Wall clock time and date at job start Tue Mar 31 2020 00:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.34179 * 125.43691 * 2 1 4 4 C 1.47027 * 105.95327 * 180.02562 * 3 2 1 5 5 C 1.47376 * 127.18958 * 179.97438 * 4 3 2 6 6 O 1.21613 * 119.99558 * 170.34800 * 5 4 3 7 7 N 1.34777 * 120.00413 * 350.62700 * 5 4 3 8 8 C 1.46504 * 119.99786 * 359.86726 * 7 5 4 9 9 C 1.46497 * 120.00444 * 179.87798 * 7 5 4 10 10 H 1.09007 * 110.88367 * 356.11195 * 9 7 5 11 11 C 1.55150 * 111.00859 * 119.99372 * 9 7 5 12 12 C 1.54323 * 102.94563 * 153.57604 * 11 9 7 13 13 N 1.47030 * 107.26865 * 337.81165 * 12 11 9 14 14 C 1.36933 * 125.64434 * 178.89679 * 13 12 11 15 15 H 1.08007 * 119.99719 * 180.02562 * 14 13 12 16 16 C 1.38810 * 120.00517 * 0.02562 * 14 13 12 17 17 N 1.31623 * 119.99775 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00125 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.46938 * 60.00496 * 18 16 14 20 20 H 1.48500 * 109.46986 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47195 * 300.00726 * 18 16 14 22 22 C 1.47420 * 108.69935 * 358.93685 * 13 12 11 23 23 C 1.36413 * 105.61525 * 0.22806 * 4 3 2 24 24 O 1.33658 * 108.39680 * 359.62828 * 23 4 3 25 25 H 1.09003 * 109.47409 * 89.99955 * 1 2 3 26 26 H 1.09002 * 109.47327 * 209.99916 * 1 2 3 27 27 H 1.09004 * 109.47332 * 329.99657 * 1 2 3 28 28 H 1.07996 * 127.02372 * 0.07112 * 3 2 1 29 29 H 1.09007 * 109.46433 * 83.92476 * 8 7 5 30 30 H 1.08996 * 109.47583 * 203.92282 * 8 7 5 31 31 H 1.09001 * 109.47165 * 323.92440 * 8 7 5 32 32 H 1.09006 * 110.72337 * 271.94104 * 11 9 7 33 33 H 1.08996 * 110.72256 * 35.21196 * 11 9 7 34 34 H 1.09004 * 109.88059 * 97.22188 * 12 11 9 35 35 H 1.08991 * 109.88492 * 218.23974 * 12 11 9 36 36 H 0.97000 * 119.99835 * 179.97438 * 17 16 14 37 37 H 1.09006 * 110.37054 * 265.28851 * 22 13 12 38 38 H 1.09003 * 110.36597 * 142.97086 * 22 13 12 39 39 H 1.07999 * 125.80413 * 179.77414 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9024 1.4125 -0.0014 6 8 5.9810 0.8790 0.1747 7 7 4.8327 2.7450 -0.1917 8 6 3.5331 3.3881 -0.4006 9 6 6.0565 3.5502 -0.1898 10 1 6.9257 2.9357 0.0453 11 6 6.2430 4.2820 -1.5451 12 6 7.0829 5.5175 -1.1582 13 7 6.8781 5.7520 0.2787 14 6 7.4659 6.7442 1.0171 15 1 7.2496 6.8328 2.0716 16 6 8.3396 7.6361 0.4105 17 7 8.6027 7.5284 -0.8747 18 14 9.1419 8.9890 1.4180 19 1 9.9478 8.3828 2.5080 20 1 10.0245 9.8012 0.5423 21 1 8.0910 9.8590 2.0045 22 6 5.9358 4.7416 0.7929 23 6 3.5790 -0.7582 -0.0062 24 8 2.2851 -1.0935 -0.0005 25 1 -0.3634 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.9595 2.1230 0.0011 29 1 3.0684 3.5900 0.5645 30 1 3.6737 4.3252 -0.9393 31 1 2.8902 2.7276 -0.9824 32 1 6.7848 3.6532 -2.2516 33 1 5.2797 4.5840 -1.9560 34 1 8.1376 5.3253 -1.3557 35 1 6.7511 6.3848 -1.7288 36 1 9.2130 8.1518 -1.2987 37 1 4.9190 5.1345 0.7896 38 1 6.2212 4.4340 1.7989 39 1 4.4102 -1.4476 -0.0116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033031485.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:48 Heat of formation + Delta-G solvation = 5.780323 kcal Electronic energy + Delta-G solvation = -21656.574911 eV Core-core repulsion = 18373.781312 eV Total energy + Delta-G solvation = -3282.793599 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = -0.36 seconds Orbital eigenvalues (eV) -43.56884 -41.00350 -38.94220 -36.43465 -34.55375 -33.66472 -32.78296 -31.08682 -29.26506 -28.30622 -27.28038 -26.58650 -24.52177 -22.44731 -22.06555 -21.20047 -19.76629 -18.96283 -18.47753 -17.84420 -17.30612 -17.03774 -16.66539 -16.13351 -15.91253 -15.42893 -14.90396 -14.39305 -14.27870 -14.17653 -14.05989 -13.96950 -13.84094 -13.68288 -13.61275 -12.94614 -12.73167 -12.70312 -12.39663 -12.30427 -12.09165 -12.08311 -11.81747 -11.51218 -11.10680 -10.75677 -10.72866 -9.79296 -9.42883 -8.93638 -7.86805 -5.24143 0.34977 1.06645 1.45834 1.49767 1.55920 1.79446 2.00825 2.24648 2.49988 3.31621 3.46640 3.63717 3.71191 3.88855 3.97328 4.00884 4.16342 4.22370 4.37372 4.49873 4.53663 4.61126 4.62933 4.77564 4.80450 4.83123 4.88528 4.93519 4.98472 5.10480 5.14929 5.40875 5.45403 5.53288 5.59489 5.70325 6.05632 6.15847 6.37490 7.05851 7.07786 7.72287 8.36468 9.23231 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.040626 B = 0.003525 C = 0.003449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.051763 B = 7940.663344 C = 8117.197363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.210 4.210 4 C -0.258 4.258 5 C 0.581 3.419 6 O -0.593 6.593 7 N -0.590 5.590 8 C 0.055 3.945 9 C 0.138 3.862 10 H 0.079 0.921 11 C -0.134 4.134 12 C 0.189 3.811 13 N -0.625 5.625 14 C -0.248 4.248 15 H 0.083 0.917 16 C -0.064 4.064 17 N -0.951 5.951 18 Si 0.982 3.018 19 H -0.279 1.279 20 H -0.293 1.293 21 H -0.273 1.273 22 C 0.134 3.866 23 C 0.049 3.951 24 O -0.179 6.179 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.194 0.806 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.110 0.890 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.010 0.990 35 H 0.019 0.981 36 H 0.248 0.752 37 H 0.044 0.956 38 H 0.033 0.967 39 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.918 -14.646 -0.408 24.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.228 4.228 4 C -0.262 4.262 5 C 0.372 3.628 6 O -0.476 6.476 7 N -0.320 5.320 8 C -0.086 4.086 9 C 0.033 3.967 10 H 0.097 0.903 11 C -0.173 4.173 12 C 0.064 3.936 13 N -0.352 5.352 14 C -0.377 4.377 15 H 0.101 0.899 16 C -0.257 4.257 17 N -0.599 5.599 18 Si 0.810 3.190 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.199 1.199 22 C 0.008 3.992 23 C -0.021 4.021 24 O -0.074 6.074 25 H 0.116 0.884 26 H 0.104 0.896 27 H 0.127 0.873 28 H 0.210 0.790 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.028 0.972 35 H 0.037 0.963 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.052 0.948 39 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -19.384 -15.001 -0.347 24.513 hybrid contribution 1.371 1.090 0.342 1.785 sum -18.013 -13.911 -0.005 22.759 Atomic orbital electron populations 1.20557 0.81801 1.05592 1.05064 1.23151 0.95695 0.83087 1.04039 1.23565 0.89264 1.01604 1.08408 1.21313 0.93770 0.94582 1.16567 1.17783 0.87803 0.81746 0.75431 1.90751 1.31445 1.72477 1.52878 1.47551 1.08293 1.06115 1.70012 1.22726 0.83298 0.99662 1.02875 1.21984 0.87240 0.91201 0.96307 0.90293 1.23059 1.01170 0.96736 0.96307 1.20868 0.95716 0.92964 0.84053 1.44654 1.51603 1.32747 1.06150 1.19424 1.20419 1.05055 0.92788 0.89918 1.25691 1.00678 1.01991 0.97314 1.70173 1.39694 1.39514 1.10523 0.85102 0.78050 0.78575 0.77280 1.20511 1.21895 1.19896 1.21836 0.93746 0.88220 0.95396 1.24627 0.84301 0.95297 0.97895 1.83785 1.16353 1.36309 1.70994 0.88418 0.89629 0.87291 0.78953 0.90637 0.90446 0.87236 0.90980 0.89426 0.97185 0.96328 0.94234 0.93800 0.94846 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.40 71.23 0.74 0.26 16 2 C -0.01 -0.17 7.28 24.76 0.18 0.01 16 3 C -0.21 -3.73 8.76 23.65 0.21 -3.52 16 4 C -0.26 -6.43 6.09 -18.99 -0.12 -6.55 16 5 C 0.58 19.15 7.67 86.65 0.66 19.81 16 6 O -0.59 -24.26 16.32 -4.07 -0.07 -24.33 16 7 N -0.59 -18.35 2.91 -818.76 -2.38 -20.73 16 8 C 0.06 1.19 7.32 127.77 0.94 2.13 16 9 C 0.14 5.34 3.44 46.38 0.16 5.50 16 10 H 0.08 3.53 7.02 -2.38 -0.02 3.51 16 11 C -0.13 -5.17 6.49 31.78 0.21 -4.96 16 12 C 0.19 9.62 5.37 86.73 0.47 10.09 16 13 N -0.62 -33.12 3.39 -691.99 -2.35 -35.47 16 14 C -0.25 -14.24 10.28 84.03 0.86 -13.38 16 15 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 16 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 17 N -0.95 -57.92 10.31 21.65 0.22 -57.69 16 18 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 C 0.13 5.74 6.79 86.85 0.59 6.33 16 23 C 0.05 1.05 11.92 67.39 0.80 1.85 16 24 O -0.18 -3.36 10.52 4.43 0.05 -3.32 16 25 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 0.34 8.14 -2.38 -0.02 0.33 16 28 H 0.19 2.46 4.89 -2.91 -0.01 2.45 16 29 H 0.08 1.39 7.68 -2.38 -0.02 1.37 16 30 H 0.08 1.72 6.36 -2.39 -0.02 1.70 16 31 H 0.11 1.81 4.81 -2.39 -0.01 1.80 16 32 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 33 H 0.09 2.92 6.47 -2.39 -0.02 2.91 16 34 H 0.01 0.57 7.38 -2.38 -0.02 0.55 16 35 H 0.02 1.03 7.50 -2.39 -0.02 1.01 16 36 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.04 1.71 6.94 -2.38 -0.02 1.69 16 38 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.23 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -75.77 315.57 4.73 -71.05 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.06 Total: 7.84 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.17 Total: 14.36 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -4.51 Total: -113.90 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.02 Total: -27.64 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -75.77 4.73 -71.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033031485.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.826 kcal (2) G-P(sol) polarization free energy of solvation -75.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.36 seconds