Wall clock time and date at job start Tue Mar 31 2020 01:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40368 * 126.44371 * 2 1 4 4 C 1.36541 * 106.70949 * 180.02562 * 3 2 1 5 5 C 1.46654 * 125.98989 * 179.97438 * 4 3 2 6 6 O 1.21697 * 119.99853 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00238 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99982 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47224 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.78027 * 56.27136 * 9 8 7 11 11 C 1.53489 * 113.47121 * 187.05993 * 9 8 7 12 12 C 1.53236 * 83.43357 * 140.67602 * 11 9 8 13 13 N 1.47072 * 113.46402 * 285.49801 * 9 8 7 14 14 C 1.36931 * 136.06174 * 38.06047 * 13 9 8 15 15 H 1.08002 * 120.00098 * 359.97438 * 14 13 9 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 9 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 O 1.34909 * 108.02121 * 0.22702 * 4 3 2 23 23 C 1.33933 * 109.39013 * 359.62457 * 22 4 3 24 24 C 1.50694 * 125.61734 * 180.12889 * 23 22 4 25 25 H 1.09006 * 109.47192 * 89.97367 * 1 2 3 26 26 H 1.09000 * 109.47039 * 209.97237 * 1 2 3 27 27 H 1.09003 * 109.47152 * 329.97611 * 1 2 3 28 28 H 1.08007 * 126.64312 * 359.97022 * 3 2 1 29 29 H 0.97000 * 120.00177 * 0.02562 * 7 5 4 30 30 H 1.08999 * 109.47147 * 60.00057 * 8 7 5 31 31 H 1.08999 * 109.47011 * 299.99948 * 8 7 5 32 32 H 1.09001 * 114.21043 * 254.43431 * 11 9 8 33 33 H 1.09004 * 114.20551 * 27.06151 * 11 9 8 34 34 H 1.09005 * 113.38689 * 219.29895 * 12 11 9 35 35 H 1.08998 * 113.47153 * 88.92769 * 12 11 9 36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.46948 * 270.28912 * 24 23 22 38 38 H 1.08997 * 109.47770 * 30.28964 * 24 23 22 39 39 H 1.08999 * 109.47319 * 150.29664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8379 1.4941 -0.0013 6 8 4.7471 2.7076 -0.0019 7 7 6.0520 0.9092 -0.0013 8 6 7.2626 1.7343 -0.0027 9 6 8.4965 0.8296 -0.0030 10 1 8.5063 0.1296 -0.8384 11 6 9.8158 1.5950 0.1687 12 6 10.1916 0.3984 1.0490 13 7 8.7565 0.1933 1.2972 14 6 7.9967 -0.3468 2.3002 15 1 6.9201 -0.3591 2.2152 16 6 8.6100 -0.8775 3.4267 17 7 9.9220 -0.8611 3.5310 18 14 7.5734 -1.6137 4.7953 19 1 8.4616 -2.1077 5.8779 20 1 6.6616 -0.5753 5.3388 21 1 6.7729 -2.7428 4.2571 22 8 3.5857 -0.6803 -0.0060 23 6 2.3096 -1.0871 -0.0006 24 6 1.8455 -2.5207 -0.0013 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 2.0266 2.1625 -0.0005 29 1 6.1244 -0.0581 -0.0012 30 1 7.2738 2.3643 0.8867 31 1 7.2730 2.3627 -0.8932 32 1 10.4039 1.6826 -0.7449 33 1 9.7194 2.5357 0.7108 34 1 10.7510 0.6771 1.9422 35 1 10.6575 -0.4176 0.4967 36 1 10.3506 -1.2316 4.3184 37 1 1.7335 -2.8659 -1.0292 38 1 2.5802 -3.1409 0.5122 39 1 0.8869 -2.5926 0.5125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038154687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:50 Heat of formation + Delta-G solvation = 27.239098 kcal Electronic energy + Delta-G solvation = -21542.583253 eV Core-core repulsion = 18260.720176 eV Total energy + Delta-G solvation = -3281.863077 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -42.69669 -39.27403 -38.04767 -34.66797 -33.98096 -32.23672 -32.03025 -28.94457 -28.26269 -27.87189 -25.92385 -23.48192 -22.67843 -21.50028 -21.04306 -19.65521 -19.11464 -17.81859 -16.60983 -16.49499 -15.69310 -15.53057 -15.22766 -14.47491 -14.29406 -13.85223 -13.80584 -13.38145 -13.29918 -13.08849 -13.03070 -12.85363 -12.74317 -12.32647 -11.93756 -11.65829 -11.54093 -11.12719 -10.99802 -10.77336 -10.60579 -10.18328 -9.86655 -9.85143 -9.70148 -9.27436 -8.81779 -8.73226 -8.31428 -6.91353 -5.77716 -3.10367 1.15039 2.27225 2.69388 3.37961 3.39449 3.43026 3.43512 3.52229 4.42588 4.58147 4.72120 4.83918 5.06285 5.18062 5.22963 5.33329 5.38787 5.44111 5.52395 5.54901 5.62030 5.70283 5.75215 5.88471 5.89601 5.99862 6.06880 6.29318 6.38486 6.43010 6.58100 6.66521 6.77477 6.95783 7.21483 7.37849 7.56692 7.80977 7.96574 8.37550 9.02248 9.69303 10.61493 11.39378 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.005337 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.759653 B = 5245.318254 C = 6450.928435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.196 4.196 3 C -0.123 4.123 4 C -0.067 4.067 5 C 0.597 3.403 6 O -0.533 6.533 7 N -0.700 5.700 8 C 0.120 3.880 9 C 0.126 3.874 10 H 0.049 0.951 11 C -0.160 4.160 12 C 0.152 3.848 13 N -0.601 5.601 14 C -0.215 4.215 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.918 5.918 18 Si 0.908 3.092 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.285 1.285 22 O -0.157 6.157 23 C 0.013 3.987 24 C -0.077 4.077 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.025 0.975 36 H 0.254 0.746 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 -0.552 -9.454 16.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.198 4.198 3 C -0.143 4.143 4 C -0.119 4.119 5 C 0.383 3.617 6 O -0.412 6.412 7 N -0.348 5.348 8 C -0.004 4.004 9 C 0.018 3.982 10 H 0.067 0.933 11 C -0.199 4.199 12 C 0.026 3.974 13 N -0.327 5.327 14 C -0.342 4.342 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.565 5.565 18 Si 0.738 3.262 19 H -0.215 1.215 20 H -0.211 1.211 21 H -0.212 1.212 22 O -0.053 6.053 23 C -0.040 4.040 24 C -0.134 4.134 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.175 0.825 29 H 0.244 0.756 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.043 0.957 36 H 0.064 0.936 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.775 -0.053 -9.105 16.512 hybrid contribution -0.549 -0.916 0.806 1.338 sum -14.323 -0.968 -8.299 16.582 Atomic orbital electron populations 1.20163 0.88792 1.02630 1.02009 1.20162 0.97341 0.91831 1.10435 1.21753 0.90544 1.00288 1.01754 1.22157 0.96414 0.80197 1.13166 1.16565 0.81422 0.86302 0.77452 1.90841 1.86112 1.12238 1.52033 1.45912 1.05245 1.11404 1.72286 1.21926 0.82875 0.93974 1.01668 1.22437 0.91969 0.92884 0.90869 0.93336 1.23614 0.96736 0.99570 0.99981 1.21972 0.87839 0.91300 0.96254 1.45660 1.02757 1.69956 1.14349 1.18804 0.89256 1.31830 0.94329 0.90314 1.24757 0.95758 1.01405 0.98312 1.69821 1.07187 1.50338 1.29158 0.86267 0.79052 0.79081 0.81814 1.21489 1.21104 1.21186 1.84049 1.28682 1.21922 1.70634 1.22557 0.80785 0.97147 1.03482 1.20389 1.01971 0.87300 1.03712 0.91476 0.91610 0.91421 0.82457 0.75639 0.90672 0.91840 0.92254 0.90157 0.90981 0.95695 0.93628 0.89744 0.89998 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 36.01 0.37 -0.31 16 2 C -0.20 -2.44 6.14 -104.93 -0.64 -3.08 16 3 C -0.12 -1.80 10.57 -39.39 -0.42 -2.22 16 4 C -0.07 -1.13 7.13 -36.80 -0.26 -1.39 16 5 C 0.60 11.18 7.78 -12.87 -0.10 11.08 16 6 O -0.53 -11.11 16.86 5.19 0.09 -11.02 16 7 N -0.70 -12.87 5.33 -61.63 -0.33 -13.20 16 8 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 9 C 0.13 2.46 4.11 -72.40 -0.30 2.16 16 10 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 11 C -0.16 -2.91 8.01 -26.36 -0.21 -3.12 16 12 C 0.15 3.49 7.37 -8.64 -0.06 3.42 16 13 N -0.60 -14.81 3.65 -177.15 -0.65 -15.46 16 14 C -0.21 -5.86 10.55 -15.06 -0.16 -6.02 16 15 H 0.08 2.09 7.51 -52.49 -0.39 1.70 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -27.09 11.51 55.49 0.64 -26.45 16 18 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 O -0.16 -2.48 10.40 5.00 0.05 -2.43 16 23 C 0.01 0.16 7.31 -35.42 -0.26 -0.10 16 24 C -0.08 -0.65 10.21 36.00 0.37 -0.29 16 25 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.46 7.13 -51.93 -0.37 0.09 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.16 2.12 8.06 -52.48 -0.42 1.70 16 29 H 0.41 7.43 8.13 -40.82 -0.33 7.10 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 34 H 0.07 1.85 7.14 -51.93 -0.37 1.48 16 35 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.57 7.13 -51.93 -0.37 0.20 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -32.57 333.81 -7.61 -40.18 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.62 Total: 3.97 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.80 Total: 2.08 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.34 Total: -55.12 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.14 Total: -13.45 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -32.57 -7.61 -40.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038154687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.417 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds