Wall clock time and date at job start Tue Mar 31 2020 00:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34173 * 125.44003 * 2 1 4 4 C 1.47017 * 105.95738 * 180.02562 * 3 2 1 5 5 C 1.47375 * 127.19373 * 179.97438 * 4 3 2 6 6 O 1.21612 * 119.99706 * 180.02562 * 5 4 3 7 7 N 1.34769 * 120.00162 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00443 * 180.02562 * 7 5 4 9 9 C 1.52995 * 109.47668 * 179.97438 * 8 7 5 10 10 H 1.09003 * 112.96563 * 306.68303 * 9 8 7 11 11 C 1.53942 * 113.77155 * 174.99914 * 9 8 7 12 12 C 1.53947 * 86.28992 * 222.09460 * 11 9 8 13 13 N 1.47581 * 86.11784 * 23.60995 * 12 11 9 14 14 C 1.36935 * 134.49239 * 155.36214 * 13 12 11 15 15 H 1.08000 * 119.99734 * 187.05325 * 14 13 12 16 16 C 1.38808 * 119.99999 * 7.05167 * 14 13 12 17 17 N 1.31615 * 120.00419 * 7.61169 * 16 14 13 18 18 Si 1.86807 * 119.99792 * 187.61024 * 16 14 13 19 19 H 1.48505 * 109.46959 * 94.81153 * 18 16 14 20 20 H 1.48498 * 109.46854 * 214.81008 * 18 16 14 21 21 H 1.48491 * 109.47083 * 334.81289 * 18 16 14 22 22 C 1.36417 * 105.61344 * 0.22314 * 4 3 2 23 23 C 1.50693 * 125.80278 * 179.75932 * 22 4 3 24 24 O 1.33659 * 108.39590 * 359.63517 * 22 4 3 25 25 H 1.09004 * 109.47100 * 90.00196 * 1 2 3 26 26 H 1.08996 * 109.47071 * 210.00511 * 1 2 3 27 27 H 1.09007 * 109.46990 * 329.99982 * 1 2 3 28 28 H 1.08002 * 127.01787 * 0.02562 * 3 2 1 29 29 H 0.96999 * 120.00419 * 0.02562 * 7 5 4 30 30 H 1.08996 * 109.46696 * 300.00643 * 8 7 5 31 31 H 1.09005 * 109.46681 * 59.99799 * 8 7 5 32 32 H 1.08999 * 113.74139 * 336.44384 * 11 9 8 33 33 H 1.08997 * 113.74196 * 107.64327 * 11 9 8 34 34 H 1.09009 * 113.76806 * 137.90978 * 12 11 9 35 35 H 1.08997 * 113.77000 * 269.19111 * 12 11 9 36 36 H 0.96995 * 120.00359 * 179.97438 * 17 16 14 37 37 H 1.09002 * 109.47525 * 90.00143 * 23 22 4 38 38 H 1.09002 * 109.47401 * 210.00067 * 23 22 4 39 39 H 1.08997 * 109.47340 * 329.99727 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2850 1.0931 0.0000 4 6 3.6710 0.6028 -0.0006 5 6 4.9025 1.4124 -0.0014 6 8 5.9891 0.8664 -0.0023 7 7 4.8244 2.7579 -0.0011 8 6 6.0485 3.5628 -0.0024 9 6 5.6822 5.0482 -0.0023 10 1 4.9975 5.3175 -0.8066 11 6 6.8965 5.9867 0.1192 12 6 6.0375 6.8080 1.0977 13 7 5.2798 5.5615 1.3216 14 6 4.5118 5.0762 2.3462 15 1 4.1454 4.0608 2.3122 16 6 4.2042 5.8892 3.4283 17 7 4.5209 7.1665 3.4030 18 14 3.3406 5.1706 4.9208 19 1 4.3502 4.7903 5.9414 20 1 2.4158 6.1822 5.4923 21 1 2.5696 3.9681 4.5152 22 6 3.5790 -0.7582 -0.0061 23 6 4.7389 -1.7202 -0.0139 24 8 2.2851 -1.0935 -0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.9595 2.1229 0.0004 29 1 3.9577 3.1934 0.0001 30 1 6.6354 3.3327 0.8868 31 1 6.6333 3.3331 -0.8932 32 1 7.7662 5.5212 0.5828 33 1 7.1380 6.5135 -0.8040 34 1 6.5822 7.1548 1.9760 35 1 5.4578 7.5966 0.6181 36 1 4.3056 7.7347 4.1590 37 1 5.0219 -1.9566 1.0118 38 1 4.4488 -2.6351 -0.5307 39 1 5.5850 -1.2650 -0.5286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038048930.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:44 Heat of formation + Delta-G solvation = 0.748953 kcal Electronic energy + Delta-G solvation = -21607.298872 eV Core-core repulsion = 18324.287097 eV Total energy + Delta-G solvation = -3283.011776 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -43.62302 -40.62039 -39.49523 -35.58669 -34.30075 -34.04832 -33.85977 -30.58586 -29.89453 -29.18652 -26.15062 -25.29870 -24.51677 -23.35814 -21.86622 -21.14103 -20.45366 -18.70414 -18.05878 -17.54472 -17.09974 -17.00677 -16.70188 -16.08261 -15.70154 -15.55459 -15.02070 -14.74351 -14.44470 -14.18455 -14.13639 -13.83019 -13.59923 -13.47124 -13.28171 -13.24057 -13.00692 -12.69629 -12.64038 -12.50792 -12.27029 -11.89057 -11.52909 -11.38474 -10.93989 -10.84289 -10.81002 -10.03307 -9.37830 -8.89580 -7.90313 -5.19895 0.29616 0.99913 1.40950 1.43465 1.50759 1.69930 2.22862 2.34461 2.46711 3.32019 3.36951 3.49279 3.76476 3.81812 3.98289 4.13424 4.26607 4.35070 4.43007 4.53879 4.59829 4.63879 4.67964 4.71891 4.72304 4.86093 4.93164 5.01820 5.06168 5.10133 5.22229 5.31533 5.38130 5.47253 5.57887 5.74051 5.95542 6.02090 6.54930 6.94869 7.19179 7.63973 8.59843 9.27941 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015071 B = 0.005452 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.422100 B = 5134.202795 C = 6232.136376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.012 4.012 3 C -0.202 4.202 4 C -0.268 4.268 5 C 0.583 3.417 6 O -0.579 6.579 7 N -0.705 5.705 8 C 0.134 3.866 9 C 0.130 3.870 10 H 0.067 0.933 11 C -0.128 4.128 12 C 0.157 3.843 13 N -0.628 5.628 14 C -0.214 4.214 15 H 0.080 0.920 16 C -0.066 4.066 17 N -0.952 5.952 18 Si 0.963 3.037 19 H -0.295 1.295 20 H -0.294 1.294 21 H -0.269 1.269 22 C 0.068 3.932 23 C -0.077 4.077 24 O -0.178 6.178 25 H 0.101 0.899 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.165 0.835 29 H 0.406 0.594 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.028 0.972 35 H 0.024 0.976 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.067 -13.997 -10.649 18.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.060 4.060 3 C -0.221 4.221 4 C -0.272 4.272 5 C 0.372 3.628 6 O -0.462 6.462 7 N -0.354 5.354 8 C 0.009 3.991 9 C 0.024 3.976 10 H 0.085 0.915 11 C -0.167 4.167 12 C 0.032 3.968 13 N -0.354 5.354 14 C -0.342 4.342 15 H 0.098 0.902 16 C -0.259 4.259 17 N -0.602 5.602 18 Si 0.792 3.208 19 H -0.223 1.223 20 H -0.220 1.220 21 H -0.193 1.193 22 C 0.015 3.985 23 C -0.133 4.133 24 O -0.075 6.075 25 H 0.119 0.881 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.182 0.818 29 H 0.241 0.759 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.046 0.954 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.593 -14.622 -10.366 18.503 hybrid contribution -0.818 0.718 1.260 1.665 sum -5.411 -13.904 -9.106 17.480 Atomic orbital electron populations 1.20541 0.81619 1.05427 1.05156 1.22950 0.95536 0.82839 1.04645 1.22824 0.90268 1.00695 1.08339 1.21259 0.94127 0.94127 1.17692 1.17483 0.87623 0.82164 0.75536 1.90681 1.29862 1.72432 1.53238 1.45748 1.10754 1.05383 1.73560 1.21585 0.86298 0.90053 1.01138 1.22670 0.95080 0.91700 0.88164 0.91542 1.23558 0.96220 0.97081 0.99836 1.22044 0.90526 0.89321 0.94908 1.46515 1.57917 1.17746 1.13227 1.19264 1.23290 0.95534 0.96159 0.90212 1.25480 1.02993 0.95827 1.01638 1.69995 1.54224 1.04711 1.31258 0.85285 0.77873 0.77373 0.80234 1.22277 1.22021 1.19346 1.23157 0.83685 0.94061 0.97563 1.20631 0.90806 0.96908 1.04923 1.83701 1.15954 1.36076 1.71734 0.88089 0.89219 0.88016 0.81771 0.75927 0.93648 0.89880 0.90001 0.88597 0.95397 0.95851 0.94475 0.88826 0.87778 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.40 71.24 0.74 -0.23 16 2 C -0.01 -0.27 7.28 24.76 0.18 -0.09 16 3 C -0.20 -5.51 10.48 23.65 0.25 -5.26 16 4 C -0.27 -8.52 6.31 -18.99 -0.12 -8.64 16 5 C 0.58 21.16 7.81 86.65 0.68 21.84 16 6 O -0.58 -23.26 14.85 -4.07 -0.06 -23.32 16 7 N -0.71 -24.84 5.51 -466.43 -2.57 -27.42 16 8 C 0.13 4.77 5.54 86.38 0.48 5.25 16 9 C 0.13 4.82 4.33 45.09 0.20 5.02 16 10 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 11 C -0.13 -4.39 7.86 31.25 0.25 -4.14 16 12 C 0.16 7.24 7.31 86.48 0.63 7.87 16 13 N -0.63 -30.63 3.56 -694.08 -2.47 -33.10 16 14 C -0.21 -11.63 10.49 84.03 0.88 -10.75 16 15 H 0.08 4.23 7.80 -2.91 -0.02 4.20 16 16 C -0.07 -3.78 5.49 84.86 0.47 -3.31 16 17 N -0.95 -57.49 11.76 21.65 0.25 -57.24 16 18 Si 0.96 46.35 29.56 68.60 2.03 48.38 16 19 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 20 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C 0.07 1.91 7.37 25.26 0.19 2.10 16 23 C -0.08 -1.70 9.88 71.23 0.70 -1.00 16 24 O -0.18 -4.54 10.52 4.45 0.05 -4.50 16 25 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.16 4.06 7.74 -2.91 -0.02 4.04 16 29 H 0.41 13.75 7.64 -92.71 -0.71 13.04 16 30 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 32 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.03 1.44 7.69 -2.38 -0.02 1.42 16 35 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.09 2.42 6.49 -2.39 -0.02 2.40 16 Total: -1.00 -71.49 332.85 3.09 -68.40 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.35 Total: 20.14 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 5.52 Total: 8.65 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.79 Total: -117.75 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.01 Total: -27.81 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -71.49 3.09 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038048930.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.151 kcal (2) G-P(sol) polarization free energy of solvation -71.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds