.722972 C = 7596.753363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.093 4.093 3 C -0.234 4.234 4 C 0.010 3.990 5 O -0.163 6.163 6 C -0.115 4.115 7 C 0.594 3.406 8 O -0.559 6.559 9 N -0.592 5.592 10 C 0.073 3.927 11 C 0.141 3.859 12 H 0.091 0.909 13 C -0.132 4.132 14 C 0.157 3.843 15 N -0.622 5.622 16 C -0.243 4.243 17 H 0.082 0.918 18 C -0.063 4.063 19 N -0.948 5.948 20 Si 0.984 3.016 21 H -0.280 1.280 22 H -0.293 1.293 23 H -0.274 1.274 24 C 0.129 3.871 25 H 0.075 0.925 26 H 0.091 0.909 27 H 0.063 0.937 28 H 0.183 0.817 29 H 0.256 0.744 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H -0.012 1.012 36 H 0.082 0.918 37 H 0.249 0.751 38 H 0.045 0.955 39 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 23.152 -1.624 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.096 4.096 3 C -0.253 4.253 4 C -0.060 4.060 5 O -0.059 6.059 6 C -0.166 4.166 7 C 0.384 3.616 8 O -0.440 6.440 9 N -0.322 5.322 10 C -0.068 4.068 11 C 0.037 3.963 12 H 0.109 0.891 13 C -0.172 4.172 14 C 0.032 3.968 15 N -0.348 5.348 16 C -0.372 4.372 17 H 0.100 0.900 18 C -0.256 4.256 19 N -0.597 5.597 20 Si 0.811 3.189 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.199 1.199 24 C 0.003 3.997 25 H 0.093 0.907 26 H 0.110 0.890 27 H 0.082 0.918 28 H 0.200 0.800 29 H 0.272 0.728 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.006 0.994 36 H 0.100 0.900 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.610 22.569 -1.674 22.639 hybrid contribution 0.054 -1.012 0.494 1.128 sum 0.664 21.557 -1.180 21.599 Atomic orbital electron populations 1.20449 0.88214 1.03660 1.03000 1.21007 0.98161 0.91786 0.98666 1.22069 0.92232 1.00544 1.10417 1.25439 1.01402 0.80248 0.98868 1.84286 1.27024 1.23751 1.70870 1.21428 0.82790 0.93645 1.18713 1.17020 0.85084 0.82950 0.76518 1.90791 1.17336 1.82944 1.52959 1.47753 1.08182 1.05522 1.70784 1.22130 0.78752 1.02681 1.03269 1.21886 0.99366 0.79281 0.95738 0.89062 1.23170 1.01113 0.95951 0.96933 1.21713 0.97678 0.93005 0.84417 1.44742 1.71490 1.09455 1.09153 1.19411 1.31967 0.92207 0.93570 0.90005 1.25652 1.02387 0.99416 0.98134 1.70020 1.54050 1.20818 1.14862 0.85079 0.78478 0.77845 0.77454 1.20660 1.21865 1.19937 1.21662 0.97145 0.86095 0.94794 0.90658 0.88994 0.91824 0.79961 0.72842 0.91156 0.88491 0.90497 0.90565 0.90481 0.99398 0.89976 0.94151 0.93731 0.96268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.10 9.89 71.24 0.70 -1.39 16 2 C -0.09 -2.14 6.20 -19.74 -0.12 -2.26 16 3 C -0.23 -3.52 10.83 22.07 0.24 -3.28 16 4 C 0.01 0.12 12.08 67.10 0.81 0.93 16 5 O -0.16 -3.39 7.26 -5.06 -0.04 -3.42 16 6 C -0.11 -3.09 6.77 24.07 0.16 -2.92 16 7 C 0.59 19.91 7.64 86.44 0.66 20.57 16 8 O -0.56 -21.79 14.10 -4.35 -0.06 -21.85 16 9 N -0.59 -19.42 2.89 -820.69 -2.37 -21.79 16 10 C 0.07 1.92 8.42 127.77 1.08 3.00 16 11 C 0.14 5.47 3.35 46.18 0.15 5.62 16 12 H 0.09 3.81 7.01 -2.39 -0.02 3.79 16 13 C -0.13 -5.23 6.66 31.98 0.21 -5.02 16 14 C 0.16 7.96 5.88 86.86 0.51 8.47 16 15 N -0.62 -32.70 3.40 -691.30 -2.35 -35.06 16 16 C -0.24 -13.71 10.28 84.03 0.86 -12.85 16 17 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 19 N -0.95 -56.46 10.09 21.65 0.22 -56.24 16 20 Si 0.98 45.47 29.55 68.60 2.03 47.50 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.13 5.60 6.78 86.68 0.59 6.19 16 25 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.73 6.34 -2.39 -0.02 1.72 16 28 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 29 H 0.26 0.53 8.06 -2.91 -0.02 0.51 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.10 2.20 5.34 -2.38 -0.01 2.19 16 32 H 0.08 2.19 6.17 -2.39 -0.01 2.18 16 33 H 0.08 2.84 7.34 -2.39 -0.02 2.82 16 34 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 35 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 36 H 0.08 4.64 5.87 -2.38 -0.01 4.63 16 37 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.04 1.82 6.01 -2.39 -0.01 1.81 16 39 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -71.13 314.06 4.81 -66.32 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.06 Total: 10.60 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.33 Total: 13.94 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.50 Total: -113.08 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.10 Total: -25.27 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -71.13 4.81 -66.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032910080.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.266 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds