Wall clock time and date at job start Tue Mar 31 2020 00:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34179 * 125.43691 * 2 1 4 4 C 1.47027 * 105.95327 * 180.02562 * 3 2 1 5 5 C 1.47376 * 127.18958 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99558 * 170.34800 * 5 4 3 7 7 N 1.34777 * 120.00413 * 350.62700 * 5 4 3 8 8 C 1.46504 * 119.99786 * 359.86726 * 7 5 4 9 9 C 1.46497 * 120.00444 * 179.87798 * 7 5 4 10 10 H 1.09007 * 110.88367 * 356.11195 * 9 7 5 11 11 C 1.55150 * 111.00859 * 119.99372 * 9 7 5 12 12 C 1.54323 * 102.94563 * 153.57604 * 11 9 7 13 13 N 1.47030 * 107.26865 * 337.81165 * 12 11 9 14 14 C 1.36933 * 125.64434 * 178.89679 * 13 12 11 15 15 H 1.08007 * 119.99719 * 180.02562 * 14 13 12 16 16 C 1.38810 * 120.00517 * 0.02562 * 14 13 12 17 17 N 1.31623 * 119.99775 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46938 * 60.00496 * 18 16 14 20 20 H 1.48500 * 109.46986 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47195 * 300.00726 * 18 16 14 22 22 C 1.47420 * 108.69935 * 358.93685 * 13 12 11 23 23 C 1.36413 * 105.61525 * 0.22806 * 4 3 2 24 24 O 1.33658 * 108.39680 * 359.62828 * 23 4 3 25 25 H 1.09003 * 109.47409 * 89.99955 * 1 2 3 26 26 H 1.09002 * 109.47327 * 209.99916 * 1 2 3 27 27 H 1.09004 * 109.47332 * 329.99657 * 1 2 3 28 28 H 1.07996 * 127.02372 * 0.07112 * 3 2 1 29 29 H 1.09007 * 109.46433 * 83.92476 * 8 7 5 30 30 H 1.08996 * 109.47583 * 203.92282 * 8 7 5 31 31 H 1.09001 * 109.47165 * 323.92440 * 8 7 5 32 32 H 1.09006 * 110.72337 * 271.94104 * 11 9 7 33 33 H 1.08996 * 110.72256 * 35.21196 * 11 9 7 34 34 H 1.09004 * 109.88059 * 97.22188 * 12 11 9 35 35 H 1.08991 * 109.88492 * 218.23974 * 12 11 9 36 36 H 0.97000 * 119.99835 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.37054 * 265.28851 * 22 13 12 38 38 H 1.09003 * 110.36597 * 142.97086 * 22 13 12 39 39 H 1.07999 * 125.80413 * 179.77414 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9024 1.4125 -0.0014 6 8 5.9810 0.8790 0.1747 7 7 4.8327 2.7450 -0.1917 8 6 3.5331 3.3881 -0.4006 9 6 6.0565 3.5502 -0.1898 10 1 6.9257 2.9357 0.0453 11 6 6.2430 4.2820 -1.5451 12 6 7.0829 5.5175 -1.1582 13 7 6.8781 5.7520 0.2787 14 6 7.4659 6.7442 1.0171 15 1 7.2496 6.8328 2.0716 16 6 8.3396 7.6361 0.4105 17 7 8.6027 7.5284 -0.8747 18 14 9.1419 8.9890 1.4180 19 1 9.9478 8.3828 2.5080 20 1 10.0245 9.8012 0.5423 21 1 8.0910 9.8590 2.0045 22 6 5.9358 4.7416 0.7929 23 6 3.5790 -0.7582 -0.0062 24 8 2.2851 -1.0935 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.9595 2.1230 0.0011 29 1 3.0684 3.5900 0.5645 30 1 3.6737 4.3252 -0.9393 31 1 2.8902 2.7276 -0.9824 32 1 6.7848 3.6532 -2.2516 33 1 5.2797 4.5840 -1.9560 34 1 8.1376 5.3253 -1.3557 35 1 6.7511 6.3848 -1.7288 36 1 9.2130 8.1518 -1.2987 37 1 4.9190 5.1345 0.7896 38 1 6.2212 4.4340 1.7989 39 1 4.4102 -1.4476 -0.0116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033031485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:49 Heat of formation + Delta-G solvation = 27.868375 kcal Electronic energy + Delta-G solvation = -21655.617101 eV Core-core repulsion = 18373.781312 eV Total energy + Delta-G solvation = -3281.835789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.74392 -39.63994 -37.26406 -34.97778 -33.35405 -32.31810 -31.72681 -29.20370 -27.70824 -27.18942 -26.46823 -24.69736 -23.21891 -21.52385 -20.10837 -19.77917 -18.72734 -17.41084 -16.94739 -16.69688 -16.46573 -15.76421 -14.90675 -14.63231 -14.28420 -14.10754 -13.57426 -13.49337 -13.37010 -13.32648 -12.96191 -12.73922 -12.40495 -12.14729 -12.05385 -11.72998 -11.35055 -10.94862 -10.85474 -10.77095 -10.28562 -10.12552 -9.90822 -9.80302 -9.72958 -9.65453 -8.78406 -8.60925 -8.29413 -6.84074 -5.70663 -3.05020 1.30842 1.85594 2.64863 3.17219 3.41120 3.42310 3.46174 3.47530 4.29229 4.51442 4.66224 4.77430 4.96318 5.10894 5.14334 5.23178 5.33520 5.37388 5.44404 5.51646 5.57251 5.65443 5.73232 5.76319 5.86398 5.90217 6.13007 6.22069 6.31756 6.51305 6.59399 6.71008 6.83422 7.00368 7.54832 7.59476 7.63186 7.82509 8.24737 8.35305 9.21689 9.81611 10.46838 11.40830 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040626 B = 0.003525 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.051763 B = 7940.663344 C = 8117.197363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.202 4.202 4 C -0.230 4.230 5 C 0.585 3.415 6 O -0.548 6.548 7 N -0.590 5.590 8 C 0.061 3.939 9 C 0.123 3.877 10 H 0.107 0.893 11 C -0.153 4.153 12 C 0.180 3.820 13 N -0.603 5.603 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.007 4.007 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.132 3.868 23 C 0.043 3.957 24 O -0.177 6.177 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.090 0.910 28 H 0.174 0.826 29 H 0.058 0.942 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.045 0.955 36 H 0.253 0.747 37 H 0.022 0.978 38 H 0.041 0.959 39 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.071 -14.148 -0.839 22.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.221 4.221 4 C -0.234 4.234 5 C 0.374 3.626 6 O -0.427 6.427 7 N -0.321 5.321 8 C -0.081 4.081 9 C 0.019 3.981 10 H 0.125 0.875 11 C -0.192 4.192 12 C 0.055 3.945 13 N -0.330 5.330 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.203 4.203 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.005 3.995 23 C -0.027 4.027 24 O -0.073 6.073 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.191 0.809 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -16.469 -14.489 -0.791 21.950 hybrid contribution 0.562 1.014 0.454 1.245 sum -15.907 -13.474 -0.337 20.850 Atomic orbital electron populations 1.20328 0.84832 1.04213 1.03642 1.22392 0.94141 0.83937 1.06128 1.23403 0.90822 1.00224 1.07630 1.21469 0.93953 0.94069 1.13926 1.17275 0.87171 0.81645 0.76531 1.90782 1.29478 1.71667 1.50787 1.47565 1.08117 1.06261 1.70183 1.22414 0.84930 0.99431 1.01357 1.22491 0.86278 0.92017 0.97291 0.87485 1.23252 1.00783 0.99131 0.96025 1.21142 0.97061 0.91774 0.84551 1.44377 1.50872 1.32175 1.05546 1.19014 1.20203 1.04405 0.92175 0.90425 1.24811 0.99862 0.99512 0.96163 1.69951 1.39193 1.38808 1.08997 0.86171 0.79029 0.81527 0.78856 1.21114 1.21576 1.21163 1.21739 0.93858 0.88449 0.95471 1.24336 0.83537 0.95522 0.99324 1.83741 1.16641 1.35585 1.71317 0.89994 0.90501 0.89158 0.80913 0.92395 0.90320 0.89926 0.91873 0.92119 0.93298 0.93656 0.93653 0.96033 0.94078 0.76654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.40 36.00 0.37 -0.02 16 2 C -0.02 -0.16 7.28 -35.74 -0.26 -0.42 16 3 C -0.20 -2.11 8.76 -37.45 -0.33 -2.44 16 4 C -0.23 -3.05 6.09 -103.28 -0.63 -3.68 16 5 C 0.58 9.79 7.67 -12.54 -0.10 9.70 16 6 O -0.55 -10.98 16.32 5.27 0.09 -10.89 16 7 N -0.59 -9.55 2.91 -172.77 -0.50 -10.05 16 8 C 0.06 0.75 7.32 59.85 0.44 1.19 16 9 C 0.12 2.38 3.44 -65.79 -0.23 2.15 16 10 H 0.11 2.31 7.02 -51.93 -0.36 1.95 16 11 C -0.15 -2.97 6.49 -24.90 -0.16 -3.13 16 12 C 0.18 4.43 5.37 -3.06 -0.02 4.41 16 13 N -0.60 -15.70 3.39 -170.07 -0.58 -16.27 16 14 C -0.23 -6.50 10.28 -15.06 -0.15 -6.65 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -27.27 10.31 55.49 0.57 -26.70 16 18 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.13 2.83 6.79 -2.53 -0.02 2.82 16 23 C 0.04 0.49 11.92 30.07 0.36 0.85 16 24 O -0.18 -1.88 10.52 7.64 0.08 -1.80 16 25 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.17 1.46 4.89 -52.49 -0.26 1.20 16 29 H 0.06 0.64 7.68 -51.93 -0.40 0.24 16 30 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 31 H 0.08 0.83 4.81 -51.93 -0.25 0.58 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.07 6.47 -51.93 -0.34 0.73 16 34 H 0.05 1.34 7.38 -51.93 -0.38 0.95 16 35 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 36 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.02 0.44 6.94 -51.93 -0.36 0.08 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.22 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -33.83 315.57 -6.57 -40.41 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.15 Total: -1.17 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.81 Total: 4.47 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.51 Total: -53.02 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.17 Total: -12.70 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.83 -6.57 -40.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033031485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.276 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds