Wall clock time and date at job start Tue Mar 31 2020 00:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34176 * 125.43943 * 2 1 4 4 C 1.47019 * 105.95733 * 179.97438 * 3 2 1 5 5 C 1.47374 * 127.19593 * 180.02562 * 4 3 2 6 6 O 1.21615 * 120.00332 * 179.97438 * 5 4 3 7 7 N 1.34784 * 120.00000 * 0.02562 * 5 4 3 8 8 C 1.46490 * 120.00193 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47070 * 179.97438 * 8 7 5 10 10 H 1.09001 * 112.73828 * 56.24371 * 9 8 7 11 11 C 1.53501 * 113.46972 * 187.05865 * 9 8 7 12 12 C 1.53491 * 83.34582 * 140.84887 * 11 9 8 13 13 N 1.47064 * 87.98664 * 333.93514 * 12 11 9 14 14 C 1.36936 * 136.05835 * 207.15283 * 13 12 11 15 15 H 1.07998 * 120.00028 * 179.97438 * 14 13 12 16 16 C 1.38812 * 120.00049 * 359.95122 * 14 13 12 17 17 N 1.31621 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47001 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47161 * 119.99890 * 18 16 14 21 21 H 1.48496 * 109.46658 * 239.99681 * 18 16 14 22 22 C 1.36415 * 105.61440 * 0.02562 * 4 3 2 23 23 C 1.50704 * 125.80226 * 179.73582 * 22 4 3 24 24 O 1.33653 * 108.40033 * 359.97438 * 22 4 3 25 25 H 1.09003 * 109.47691 * 89.99627 * 1 2 3 26 26 H 1.09008 * 109.46878 * 209.99439 * 1 2 3 27 27 H 1.09000 * 109.47386 * 329.98966 * 1 2 3 28 28 H 1.08000 * 127.01939 * 359.96403 * 3 2 1 29 29 H 0.97006 * 119.99602 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.47595 * 300.00024 * 8 7 5 31 31 H 1.09004 * 109.47278 * 59.99530 * 8 7 5 32 32 H 1.09000 * 114.20974 * 254.44255 * 11 9 8 33 33 H 1.09000 * 114.20594 * 27.26233 * 11 9 8 34 34 H 1.08996 * 113.47194 * 219.15287 * 12 11 9 35 35 H 1.09002 * 113.46506 * 88.71256 * 12 11 9 36 36 H 0.96995 * 120.00292 * 180.02562 * 17 16 14 37 37 H 1.09007 * 109.47117 * 89.99664 * 23 22 4 38 38 H 1.08999 * 109.47154 * 210.00162 * 23 22 4 39 39 H 1.09001 * 109.47293 * 330.00293 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2849 1.0932 0.0000 4 6 3.6709 0.6028 0.0006 5 6 4.9024 1.4124 0.0014 6 8 5.9891 0.8665 0.0023 7 7 4.8243 2.7580 0.0021 8 6 6.0483 3.5628 0.0034 9 6 5.6820 5.0483 0.0034 10 1 5.0380 5.3234 0.8386 11 6 6.8925 5.9764 -0.1683 12 6 5.9249 6.7818 -1.0465 13 7 5.1931 5.5310 -1.2970 14 6 4.4043 5.0340 -2.2999 15 1 3.9819 4.0437 -2.2144 16 6 4.1471 5.8033 -3.4264 17 7 4.6610 7.0106 -3.5303 18 14 3.0704 5.1257 -4.7943 19 1 2.6193 3.7568 -4.4370 20 1 1.8880 6.0055 -4.9755 21 1 3.8486 5.0759 -6.0580 22 6 3.5789 -0.7582 0.0004 23 6 4.7389 -1.7202 -0.0048 24 8 2.2852 -1.0936 0.0002 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8899 0.5140 28 1 1.9594 2.1229 -0.0005 29 1 3.9575 3.1935 0.0017 30 1 6.6336 3.3326 0.8937 31 1 6.6349 3.3335 -0.8863 32 1 7.1974 6.4869 0.7452 33 1 7.7243 5.5300 -0.7132 34 1 6.3923 7.1974 -1.9391 35 1 5.3460 7.5195 -0.4907 36 1 4.4810 7.5483 -4.3172 37 1 5.0229 -1.9526 1.0216 38 1 4.4484 -2.6370 -0.5179 39 1 5.5847 -1.2669 -0.5219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038048929.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:38 Heat of formation + Delta-G solvation = 5.052348 kcal Electronic energy + Delta-G solvation = -21654.910466 eV Core-core repulsion = 18372.085300 eV Total energy + Delta-G solvation = -3282.825166 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -43.62332 -40.68180 -39.63264 -35.57879 -34.31719 -34.06023 -33.86066 -30.58179 -29.95689 -29.14683 -26.13358 -25.40140 -24.44238 -23.28322 -21.86219 -21.19498 -20.50814 -18.72243 -18.07924 -17.54446 -17.08991 -16.98847 -16.70764 -16.08563 -15.71536 -15.51764 -15.00177 -14.72825 -14.42983 -14.21217 -14.10346 -13.83063 -13.62293 -13.48391 -13.33917 -13.24936 -13.00123 -12.71579 -12.59696 -12.50855 -12.30593 -11.85750 -11.62795 -11.27043 -10.91209 -10.84706 -10.81657 -10.02404 -9.37917 -8.89569 -7.88520 -5.19909 0.29600 0.99747 1.41477 1.43390 1.52013 1.69727 2.23328 2.34447 2.46527 3.33746 3.42861 3.49580 3.76116 3.81497 3.94057 4.14538 4.26385 4.34028 4.43390 4.53584 4.60429 4.63780 4.67451 4.70243 4.71416 4.86838 4.93364 5.01730 5.05717 5.09143 5.22032 5.32721 5.38070 5.47122 5.59115 5.74244 5.96886 6.01928 6.55060 6.93824 7.19304 7.63342 8.63216 9.29265 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.005590 C = 0.004545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.882534 B = 5007.816114 C = 6158.718719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.012 4.012 3 C -0.202 4.202 4 C -0.268 4.268 5 C 0.582 3.418 6 O -0.580 6.580 7 N -0.705 5.705 8 C 0.131 3.869 9 C 0.132 3.868 10 H 0.069 0.931 11 C -0.133 4.133 12 C 0.143 3.857 13 N -0.629 5.629 14 C -0.205 4.205 15 H 0.084 0.916 16 C -0.070 4.070 17 N -0.953 5.953 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.290 1.290 21 H -0.298 1.298 22 C 0.069 3.931 23 C -0.077 4.077 24 O -0.178 6.178 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.107 0.893 28 H 0.165 0.835 29 H 0.406 0.594 30 H 0.082 0.918 31 H 0.043 0.957 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.036 0.964 35 H 0.024 0.976 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 -13.578 10.865 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.221 4.221 4 C -0.272 4.272 5 C 0.371 3.629 6 O -0.463 6.463 7 N -0.354 5.354 8 C 0.007 3.993 9 C 0.026 3.974 10 H 0.086 0.914 11 C -0.171 4.171 12 C 0.017 3.983 13 N -0.355 5.355 14 C -0.333 4.333 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.795 3.205 19 H -0.193 1.193 20 H -0.217 1.217 21 H -0.226 1.226 22 C 0.015 3.985 23 C -0.132 4.132 24 O -0.075 6.075 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.182 0.818 29 H 0.241 0.759 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.023 -14.227 10.562 18.417 hybrid contribution -0.851 0.725 -1.172 1.620 sum -5.875 -13.501 9.390 17.463 Atomic orbital electron populations 1.20541 0.81601 1.05731 1.04871 1.22952 0.95539 0.82829 1.04650 1.22825 0.90257 1.00701 1.08330 1.21260 0.94132 0.94135 1.17708 1.17499 0.87633 0.82187 0.75540 1.90680 1.29875 1.72441 1.53267 1.45745 1.10750 1.05364 1.73518 1.21639 0.86311 0.90381 1.00985 1.22578 0.94396 0.91531 0.88907 0.91376 1.23477 0.95751 0.97525 1.00392 1.22052 0.90792 0.89627 0.95824 1.45996 1.58180 1.15348 1.15991 1.19210 1.20990 0.98406 0.94743 0.89860 1.25499 1.03042 0.96932 1.00752 1.70007 1.50017 1.10856 1.29395 0.85181 0.78160 0.77762 0.79361 1.19260 1.21747 1.22590 1.23157 0.83695 0.94059 0.97552 1.20631 0.90675 0.96738 1.05204 1.83702 1.15937 1.36076 1.71740 0.88933 0.88877 0.87491 0.81762 0.75931 0.90034 0.93861 0.88071 0.90212 0.94557 0.95866 0.94545 0.88019 0.88094 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.40 71.23 0.74 -0.24 16 2 C -0.01 -0.27 7.28 24.76 0.18 -0.09 16 3 C -0.20 -5.55 10.48 23.65 0.25 -5.30 16 4 C -0.27 -8.61 6.31 -18.99 -0.12 -8.73 16 5 C 0.58 21.38 7.81 86.65 0.68 22.06 16 6 O -0.58 -23.54 14.85 -4.08 -0.06 -23.60 16 7 N -0.70 -25.11 5.33 -466.43 -2.49 -27.60 16 8 C 0.13 4.74 5.52 86.38 0.48 5.22 16 9 C 0.13 4.91 4.10 41.79 0.17 5.09 16 10 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 11 C -0.13 -4.58 8.03 30.93 0.25 -4.33 16 12 C 0.14 6.54 7.39 83.18 0.61 7.16 16 13 N -0.63 -30.67 3.65 -713.90 -2.61 -33.28 16 14 C -0.21 -11.11 10.55 84.03 0.89 -10.23 16 15 H 0.08 4.36 7.50 -2.91 -0.02 4.34 16 16 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 17 N -0.95 -57.57 11.51 21.65 0.25 -57.32 16 18 Si 0.97 46.18 29.55 68.60 2.03 48.21 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 22 C 0.07 1.93 7.37 25.26 0.19 2.11 16 23 C -0.08 -1.71 9.88 71.24 0.70 -1.01 16 24 O -0.18 -4.57 10.52 4.40 0.05 -4.53 16 25 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.16 4.09 7.74 -2.91 -0.02 4.07 16 29 H 0.41 13.91 7.55 -92.70 -0.70 13.21 16 30 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 31 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.08 2.78 8.12 -2.39 -0.02 2.76 16 34 H 0.04 1.91 7.12 -2.39 -0.02 1.89 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 37 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 2.42 6.50 -2.39 -0.02 2.40 16 Total: -1.00 -71.57 331.64 3.01 -68.56 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.36 Total: 21.32 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 5.48 Total: 8.22 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -4.84 Total: -118.19 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.01 Total: -28.13 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -71.57 3.01 -68.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038048929.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.615 kcal (2) G-P(sol) polarization free energy of solvation -71.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds