Wall clock time and date at job start Tue Mar 31 2020 00:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34167 * 125.43817 * 2 1 4 4 C 1.47022 * 105.95390 * 179.97438 * 3 2 1 5 5 C 1.47385 * 127.18857 * 179.97438 * 4 3 2 6 6 O 1.21615 * 119.99466 * 173.19386 * 5 4 3 7 7 N 1.34773 * 120.00440 * 353.19981 * 5 4 3 8 8 C 1.46500 * 119.99968 * 4.10017 * 7 5 4 9 9 C 1.46495 * 120.00272 * 184.10142 * 7 5 4 10 10 H 1.09008 * 110.77886 * 10.11488 * 9 7 5 11 11 C 1.55160 * 110.72200 * 246.87851 * 9 7 5 12 12 C 1.54903 * 101.61386 * 277.11811 * 11 9 7 13 13 N 1.47470 * 104.81217 * 323.04112 * 12 11 9 14 14 C 1.36938 * 125.63234 * 204.05278 * 13 12 11 15 15 H 1.07998 * 120.00572 * 180.02562 * 14 13 12 16 16 C 1.38820 * 119.99929 * 0.02562 * 14 13 12 17 17 N 1.31624 * 119.99411 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00238 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47116 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47141 * 119.99950 * 18 16 14 21 21 H 1.48503 * 109.46938 * 240.00317 * 18 16 14 22 22 C 1.47024 * 108.72253 * 24.07320 * 13 12 11 23 23 C 1.36410 * 105.61452 * 0.22774 * 4 3 2 24 24 O 1.33648 * 108.39648 * 359.63112 * 23 4 3 25 25 H 1.09001 * 109.46846 * 90.00029 * 1 2 3 26 26 H 1.09001 * 109.47103 * 209.99622 * 1 2 3 27 27 H 1.08995 * 109.47458 * 330.00399 * 1 2 3 28 28 H 1.08000 * 127.02394 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47383 * 183.96333 * 8 7 5 30 30 H 1.09004 * 109.47048 * 303.96637 * 8 7 5 31 31 H 1.09001 * 109.47068 * 63.96105 * 8 7 5 32 32 H 1.08996 * 111.00259 * 35.20907 * 11 9 7 33 33 H 1.09002 * 111.00255 * 159.02718 * 11 9 7 34 34 H 1.08994 * 110.37180 * 81.84911 * 12 11 9 35 35 H 1.09004 * 110.36994 * 204.17149 * 12 11 9 36 36 H 0.96999 * 119.99073 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.87923 * 239.55399 * 22 13 12 38 38 H 1.08996 * 109.88497 * 118.39086 * 22 13 12 39 39 H 1.08004 * 125.79936 * 179.74901 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6027 0.0006 5 6 4.9025 1.4125 0.0003 6 8 5.9850 0.8727 0.1258 7 7 4.8289 2.7510 -0.1388 8 6 3.5221 3.4104 -0.1995 9 6 6.0556 3.5466 -0.2293 10 1 6.9268 2.9020 -0.3475 11 6 6.2121 4.4580 1.0166 12 6 5.3220 5.6663 0.6328 13 7 5.5289 5.8417 -0.8167 14 6 5.3449 7.0060 -1.5136 15 1 5.5235 7.0321 -2.5784 16 6 4.9288 8.1530 -0.8515 17 7 4.7117 8.1214 0.4463 18 14 4.6771 9.7411 -1.8022 19 1 4.9855 9.5133 -3.2369 20 1 3.2661 10.1826 -1.6638 21 1 5.5793 10.7897 -1.2620 22 6 5.9649 4.5599 -1.3897 23 6 3.5789 -0.7583 -0.0043 24 8 2.2852 -1.0935 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5137 28 1 1.9595 2.1229 -0.0004 29 1 3.6609 4.4759 -0.3829 30 1 2.9332 2.9763 -1.0075 31 1 2.9998 3.2696 0.7468 32 1 5.8352 3.9638 1.9119 33 1 7.2500 4.7638 1.1490 34 1 4.2749 5.4479 0.8425 35 1 5.6397 6.5583 1.1728 36 1 4.4213 8.9229 0.9090 37 1 6.9424 4.6764 -1.8576 38 1 5.2380 4.2164 -2.1257 39 1 4.4103 -1.4477 -0.0091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033031483.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:43 Heat of formation + Delta-G solvation = 11.938190 kcal Electronic energy + Delta-G solvation = -22073.069057 eV Core-core repulsion = 18790.542484 eV Total energy + Delta-G solvation = -3282.526574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.56747 -41.12509 -38.98572 -36.11984 -34.53072 -33.56826 -32.76149 -31.07197 -29.55406 -28.18528 -27.33086 -26.37904 -24.58209 -22.60085 -21.96708 -21.02903 -19.75126 -18.93540 -18.41598 -17.87529 -17.31959 -17.07410 -16.70543 -16.27881 -15.70068 -15.58868 -14.72838 -14.48920 -14.37952 -14.00613 -13.93178 -13.79977 -13.71570 -13.59813 -13.39276 -12.96409 -12.85379 -12.77907 -12.53122 -12.43792 -11.97640 -11.91380 -11.78354 -11.44903 -10.99089 -10.79233 -10.69464 -9.78848 -9.42683 -8.88614 -7.75712 -5.20254 0.34760 1.05524 1.49470 1.50552 1.60290 1.82788 2.02209 2.25577 2.51019 3.35389 3.46174 3.65271 3.74347 3.85772 3.99193 4.00794 4.23303 4.29010 4.39846 4.49237 4.56459 4.62316 4.66169 4.76928 4.81538 4.86095 4.90192 4.92625 5.00303 5.10436 5.13781 5.42462 5.48166 5.56269 5.62966 5.82084 6.04896 6.31068 6.38637 7.06382 7.12142 7.77277 8.41362 9.25901 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.024910 B = 0.004437 C = 0.003996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.757106 B = 6308.483827 C = 7004.876145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.012 4.012 3 C -0.215 4.215 4 C -0.261 4.261 5 C 0.583 3.417 6 O -0.586 6.586 7 N -0.587 5.587 8 C 0.067 3.933 9 C 0.137 3.863 10 H 0.102 0.898 11 C -0.142 4.142 12 C 0.155 3.845 13 N -0.618 5.618 14 C -0.237 4.237 15 H 0.079 0.921 16 C -0.059 4.059 17 N -0.945 5.945 18 Si 0.977 3.023 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.294 1.294 22 C 0.130 3.870 23 C 0.054 3.946 24 O -0.177 6.177 25 H 0.096 0.904 26 H 0.089 0.911 27 H 0.104 0.896 28 H 0.180 0.820 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.247 0.753 37 H 0.037 0.963 38 H 0.030 0.970 39 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.477 -16.088 -0.162 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.061 4.061 3 C -0.233 4.233 4 C -0.266 4.266 5 C 0.375 3.625 6 O -0.469 6.469 7 N -0.317 5.317 8 C -0.075 4.075 9 C 0.033 3.967 10 H 0.120 0.880 11 C -0.181 4.181 12 C 0.031 3.969 13 N -0.345 5.345 14 C -0.365 4.365 15 H 0.097 0.903 16 C -0.252 4.252 17 N -0.595 5.595 18 Si 0.806 3.194 19 H -0.194 1.194 20 H -0.218 1.218 21 H -0.221 1.221 22 C 0.004 3.996 23 C -0.017 4.017 24 O -0.072 6.072 25 H 0.114 0.886 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.197 0.803 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.030 0.970 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -8.124 -16.411 -0.096 18.312 hybrid contribution 0.270 1.346 -0.318 1.409 sum -7.854 -15.065 -0.414 16.994 Atomic orbital electron populations 1.20537 0.81913 1.05530 1.04979 1.23065 0.95633 0.83041 1.04313 1.23587 0.90051 1.01392 1.08301 1.21378 0.93752 0.94800 1.16640 1.17669 0.87855 0.81563 0.75396 1.90716 1.30612 1.72345 1.53220 1.47598 1.07679 1.05615 1.70795 1.22564 0.83398 0.99764 1.01773 1.21941 0.87320 0.91667 0.95791 0.88012 1.23231 1.01125 0.96960 0.96785 1.21836 0.94891 0.95739 0.84478 1.44765 1.79125 1.05673 1.04890 1.19434 1.37903 0.87017 0.92183 0.90265 1.25527 1.01993 1.00838 0.96842 1.70044 1.53565 1.27826 1.08072 0.85027 0.76829 0.79506 0.78033 1.19407 1.21816 1.22122 1.21663 0.97672 0.85823 0.94437 1.24681 0.84303 0.95067 0.97627 1.83772 1.16433 1.36020 1.71007 0.88570 0.89212 0.87755 0.80320 0.90038 0.90222 0.90980 0.90960 0.90714 0.97029 0.91010 0.94301 0.94482 0.95213 0.74737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 10.40 71.24 0.74 -0.04 16 2 C -0.01 -0.23 7.28 24.76 0.18 -0.05 16 3 C -0.21 -4.97 8.76 23.65 0.21 -4.76 16 4 C -0.26 -7.29 6.17 -18.99 -0.12 -7.41 16 5 C 0.58 20.08 7.67 86.65 0.66 20.75 16 6 O -0.59 -23.04 16.35 -4.08 -0.07 -23.11 16 7 N -0.59 -20.36 2.84 -819.87 -2.33 -22.69 16 8 C 0.07 2.12 6.98 127.77 0.89 3.01 16 9 C 0.14 5.17 3.53 46.18 0.16 5.33 16 10 H 0.10 3.82 7.10 -2.38 -0.02 3.81 16 11 C -0.14 -5.56 6.68 31.99 0.21 -5.34 16 12 C 0.16 7.36 5.01 86.84 0.44 7.80 16 13 N -0.62 -30.65 2.85 -691.88 -1.97 -32.63 16 14 C -0.24 -12.81 10.27 84.04 0.86 -11.95 16 15 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 16 C -0.06 -3.23 5.49 84.86 0.47 -2.77 16 17 N -0.95 -54.21 10.09 21.65 0.22 -53.99 16 18 Si 0.98 44.40 29.55 68.60 2.03 46.43 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 C 0.13 5.43 6.17 86.73 0.54 5.97 16 23 C 0.05 1.23 11.91 67.39 0.80 2.03 16 24 O -0.18 -3.73 10.52 4.52 0.05 -3.68 16 25 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.18 3.79 4.60 -2.91 -0.01 3.77 16 29 H 0.08 3.18 4.23 -2.39 -0.01 3.17 16 30 H 0.08 2.19 6.14 -2.39 -0.01 2.18 16 31 H 0.07 2.03 6.83 -2.39 -0.02 2.02 16 32 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 34 H 0.01 0.58 5.92 -2.39 -0.01 0.56 16 35 H 0.07 3.95 5.88 -2.38 -0.01 3.93 16 36 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 37 H 0.04 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.03 1.24 7.72 -2.39 -0.02 1.22 16 39 H 0.24 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -67.04 311.30 5.04 -62.00 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.07 Total: 15.10 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.05 Total: 12.56 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -4.09 Total: -109.31 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.02 Total: -26.79 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.04 5.04 -62.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033031483.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.943 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds