Wall clock time and date at job start Tue Mar 31 2020 01:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35132 * 126.43964 * 2 1 4 4 O 1.33933 * 108.76451 * 179.83072 * 3 2 1 5 5 C 1.34922 * 109.38149 * 0.44232 * 4 3 2 6 6 C 1.46657 * 125.98356 * 179.73160 * 5 4 3 7 7 O 1.21692 * 119.99982 * 173.16768 * 6 5 4 8 8 N 1.34782 * 120.00145 * 353.16035 * 6 5 4 9 9 C 1.46494 * 119.99882 * 3.95569 * 8 6 5 10 10 C 1.46503 * 119.99848 * 183.94725 * 8 6 5 11 11 H 1.08998 * 110.64314 * 358.31786 * 10 8 6 12 12 C 1.55159 * 110.71905 * 234.97875 * 10 8 6 13 13 C 1.54905 * 101.58009 * 277.14159 * 12 10 8 14 14 N 1.47430 * 104.83392 * 322.99029 * 13 12 10 15 15 C 1.36932 * 125.64676 * 204.09202 * 14 13 12 16 16 H 1.08004 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.38809 * 120.00487 * 0.04902 * 15 14 13 18 18 N 1.31622 * 119.99908 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00303 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47204 * 89.99776 * 19 17 15 21 21 H 1.48503 * 109.47389 * 209.99442 * 19 17 15 22 22 H 1.48500 * 109.47086 * 329.99684 * 19 17 15 23 23 C 1.47024 * 108.69996 * 24.12952 * 14 13 12 24 24 C 1.36543 * 108.02615 * 359.73249 * 5 4 3 25 25 H 1.08994 * 109.46560 * 269.68857 * 1 2 3 26 26 H 1.08998 * 109.46837 * 149.69085 * 1 2 3 27 27 H 1.08999 * 109.46946 * 29.69098 * 1 2 3 28 28 H 1.07994 * 125.62046 * 0.02562 * 3 2 1 29 29 H 1.08997 * 109.47678 * 84.18439 * 9 8 6 30 30 H 1.09002 * 109.46683 * 204.19300 * 9 8 6 31 31 H 1.09008 * 109.47001 * 324.18658 * 9 8 6 32 32 H 1.09001 * 111.00238 * 35.21725 * 12 10 8 33 33 H 1.09001 * 110.99745 * 159.06712 * 12 10 8 34 34 H 1.09002 * 110.36388 * 204.15285 * 13 12 10 35 35 H 1.09000 * 110.46226 * 81.87941 * 13 12 10 36 36 H 0.97000 * 120.00164 * 180.02562 * 18 17 15 37 37 H 1.08997 * 109.88031 * 239.52302 * 23 14 13 38 38 H 1.09006 * 109.87532 * 118.35606 * 23 14 13 39 39 H 1.07994 * 126.64436 * 179.97438 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5858 0.6805 0.0037 5 6 3.6261 -0.6681 -0.0036 6 6 4.8379 -1.4941 -0.0081 7 8 4.7514 -2.7021 0.1107 8 7 6.0475 -0.9152 -0.1439 9 6 6.1589 0.5444 -0.1999 10 6 7.2509 -1.7457 -0.2353 11 1 6.9964 -2.8019 -0.1475 12 6 8.2850 -1.3346 0.8459 13 6 8.9835 -0.1305 0.1662 14 7 9.0607 -0.4950 -1.2603 15 6 9.9666 -0.0032 -2.1617 16 1 9.9401 -0.3344 -3.1893 17 6 10.9193 0.9207 -1.7547 18 7 10.9516 1.3244 -0.5023 19 14 12.1554 1.5910 -2.9842 20 1 11.6046 2.8127 -3.6240 21 1 13.4199 1.9274 -2.2818 22 1 12.4246 0.5660 -4.0245 23 6 8.0034 -1.4732 -1.5547 24 6 2.3408 -1.1292 -0.0062 25 1 -0.3632 -0.0056 1.0276 26 1 -0.3633 -0.8872 -0.5186 27 1 -0.3633 0.8927 -0.5090 28 1 1.9771 2.1146 0.0004 29 1 6.1823 0.9463 0.8130 30 1 7.0759 0.8191 -0.7212 31 1 5.3011 0.9540 -0.7335 32 1 7.7874 -1.0290 1.7663 33 1 8.9933 -2.1411 1.0357 34 1 9.9836 0.0091 0.5767 35 1 8.3916 0.7757 0.2947 36 1 11.6171 1.9702 -0.2180 37 1 8.4464 -2.3972 -1.9265 38 1 7.3163 -1.0646 -2.2958 39 1 2.0267 -2.1624 -0.0123 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033346593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:06 Heat of formation + Delta-G solvation = 5.520606 kcal Electronic energy + Delta-G solvation = -22052.742890 eV Core-core repulsion = 18769.938029 eV Total energy + Delta-G solvation = -3282.804861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -43.73896 -41.13698 -39.06080 -36.18629 -35.10174 -33.99044 -31.71536 -30.94776 -29.72129 -28.11671 -27.70893 -26.36541 -24.45963 -22.12019 -22.08790 -21.50357 -20.16529 -18.97708 -18.40418 -18.02856 -17.50187 -17.07749 -16.71313 -16.07139 -15.72036 -15.61349 -14.66213 -14.50821 -14.27604 -14.03892 -13.93133 -13.90026 -13.75841 -13.58430 -13.35573 -13.05892 -12.93648 -12.78078 -12.53724 -12.44319 -12.05923 -11.99055 -11.82931 -11.44333 -11.21991 -10.71973 -10.68422 -9.86668 -9.49568 -8.88457 -7.76108 -5.20557 0.01446 1.34654 1.49018 1.49811 1.58485 1.59022 2.00619 2.10669 2.50461 3.34342 3.41561 3.68535 3.82488 3.83884 3.95828 4.06290 4.21635 4.23353 4.38237 4.56872 4.61691 4.63900 4.68244 4.80437 4.86990 4.90752 4.96988 5.00165 5.05896 5.08144 5.16056 5.40215 5.49328 5.55615 5.63779 5.81930 5.90876 6.24527 6.31547 6.86224 7.11806 7.77009 8.40982 9.25136 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.030371 B = 0.004152 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.706150 B = 6742.400964 C = 7175.952533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.204 4.204 3 C -0.003 4.003 4 O -0.163 6.163 5 C -0.101 4.101 6 C 0.595 3.405 7 O -0.562 6.562 8 N -0.586 5.586 9 C 0.075 3.925 10 C 0.135 3.865 11 H 0.109 0.891 12 C -0.139 4.139 13 C 0.149 3.851 14 N -0.619 5.619 15 C -0.239 4.239 16 H 0.078 0.922 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.978 3.022 20 H -0.286 1.286 21 H -0.294 1.294 22 H -0.273 1.273 23 C 0.128 3.872 24 C -0.120 4.120 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.249 0.751 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.015 0.985 36 H 0.248 0.752 37 H 0.038 0.962 38 H 0.023 0.977 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.347 0.406 2.590 19.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.205 4.205 3 C -0.072 4.072 4 O -0.059 6.059 5 C -0.152 4.152 6 C 0.385 3.615 7 O -0.444 6.444 8 N -0.315 5.315 9 C -0.067 4.067 10 C 0.032 3.968 11 H 0.127 0.873 12 C -0.178 4.178 13 C 0.025 3.975 14 N -0.346 5.346 15 C -0.368 4.368 16 H 0.095 0.905 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.807 3.193 20 H -0.213 1.213 21 H -0.220 1.220 22 H -0.198 1.198 23 C 0.002 3.998 24 C -0.141 4.141 25 H 0.096 0.904 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.265 0.735 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.033 0.967 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.910 0.094 2.626 19.091 hybrid contribution 0.886 0.331 -0.584 1.111 sum -18.024 0.425 2.042 18.144 Atomic orbital electron populations 1.20255 0.86333 1.03889 1.03173 1.20838 0.99197 0.91446 1.09038 1.25214 0.79365 1.01822 1.00846 1.84332 1.30178 1.20856 1.70549 1.21691 0.95478 0.81390 1.16675 1.17002 0.81755 0.86211 0.76539 1.90797 1.86270 1.14002 1.53341 1.47760 1.05520 1.08314 1.69934 1.22227 1.03914 0.77905 1.02608 1.22035 0.83650 0.95447 0.95703 0.87338 1.23205 0.97266 1.00083 0.97259 1.21939 0.99991 0.92482 0.83079 1.44744 1.34114 1.48589 1.07107 1.19385 1.07128 1.18961 0.91315 0.90452 1.25537 1.01253 1.00140 0.98337 1.70026 1.37677 1.35759 1.15890 0.85085 0.78124 0.78173 0.77941 1.21345 1.22017 1.19826 1.21704 0.90071 0.93001 0.95023 1.22060 0.90425 1.01458 1.00133 0.90404 0.91198 0.89493 0.73477 0.91828 0.90313 0.89417 0.90308 0.90186 0.90906 0.96689 0.94262 0.94361 0.95882 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.39 71.24 0.74 -0.13 16 2 C -0.20 -3.71 6.14 -20.06 -0.12 -3.83 16 3 C 0.00 -0.06 12.00 67.10 0.81 0.75 16 4 O -0.16 -4.06 7.27 -5.14 -0.04 -4.10 16 5 C -0.10 -2.95 6.77 24.07 0.16 -2.79 16 6 C 0.59 20.85 7.64 86.44 0.66 21.51 16 7 O -0.56 -22.17 16.25 -4.32 -0.07 -22.25 16 8 N -0.59 -20.75 2.82 -820.68 -2.32 -23.06 16 9 C 0.08 2.53 7.91 127.77 1.01 3.54 16 10 C 0.14 5.10 3.58 46.18 0.17 5.26 16 11 H 0.11 4.00 6.99 -2.39 -0.02 3.99 16 12 C -0.14 -5.32 6.53 31.99 0.21 -5.11 16 13 C 0.15 7.10 4.99 86.85 0.43 7.53 16 14 N -0.62 -31.21 2.97 -691.99 -2.06 -33.27 16 15 C -0.24 -13.17 10.27 84.03 0.86 -12.31 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 17 C -0.06 -3.30 5.49 84.86 0.47 -2.84 16 18 N -0.94 -54.45 10.09 21.65 0.22 -54.23 16 19 Si 0.98 44.91 29.55 68.60 2.03 46.94 16 20 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 21 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 C 0.13 5.48 6.30 86.73 0.55 6.02 16 24 C -0.12 -2.96 10.58 22.39 0.24 -2.73 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.71 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.25 1.76 8.06 -2.91 -0.02 1.74 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 3.19 4.76 -2.39 -0.01 3.18 16 31 H 0.09 2.65 5.35 -2.38 -0.01 2.64 16 32 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 34 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16 35 H 0.02 0.74 5.54 -2.39 -0.01 0.73 16 36 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.02 1.01 8.04 -2.38 -0.02 0.99 16 39 H 0.16 3.74 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -67.01 314.68 5.00 -62.01 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 1.06 Total: 13.08 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 6.18 Total: 14.88 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.16 Total: -110.57 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.11 Total: -26.34 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -67.01 5.00 -62.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033346593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.535 kcal (2) G-P(sol) polarization free energy of solvation -67.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds