Wall clock time and date at job start Tue Mar 31 2020 00:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34173 * 125.44003 * 2 1 4 4 C 1.47017 * 105.95738 * 180.02562 * 3 2 1 5 5 C 1.47375 * 127.19373 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99706 * 180.02562 * 5 4 3 7 7 N 1.34769 * 120.00162 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00443 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47668 * 179.97438 * 8 7 5 10 10 H 1.09003 * 112.96563 * 306.68303 * 9 8 7 11 11 C 1.53942 * 113.77155 * 174.99914 * 9 8 7 12 12 C 1.53947 * 86.28992 * 222.09460 * 11 9 8 13 13 N 1.47581 * 86.11784 * 23.60995 * 12 11 9 14 14 C 1.36935 * 134.49239 * 155.36214 * 13 12 11 15 15 H 1.08000 * 119.99734 * 187.05325 * 14 13 12 16 16 C 1.38808 * 119.99999 * 7.05167 * 14 13 12 17 17 N 1.31615 * 120.00419 * 7.61169 * 16 14 13 18 18 Si 1.86807 * 119.99792 * 187.61024 * 16 14 13 19 19 H 1.48505 * 109.46959 * 94.81153 * 18 16 14 20 20 H 1.48498 * 109.46854 * 214.81008 * 18 16 14 21 21 H 1.48491 * 109.47083 * 334.81289 * 18 16 14 22 22 C 1.36417 * 105.61344 * 0.22314 * 4 3 2 23 23 C 1.50693 * 125.80278 * 179.75932 * 22 4 3 24 24 O 1.33659 * 108.39590 * 359.63517 * 22 4 3 25 25 H 1.09004 * 109.47100 * 90.00196 * 1 2 3 26 26 H 1.08996 * 109.47071 * 210.00511 * 1 2 3 27 27 H 1.09007 * 109.46990 * 329.99982 * 1 2 3 28 28 H 1.08002 * 127.01787 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00419 * 0.02562 * 7 5 4 30 30 H 1.08996 * 109.46696 * 300.00643 * 8 7 5 31 31 H 1.09005 * 109.46681 * 59.99799 * 8 7 5 32 32 H 1.08999 * 113.74139 * 336.44384 * 11 9 8 33 33 H 1.08997 * 113.74196 * 107.64327 * 11 9 8 34 34 H 1.09009 * 113.76806 * 137.90978 * 12 11 9 35 35 H 1.08997 * 113.77000 * 269.19111 * 12 11 9 36 36 H 0.96995 * 120.00359 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47525 * 90.00143 * 23 22 4 38 38 H 1.09002 * 109.47401 * 210.00067 * 23 22 4 39 39 H 1.08997 * 109.47340 * 329.99727 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 5.9891 0.8664 -0.0023 7 7 4.8244 2.7579 -0.0011 8 6 6.0485 3.5628 -0.0024 9 6 5.6822 5.0482 -0.0023 10 1 4.9975 5.3175 -0.8066 11 6 6.8965 5.9867 0.1192 12 6 6.0375 6.8080 1.0977 13 7 5.2798 5.5615 1.3216 14 6 4.5118 5.0762 2.3462 15 1 4.1454 4.0608 2.3122 16 6 4.2042 5.8892 3.4283 17 7 4.5209 7.1665 3.4030 18 14 3.3406 5.1706 4.9208 19 1 4.3502 4.7903 5.9414 20 1 2.4158 6.1822 5.4923 21 1 2.5696 3.9681 4.5152 22 6 3.5790 -0.7582 -0.0061 23 6 4.7389 -1.7202 -0.0139 24 8 2.2851 -1.0935 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9595 2.1229 0.0004 29 1 3.9577 3.1934 0.0001 30 1 6.6354 3.3327 0.8868 31 1 6.6333 3.3331 -0.8932 32 1 7.7662 5.5212 0.5828 33 1 7.1380 6.5135 -0.8040 34 1 6.5822 7.1548 1.9760 35 1 5.4578 7.5966 0.6181 36 1 4.3056 7.7347 4.1590 37 1 5.0219 -1.9566 1.0118 38 1 4.4488 -2.6351 -0.5307 39 1 5.5850 -1.2650 -0.5286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038048930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:51 Heat of formation + Delta-G solvation = 22.047050 kcal Electronic energy + Delta-G solvation = -21606.375317 eV Core-core repulsion = 18324.287097 eV Total energy + Delta-G solvation = -3282.088221 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.55459 -39.14059 -37.83796 -34.11132 -33.08910 -32.83605 -32.17311 -29.63587 -28.04285 -27.64412 -25.10380 -23.36589 -23.20677 -21.96507 -20.62573 -19.63629 -18.90516 -17.22941 -16.51922 -16.46959 -15.64433 -15.44288 -15.23208 -14.43254 -14.31067 -13.82461 -13.59838 -13.49255 -13.43653 -13.03588 -12.88771 -12.80019 -12.69317 -12.43624 -11.86088 -11.57285 -11.39670 -11.14528 -11.04338 -10.76112 -10.51138 -10.06627 -9.75978 -9.69215 -9.66656 -9.34437 -8.76719 -8.59215 -8.30441 -6.89897 -5.78787 -3.09420 1.45930 2.06471 2.71323 3.37754 3.43822 3.44833 3.59659 3.69703 4.43241 4.45365 4.82170 4.95180 5.12515 5.14716 5.29034 5.30969 5.39484 5.43483 5.50331 5.60558 5.61411 5.68666 5.78458 5.92382 5.94953 6.10577 6.18003 6.30821 6.38463 6.40482 6.61592 6.73922 6.93046 7.08492 7.22204 7.40500 7.55763 7.95814 7.97450 8.60333 9.04137 9.70605 10.59934 11.39212 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.005452 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.422100 B = 5134.202795 C = 6232.136376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.019 4.019 3 C -0.181 4.181 4 C -0.235 4.235 5 C 0.586 3.414 6 O -0.555 6.555 7 N -0.705 5.705 8 C 0.125 3.875 9 C 0.124 3.876 10 H 0.049 0.951 11 C -0.156 4.156 12 C 0.166 3.834 13 N -0.601 5.601 14 C -0.220 4.220 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.905 3.095 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C 0.068 3.932 23 C -0.078 4.078 24 O -0.178 6.178 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.158 0.842 29 H 0.403 0.597 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.032 0.968 36 H 0.253 0.747 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.081 -12.381 -9.420 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.068 4.068 3 C -0.200 4.200 4 C -0.239 4.239 5 C 0.373 3.627 6 O -0.436 6.436 7 N -0.354 5.354 8 C 0.000 4.000 9 C 0.017 3.983 10 H 0.066 0.934 11 C -0.195 4.195 12 C 0.040 3.960 13 N -0.327 5.327 14 C -0.348 4.348 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.736 3.264 19 H -0.216 1.216 20 H -0.218 1.218 21 H -0.206 1.206 22 C 0.015 3.985 23 C -0.134 4.134 24 O -0.075 6.075 25 H 0.099 0.901 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.175 0.825 29 H 0.238 0.762 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.598 -12.985 -9.102 16.261 hybrid contribution -1.121 0.270 0.954 1.497 sum -4.719 -12.715 -8.148 15.822 Atomic orbital electron populations 1.20318 0.84792 1.04226 1.03476 1.22184 0.93911 0.83698 1.06972 1.22673 0.90890 0.99689 1.06760 1.21235 0.94062 0.93306 1.15314 1.17173 0.87134 0.82117 0.76251 1.90705 1.28784 1.72060 1.52016 1.45763 1.10847 1.05298 1.73522 1.21761 0.86146 0.90655 1.01412 1.22501 0.94598 0.91004 0.90233 0.93389 1.23765 0.97267 0.98832 0.99632 1.22061 0.89810 0.89278 0.94818 1.46172 1.58262 1.16754 1.11522 1.18982 1.24719 0.95611 0.95478 0.90313 1.24776 1.01132 0.95358 0.98995 1.69839 1.52188 1.03643 1.30865 0.86204 0.79023 0.77817 0.83353 1.21617 1.21762 1.20631 1.22724 0.82804 0.94076 0.98900 1.20569 0.92193 0.96371 1.04299 1.83663 1.16207 1.35642 1.71988 0.90128 0.90609 0.89069 0.82481 0.76238 0.90944 0.92097 0.90513 0.92687 0.92154 0.95039 0.93699 0.89513 0.90768 0.87268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.40 36.01 0.37 -0.23 16 2 C -0.02 -0.25 7.28 -35.74 -0.26 -0.51 16 3 C -0.18 -2.57 10.48 -37.46 -0.39 -2.96 16 4 C -0.23 -3.81 6.31 -103.28 -0.65 -4.46 16 5 C 0.59 10.72 7.81 -12.55 -0.10 10.62 16 6 O -0.55 -11.15 14.85 5.27 0.08 -11.08 16 7 N -0.71 -12.66 5.51 -61.40 -0.34 -13.00 16 8 C 0.12 2.30 5.54 -4.04 -0.02 2.28 16 9 C 0.12 2.41 4.33 -66.86 -0.29 2.12 16 10 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.16 -2.83 7.86 -25.81 -0.20 -3.04 16 12 C 0.17 3.80 7.31 -2.97 -0.02 3.78 16 13 N -0.60 -14.70 3.56 -170.74 -0.61 -15.31 16 14 C -0.22 -5.97 10.49 -15.06 -0.16 -6.13 16 15 H 0.08 2.09 7.80 -52.49 -0.41 1.68 16 16 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 17 N -0.92 -27.05 11.76 55.49 0.65 -26.40 16 18 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 C 0.07 0.99 7.37 -34.97 -0.26 0.73 16 23 C -0.08 -0.92 9.88 36.00 0.36 -0.56 16 24 O -0.18 -2.45 10.52 7.65 0.08 -2.37 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.16 2.02 7.74 -52.49 -0.41 1.61 16 29 H 0.40 6.97 7.64 -40.82 -0.31 6.66 16 30 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.36 8.10 -51.93 -0.42 0.94 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 1.52 7.69 -51.92 -0.40 1.12 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 1.42 6.49 -51.93 -0.34 1.08 16 LS Contribution 332.85 15.07 5.02 5.02 Total: -1.00 -32.69 332.85 -7.51 -40.20 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -5.65 Total: 4.34 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.72 Total: 1.37 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.29 Total: -54.71 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.16 Total: -13.45 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.69 -7.51 -40.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038048930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.245 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds