Wall clock time and date at job start Tue Mar 31 2020 00:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34167 * 125.43817 * 2 1 4 4 C 1.47022 * 105.95390 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.18857 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99466 * 173.19386 * 5 4 3 7 7 N 1.34773 * 120.00440 * 353.19981 * 5 4 3 8 8 C 1.46500 * 119.99968 * 4.10017 * 7 5 4 9 9 C 1.46495 * 120.00272 * 184.10142 * 7 5 4 10 10 H 1.09008 * 110.77886 * 10.11488 * 9 7 5 11 11 C 1.55160 * 110.72200 * 246.87851 * 9 7 5 12 12 C 1.54903 * 101.61386 * 277.11811 * 11 9 7 13 13 N 1.47470 * 104.81217 * 323.04112 * 12 11 9 14 14 C 1.36938 * 125.63234 * 204.05278 * 13 12 11 15 15 H 1.07998 * 120.00572 * 180.02562 * 14 13 12 16 16 C 1.38820 * 119.99929 * 0.02562 * 14 13 12 17 17 N 1.31624 * 119.99411 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47116 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47141 * 119.99950 * 18 16 14 21 21 H 1.48503 * 109.46938 * 240.00317 * 18 16 14 22 22 C 1.47024 * 108.72253 * 24.07320 * 13 12 11 23 23 C 1.36410 * 105.61452 * 0.22774 * 4 3 2 24 24 O 1.33648 * 108.39648 * 359.63112 * 23 4 3 25 25 H 1.09001 * 109.46846 * 90.00029 * 1 2 3 26 26 H 1.09001 * 109.47103 * 209.99622 * 1 2 3 27 27 H 1.08995 * 109.47458 * 330.00399 * 1 2 3 28 28 H 1.08000 * 127.02394 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47383 * 183.96333 * 8 7 5 30 30 H 1.09004 * 109.47048 * 303.96637 * 8 7 5 31 31 H 1.09001 * 109.47068 * 63.96105 * 8 7 5 32 32 H 1.08996 * 111.00259 * 35.20907 * 11 9 7 33 33 H 1.09002 * 111.00255 * 159.02718 * 11 9 7 34 34 H 1.08994 * 110.37180 * 81.84911 * 12 11 9 35 35 H 1.09004 * 110.36994 * 204.17149 * 12 11 9 36 36 H 0.96999 * 119.99073 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.87923 * 239.55399 * 22 13 12 38 38 H 1.08996 * 109.88497 * 118.39086 * 22 13 12 39 39 H 1.08004 * 125.79936 * 179.74901 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9850 0.8727 0.1258 7 7 4.8289 2.7510 -0.1388 8 6 3.5221 3.4104 -0.1995 9 6 6.0556 3.5466 -0.2293 10 1 6.9268 2.9020 -0.3475 11 6 6.2121 4.4580 1.0166 12 6 5.3220 5.6663 0.6328 13 7 5.5289 5.8417 -0.8167 14 6 5.3449 7.0060 -1.5136 15 1 5.5235 7.0321 -2.5784 16 6 4.9288 8.1530 -0.8515 17 7 4.7117 8.1214 0.4463 18 14 4.6771 9.7411 -1.8022 19 1 4.9855 9.5133 -3.2369 20 1 3.2661 10.1826 -1.6638 21 1 5.5793 10.7897 -1.2620 22 6 5.9649 4.5599 -1.3897 23 6 3.5789 -0.7583 -0.0043 24 8 2.2852 -1.0935 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9595 2.1229 -0.0004 29 1 3.6609 4.4759 -0.3829 30 1 2.9332 2.9763 -1.0075 31 1 2.9998 3.2696 0.7468 32 1 5.8352 3.9638 1.9119 33 1 7.2500 4.7638 1.1490 34 1 4.2749 5.4479 0.8425 35 1 5.6397 6.5583 1.1728 36 1 4.4213 8.9229 0.9090 37 1 6.9424 4.6764 -1.8576 38 1 5.2380 4.2164 -2.1257 39 1 4.4103 -1.4477 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033031483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:44 Heat of formation + Delta-G solvation = 30.696761 kcal Electronic energy + Delta-G solvation = -22072.255625 eV Core-core repulsion = 18790.542484 eV Total energy + Delta-G solvation = -3281.713141 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.62113 -39.67520 -37.36696 -34.58795 -33.22634 -32.25356 -31.61448 -29.26567 -27.93458 -26.99382 -26.23232 -24.60542 -23.21290 -21.50926 -20.14822 -19.62143 -18.59513 -17.28398 -16.94635 -16.57532 -16.36670 -15.75631 -14.97002 -14.68785 -14.31596 -13.79888 -13.60274 -13.38120 -13.25070 -13.19235 -12.87481 -12.46215 -12.27309 -12.02903 -11.78458 -11.63415 -11.29594 -11.06469 -10.92250 -10.82606 -10.28203 -10.12718 -9.90039 -9.77189 -9.58790 -9.49950 -8.71781 -8.66105 -8.18239 -6.89835 -5.70351 -3.12825 1.39928 1.99529 2.75689 3.31197 3.36752 3.42893 3.44895 3.51374 4.41382 4.45129 4.78923 4.89127 5.10131 5.22764 5.29763 5.40129 5.43725 5.45805 5.52719 5.59441 5.64608 5.73515 5.84345 5.90513 5.97645 6.23993 6.27195 6.30539 6.38751 6.57131 6.61503 6.71294 6.93914 7.08431 7.43173 7.58895 7.74335 7.81776 8.30359 8.43364 9.16634 9.77011 10.41289 11.33125 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004437 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.757106 B = 6308.483827 C = 7004.876145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 C -0.198 4.198 4 C -0.229 4.229 5 C 0.584 3.416 6 O -0.556 6.556 7 N -0.583 5.583 8 C 0.058 3.942 9 C 0.126 3.874 10 H 0.099 0.901 11 C -0.155 4.155 12 C 0.146 3.854 13 N -0.603 5.603 14 C -0.223 4.223 15 H 0.078 0.922 16 C -0.009 4.009 17 N -0.921 5.921 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.127 3.873 23 C 0.040 3.960 24 O -0.178 6.178 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.174 0.826 29 H 0.114 0.886 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.020 0.980 35 H 0.107 0.893 36 H 0.252 0.748 37 H 0.035 0.965 38 H 0.029 0.971 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 -14.790 0.347 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.069 4.069 3 C -0.217 4.217 4 C -0.233 4.233 5 C 0.374 3.626 6 O -0.437 6.437 7 N -0.313 5.313 8 C -0.085 4.085 9 C 0.023 3.977 10 H 0.117 0.883 11 C -0.194 4.194 12 C 0.022 3.978 13 N -0.330 5.330 14 C -0.351 4.351 15 H 0.096 0.904 16 C -0.205 4.205 17 N -0.570 5.570 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.001 3.999 23 C -0.031 4.031 24 O -0.074 6.074 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.191 0.809 29 H 0.132 0.868 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.037 0.963 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -6.837 -15.092 0.428 16.574 hybrid contribution -0.088 1.020 -0.467 1.125 sum -6.925 -14.072 -0.039 15.684 Atomic orbital electron populations 1.20319 0.84849 1.04137 1.03619 1.22384 0.94124 0.83896 1.06535 1.23538 0.90814 1.00494 1.06827 1.21466 0.94053 0.94002 1.13777 1.17297 0.87181 0.81778 0.76386 1.90743 1.29255 1.71956 1.51744 1.47571 1.07799 1.05362 1.70594 1.22611 0.83729 1.01957 1.00183 1.22168 0.86268 0.92091 0.97192 0.88326 1.23379 1.01711 0.98334 0.96020 1.22088 0.94726 0.95836 0.85159 1.44596 1.79083 1.05036 1.04297 1.19126 1.38254 0.85950 0.91799 0.90402 1.24778 1.01715 0.98027 0.95968 1.69817 1.52800 1.27503 1.06872 0.86006 0.77396 0.83387 0.78748 1.20545 1.21772 1.21739 1.21623 0.97841 0.86699 0.93787 1.24287 0.83569 0.95470 0.99734 1.83722 1.16607 1.35641 1.71410 0.90044 0.90601 0.89134 0.80883 0.86820 0.92132 0.92506 0.92081 0.91058 0.96273 0.87571 0.93755 0.94737 0.95357 0.76764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.40 36.01 0.37 -0.13 16 2 C -0.02 -0.23 7.28 -35.74 -0.26 -0.49 16 3 C -0.20 -2.49 8.76 -37.46 -0.33 -2.82 16 4 C -0.23 -3.36 6.17 -103.27 -0.64 -4.00 16 5 C 0.58 10.31 7.67 -12.54 -0.10 10.21 16 6 O -0.56 -11.11 16.35 5.26 0.09 -11.03 16 7 N -0.58 -10.31 2.84 -173.12 -0.49 -10.80 16 8 C 0.06 0.93 6.98 59.85 0.42 1.35 16 9 C 0.13 2.41 3.53 -66.10 -0.23 2.17 16 10 H 0.10 1.88 7.10 -51.92 -0.37 1.51 16 11 C -0.15 -3.05 6.68 -24.58 -0.16 -3.22 16 12 C 0.15 3.41 5.01 -2.51 -0.01 3.40 16 13 N -0.60 -14.80 2.85 -170.04 -0.49 -15.29 16 14 C -0.22 -6.00 10.27 -15.06 -0.15 -6.15 16 15 H 0.08 2.05 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 17 N -0.92 -25.90 10.09 55.49 0.56 -25.34 16 18 Si 0.91 21.50 29.55 -169.99 -5.02 16.47 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C 0.13 2.66 6.17 -3.06 -0.02 2.64 16 23 C 0.04 0.49 11.91 30.07 0.36 0.85 16 24 O -0.18 -2.11 10.52 7.67 0.08 -2.03 16 25 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.17 2.00 4.60 -52.49 -0.24 1.76 16 29 H 0.11 2.21 4.23 -51.93 -0.22 1.99 16 30 H 0.06 0.87 6.14 -51.93 -0.32 0.55 16 31 H 0.06 0.83 6.83 -51.93 -0.35 0.47 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 34 H 0.02 0.46 5.92 -51.93 -0.31 0.15 16 35 H 0.11 2.83 5.88 -51.93 -0.31 2.53 16 36 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.03 0.60 7.72 -51.93 -0.40 0.20 16 39 H 0.22 2.11 8.06 -52.48 -0.42 1.69 16 LS Contribution 311.30 15.07 4.69 4.69 Total: -1.00 -31.24 311.30 -6.45 -37.69 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.02 Total: 2.17 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -0.85 Total: 3.46 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.42 Total: -51.43 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.17 Total: -13.06 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.24 -6.45 -37.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033031483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.389 kcal (2) G-P(sol) polarization free energy of solvation -31.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds