Wall clock time and date at job start Tue Mar 31 2020 00:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34176 * 125.43943 * 2 1 4 4 C 1.47019 * 105.95733 * 179.97438 * 3 2 1 5 5 C 1.47374 * 127.19593 * 180.02562 * 4 3 2 6 6 O 1.21615 * 120.00332 * 179.97438 * 5 4 3 7 7 N 1.34784 * 120.00000 * 0.02562 * 5 4 3 8 8 C 1.46490 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47070 * 179.97438 * 8 7 5 10 10 H 1.09001 * 112.73828 * 56.24371 * 9 8 7 11 11 C 1.53501 * 113.46972 * 187.05865 * 9 8 7 12 12 C 1.53491 * 83.34582 * 140.84887 * 11 9 8 13 13 N 1.47064 * 87.98664 * 333.93514 * 12 11 9 14 14 C 1.36936 * 136.05835 * 207.15283 * 13 12 11 15 15 H 1.07998 * 120.00028 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00049 * 359.95122 * 14 13 12 17 17 N 1.31621 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47161 * 119.99890 * 18 16 14 21 21 H 1.48496 * 109.46658 * 239.99681 * 18 16 14 22 22 C 1.36415 * 105.61440 * 0.02562 * 4 3 2 23 23 C 1.50704 * 125.80226 * 179.73582 * 22 4 3 24 24 O 1.33653 * 108.40033 * 359.97438 * 22 4 3 25 25 H 1.09003 * 109.47691 * 89.99627 * 1 2 3 26 26 H 1.09008 * 109.46878 * 209.99439 * 1 2 3 27 27 H 1.09000 * 109.47386 * 329.98966 * 1 2 3 28 28 H 1.08000 * 127.01939 * 359.96403 * 3 2 1 29 29 H 0.97006 * 119.99602 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47595 * 300.00024 * 8 7 5 31 31 H 1.09004 * 109.47278 * 59.99530 * 8 7 5 32 32 H 1.09000 * 114.20974 * 254.44255 * 11 9 8 33 33 H 1.09000 * 114.20594 * 27.26233 * 11 9 8 34 34 H 1.08996 * 113.47194 * 219.15287 * 12 11 9 35 35 H 1.09002 * 113.46506 * 88.71256 * 12 11 9 36 36 H 0.96995 * 120.00292 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.47117 * 89.99664 * 23 22 4 38 38 H 1.08999 * 109.47154 * 210.00162 * 23 22 4 39 39 H 1.09001 * 109.47293 * 330.00293 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6028 0.0006 5 6 4.9024 1.4124 0.0014 6 8 5.9891 0.8665 0.0023 7 7 4.8243 2.7580 0.0021 8 6 6.0483 3.5628 0.0034 9 6 5.6820 5.0483 0.0034 10 1 5.0380 5.3234 0.8386 11 6 6.8925 5.9764 -0.1683 12 6 5.9249 6.7818 -1.0465 13 7 5.1931 5.5310 -1.2970 14 6 4.4043 5.0340 -2.2999 15 1 3.9819 4.0437 -2.2144 16 6 4.1471 5.8033 -3.4264 17 7 4.6610 7.0106 -3.5303 18 14 3.0704 5.1257 -4.7943 19 1 2.6193 3.7568 -4.4370 20 1 1.8880 6.0055 -4.9755 21 1 3.8486 5.0759 -6.0580 22 6 3.5789 -0.7582 0.0004 23 6 4.7389 -1.7202 -0.0048 24 8 2.2852 -1.0936 0.0002 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5140 28 1 1.9594 2.1229 -0.0005 29 1 3.9575 3.1935 0.0017 30 1 6.6336 3.3326 0.8937 31 1 6.6349 3.3335 -0.8863 32 1 7.1974 6.4869 0.7452 33 1 7.7243 5.5300 -0.7132 34 1 6.3923 7.1974 -1.9391 35 1 5.3460 7.5195 -0.4907 36 1 4.4810 7.5483 -4.3172 37 1 5.0229 -1.9526 1.0216 38 1 4.4484 -2.6370 -0.5179 39 1 5.5847 -1.2669 -0.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038048929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:41 Heat of formation + Delta-G solvation = 26.336015 kcal Electronic energy + Delta-G solvation = -21653.987537 eV Core-core repulsion = 18372.085300 eV Total energy + Delta-G solvation = -3281.902237 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.54662 -39.17386 -37.99480 -34.09749 -33.08210 -32.82791 -32.20623 -29.62756 -28.08435 -27.62799 -25.08458 -23.47844 -23.14359 -21.86452 -20.60402 -19.63869 -18.99505 -17.22914 -16.55461 -16.46251 -15.62520 -15.44176 -15.21608 -14.42534 -14.29773 -13.84517 -13.60072 -13.46024 -13.41537 -13.02918 -12.85280 -12.81327 -12.66576 -12.42419 -11.89528 -11.56189 -11.53248 -11.11871 -10.98636 -10.78744 -10.55724 -9.99663 -9.82746 -9.68267 -9.66192 -9.21522 -8.82698 -8.57605 -8.29325 -6.90742 -5.78031 -3.10475 1.46748 2.07247 2.71912 3.36560 3.42759 3.44749 3.61026 3.70966 4.42385 4.45824 4.82711 4.96525 5.13373 5.19923 5.30384 5.31899 5.39836 5.44505 5.49089 5.56387 5.61751 5.69246 5.79698 5.92033 5.96235 6.11958 6.18963 6.32211 6.38894 6.41402 6.59745 6.73061 6.93309 7.09133 7.22533 7.39009 7.57501 7.96655 7.97416 8.61637 9.02336 9.69280 10.61960 11.39275 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.005590 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.882534 B = 5007.816114 C = 6158.718719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.020 4.020 3 C -0.181 4.181 4 C -0.234 4.234 5 C 0.585 3.415 6 O -0.555 6.555 7 N -0.705 5.705 8 C 0.123 3.877 9 C 0.127 3.873 10 H 0.048 0.952 11 C -0.160 4.160 12 C 0.151 3.849 13 N -0.601 5.601 14 C -0.213 4.213 15 H 0.081 0.919 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.067 3.933 23 C -0.078 4.078 24 O -0.178 6.178 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.403 0.597 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.252 0.748 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.363 -12.033 9.500 15.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.239 4.239 5 C 0.373 3.627 6 O -0.436 6.436 7 N -0.354 5.354 8 C -0.002 4.002 9 C 0.019 3.981 10 H 0.065 0.935 11 C -0.199 4.199 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.340 4.340 15 H 0.099 0.901 16 C -0.204 4.204 17 N -0.565 5.565 18 Si 0.737 3.263 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.015 3.985 23 C -0.134 4.134 24 O -0.075 6.075 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.108 0.892 28 H 0.175 0.825 29 H 0.238 0.762 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.093 0.907 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.889 -12.663 9.160 16.105 hybrid contribution -1.201 0.294 -0.822 1.485 sum -5.090 -12.369 8.338 15.761 Atomic orbital electron populations 1.20312 0.84798 1.03992 1.03686 1.22181 0.93908 0.83702 1.06980 1.22672 0.90897 0.99681 1.06768 1.21239 0.94065 0.93309 1.15270 1.17178 0.87130 0.82133 0.76257 1.90704 1.28778 1.72067 1.52041 1.45760 1.10845 1.05279 1.73479 1.21813 0.86165 0.90859 1.01347 1.22426 0.94055 0.90925 0.90723 0.93470 1.23657 0.97015 0.99353 0.99924 1.22029 0.89632 0.89535 0.96246 1.45682 1.58443 1.14195 1.14401 1.18914 1.22285 0.98548 0.94239 0.90124 1.24765 1.00949 0.96337 0.98338 1.69835 1.48046 1.09619 1.29035 0.86118 0.79890 0.77942 0.82306 1.20456 1.21766 1.21707 1.22723 0.82801 0.94077 0.98926 1.20571 0.92269 0.96458 1.04121 1.83664 1.16207 1.35632 1.71999 0.90011 0.90658 0.89160 0.82494 0.76240 0.92206 0.91027 0.92329 0.90176 0.90974 0.95746 0.93745 0.89614 0.90723 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.40 36.00 0.37 -0.23 16 2 C -0.02 -0.25 7.28 -35.74 -0.26 -0.51 16 3 C -0.18 -2.60 10.48 -37.46 -0.39 -2.99 16 4 C -0.23 -3.84 6.31 -103.28 -0.65 -4.49 16 5 C 0.59 10.82 7.81 -12.54 -0.10 10.72 16 6 O -0.55 -11.25 14.85 5.26 0.08 -11.18 16 7 N -0.70 -12.78 5.33 -61.40 -0.33 -13.11 16 8 C 0.12 2.28 5.52 -4.05 -0.02 2.26 16 9 C 0.13 2.46 4.10 -72.39 -0.30 2.16 16 10 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 11 C -0.16 -2.93 8.03 -26.22 -0.21 -3.14 16 12 C 0.15 3.47 7.39 -8.51 -0.06 3.40 16 13 N -0.60 -14.71 3.65 -177.00 -0.65 -15.35 16 14 C -0.21 -5.74 10.55 -15.06 -0.16 -5.89 16 15 H 0.08 2.12 7.50 -52.49 -0.39 1.72 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 17 N -0.92 -27.02 11.51 55.49 0.64 -26.38 16 18 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C 0.07 0.99 7.37 -34.96 -0.26 0.73 16 23 C -0.08 -0.93 9.88 36.01 0.36 -0.57 16 24 O -0.18 -2.47 10.52 7.63 0.08 -2.39 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.16 2.04 7.74 -52.49 -0.41 1.63 16 29 H 0.40 7.05 7.55 -40.82 -0.31 6.74 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 34 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.11 1.49 6.50 -51.93 -0.34 1.15 16 LS Contribution 331.64 15.07 5.00 5.00 Total: -1.00 -32.61 331.64 -7.58 -40.19 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.60 Total: 4.95 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -1.78 Total: 1.15 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.33 Total: -54.84 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.16 Total: -13.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.61 -7.58 -40.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038048929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.524 kcal (2) G-P(sol) polarization free energy of solvation -32.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds