Wall clock time and date at job start Tue Mar 31 2020 01:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35132 * 126.43964 * 2 1 4 4 O 1.33933 * 108.76451 * 179.83072 * 3 2 1 5 5 C 1.34922 * 109.38149 * 0.44232 * 4 3 2 6 6 C 1.46657 * 125.98356 * 179.73160 * 5 4 3 7 7 O 1.21692 * 119.99982 * 173.16768 * 6 5 4 8 8 N 1.34782 * 120.00145 * 353.16035 * 6 5 4 9 9 C 1.46494 * 119.99882 * 3.95569 * 8 6 5 10 10 C 1.46503 * 119.99848 * 183.94725 * 8 6 5 11 11 H 1.08998 * 110.64314 * 358.31786 * 10 8 6 12 12 C 1.55159 * 110.71905 * 234.97875 * 10 8 6 13 13 C 1.54905 * 101.58009 * 277.14159 * 12 10 8 14 14 N 1.47430 * 104.83392 * 322.99029 * 13 12 10 15 15 C 1.36932 * 125.64676 * 204.09202 * 14 13 12 16 16 H 1.08004 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00487 * 0.04902 * 15 14 13 18 18 N 1.31622 * 119.99908 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47204 * 89.99776 * 19 17 15 21 21 H 1.48503 * 109.47389 * 209.99442 * 19 17 15 22 22 H 1.48500 * 109.47086 * 329.99684 * 19 17 15 23 23 C 1.47024 * 108.69996 * 24.12952 * 14 13 12 24 24 C 1.36543 * 108.02615 * 359.73249 * 5 4 3 25 25 H 1.08994 * 109.46560 * 269.68857 * 1 2 3 26 26 H 1.08998 * 109.46837 * 149.69085 * 1 2 3 27 27 H 1.08999 * 109.46946 * 29.69098 * 1 2 3 28 28 H 1.07994 * 125.62046 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47678 * 84.18439 * 9 8 6 30 30 H 1.09002 * 109.46683 * 204.19300 * 9 8 6 31 31 H 1.09008 * 109.47001 * 324.18658 * 9 8 6 32 32 H 1.09001 * 111.00238 * 35.21725 * 12 10 8 33 33 H 1.09001 * 110.99745 * 159.06712 * 12 10 8 34 34 H 1.09002 * 110.36388 * 204.15285 * 13 12 10 35 35 H 1.09000 * 110.46226 * 81.87941 * 13 12 10 36 36 H 0.97000 * 120.00164 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.88031 * 239.52302 * 23 14 13 38 38 H 1.09006 * 109.87532 * 118.35606 * 23 14 13 39 39 H 1.07994 * 126.64436 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0037 5 6 3.6261 -0.6681 -0.0036 6 6 4.8379 -1.4941 -0.0081 7 8 4.7514 -2.7021 0.1107 8 7 6.0475 -0.9152 -0.1439 9 6 6.1589 0.5444 -0.1999 10 6 7.2509 -1.7457 -0.2353 11 1 6.9964 -2.8019 -0.1475 12 6 8.2850 -1.3346 0.8459 13 6 8.9835 -0.1305 0.1662 14 7 9.0607 -0.4950 -1.2603 15 6 9.9666 -0.0032 -2.1617 16 1 9.9401 -0.3344 -3.1893 17 6 10.9193 0.9207 -1.7547 18 7 10.9516 1.3244 -0.5023 19 14 12.1554 1.5910 -2.9842 20 1 11.6046 2.8127 -3.6240 21 1 13.4199 1.9274 -2.2818 22 1 12.4246 0.5660 -4.0245 23 6 8.0034 -1.4732 -1.5547 24 6 2.3408 -1.1292 -0.0062 25 1 -0.3632 -0.0056 1.0276 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8927 -0.5090 28 1 1.9771 2.1146 0.0004 29 1 6.1823 0.9463 0.8130 30 1 7.0759 0.8191 -0.7212 31 1 5.3011 0.9540 -0.7335 32 1 7.7874 -1.0290 1.7663 33 1 8.9933 -2.1411 1.0357 34 1 9.9836 0.0091 0.5767 35 1 8.3916 0.7757 0.2947 36 1 11.6171 1.9702 -0.2180 37 1 8.4464 -2.3972 -1.9265 38 1 7.3163 -1.0646 -2.2958 39 1 2.0267 -2.1624 -0.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033346593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:09 Heat of formation + Delta-G solvation = 23.708524 kcal Electronic energy + Delta-G solvation = -22051.954202 eV Core-core repulsion = 18769.938029 eV Total energy + Delta-G solvation = -3282.016174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.77435 -39.69093 -37.45313 -34.75136 -34.04056 -32.15675 -30.56174 -29.24975 -28.13614 -27.31574 -26.17853 -24.57465 -23.15010 -21.12470 -20.36736 -20.06720 -18.84036 -17.37068 -16.94281 -16.72029 -16.39316 -15.82291 -14.82103 -14.66740 -14.18190 -13.87136 -13.65292 -13.38545 -13.26149 -12.99935 -12.81518 -12.64024 -12.23947 -11.92399 -11.88844 -11.62217 -11.58674 -11.08834 -10.90987 -10.84023 -10.42860 -10.14339 -9.89683 -9.79604 -9.72262 -9.55750 -8.72993 -8.65973 -8.27411 -6.88467 -5.69288 -3.11511 1.08719 2.22437 2.69222 3.24228 3.32789 3.37953 3.43476 3.45110 4.45817 4.51036 4.65046 4.82066 5.11829 5.38760 5.39457 5.42039 5.43474 5.52102 5.58808 5.66366 5.68802 5.79363 5.81244 5.90444 5.95091 6.27301 6.29171 6.32004 6.37331 6.54965 6.56911 6.68802 6.79113 7.03243 7.43081 7.58283 7.60933 7.81570 8.21716 8.31537 9.17695 9.78077 10.42312 11.34236 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.004152 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.706150 B = 6742.400964 C = 7175.952533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.196 4.196 3 C -0.021 4.021 4 O -0.151 6.151 5 C -0.062 4.062 6 C 0.594 3.406 7 O -0.533 6.533 8 N -0.581 5.581 9 C 0.063 3.937 10 C 0.124 3.876 11 H 0.102 0.898 12 C -0.154 4.154 13 C 0.143 3.857 14 N -0.603 5.603 15 C -0.223 4.223 16 H 0.077 0.923 17 C -0.010 4.010 18 N -0.922 5.922 19 Si 0.915 3.085 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.127 3.873 24 C -0.127 4.127 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.206 0.794 29 H 0.055 0.945 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.023 0.977 36 H 0.252 0.748 37 H 0.036 0.964 38 H 0.028 0.972 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.275 -0.320 2.753 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.197 4.197 3 C -0.091 4.091 4 O -0.046 6.046 5 C -0.114 4.114 6 C 0.382 3.618 7 O -0.413 6.413 8 N -0.311 5.311 9 C -0.079 4.079 10 C 0.021 3.979 11 H 0.120 0.880 12 C -0.193 4.193 13 C 0.018 3.982 14 N -0.330 5.330 15 C -0.351 4.351 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.000 4.000 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.073 0.927 30 H 0.128 0.872 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.125 0.875 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -16.813 -0.622 2.794 17.055 hybrid contribution 0.386 0.520 -0.626 0.900 sum -16.428 -0.102 2.168 16.571 Atomic orbital electron populations 1.20161 0.88854 1.02686 1.02156 1.20449 0.97526 0.92479 1.09292 1.24272 0.80798 0.99990 1.04031 1.84398 1.28329 1.21764 1.70124 1.22159 0.96143 0.80560 1.12536 1.16738 0.81307 0.86211 0.77557 1.90830 1.85732 1.12753 1.51980 1.47761 1.05628 1.08181 1.69508 1.22386 1.04908 0.78281 1.02366 1.22253 0.83380 0.94885 0.97358 0.87963 1.23354 0.97357 1.01712 0.96900 1.22159 1.01623 0.90999 0.83384 1.44553 1.33663 1.48048 1.06722 1.19074 1.06534 1.18790 0.90729 0.90470 1.24774 0.99501 0.99596 0.96649 1.69794 1.37266 1.35470 1.14494 0.86070 0.80677 0.78821 0.79904 1.21650 1.21669 1.20712 1.21652 0.90745 0.93852 0.93769 1.21778 0.90546 1.00396 1.02011 0.91414 0.91413 0.91577 0.77774 0.92653 0.87160 0.90961 0.91938 0.90778 0.87540 0.95923 0.93708 0.94657 0.95450 0.82513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.01 0.37 -0.22 16 2 C -0.20 -2.08 6.14 -104.92 -0.64 -2.73 16 3 C -0.02 -0.22 12.00 29.63 0.36 0.14 16 4 O -0.15 -2.03 7.27 4.97 0.04 -1.99 16 5 C -0.06 -0.94 6.77 -36.80 -0.25 -1.19 16 6 C 0.59 10.50 7.64 -12.86 -0.10 10.40 16 7 O -0.53 -10.52 16.25 5.20 0.08 -10.44 16 8 N -0.58 -10.35 2.82 -173.38 -0.49 -10.84 16 9 C 0.06 1.06 7.91 59.84 0.47 1.53 16 10 C 0.12 2.35 3.58 -66.10 -0.24 2.11 16 11 H 0.10 1.91 6.99 -51.93 -0.36 1.54 16 12 C -0.15 -2.96 6.53 -24.58 -0.16 -3.12 16 13 C 0.14 3.32 4.99 -2.53 -0.01 3.30 16 14 N -0.60 -14.94 2.97 -170.07 -0.51 -15.44 16 15 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 16 H 0.08 2.05 7.83 -52.48 -0.41 1.63 16 17 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.02 10.09 55.49 0.56 -25.46 16 19 Si 0.91 21.67 29.55 -169.99 -5.02 16.65 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.13 2.68 6.30 -3.07 -0.02 2.66 16 24 C -0.13 -1.66 10.58 -39.40 -0.42 -2.08 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.21 1.25 8.06 -52.49 -0.42 0.83 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 2.20 4.76 -51.93 -0.25 1.95 16 31 H 0.07 1.12 5.35 -51.92 -0.28 0.84 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.11 2.83 5.87 -51.93 -0.31 2.52 16 35 H 0.02 0.54 5.54 -51.93 -0.29 0.25 16 36 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.03 0.59 8.04 -51.93 -0.42 0.17 16 39 H 0.16 1.92 8.06 -52.49 -0.42 1.50 16 LS Contribution 314.68 15.07 4.74 4.74 Total: -1.00 -30.64 314.68 -6.73 -37.38 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -5.25 Total: 1.17 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -0.89 Total: 4.24 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.44 Total: -51.74 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.12 Total: -12.43 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.64 -6.73 -37.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033346593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.084 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds