Wall clock time and date at job start Tue Mar 31 2020 01:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40368 * 126.44371 * 2 1 4 4 C 1.36541 * 106.70949 * 180.02562 * 3 2 1 5 5 C 1.46654 * 125.98989 * 179.97438 * 4 3 2 6 6 O 1.21697 * 119.99853 * 359.97438 * 5 4 3 7 7 N 1.34767 * 120.00238 * 179.97438 * 5 4 3 8 8 C 1.46502 * 119.99982 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47224 * 180.02562 * 8 7 5 10 10 H 1.08998 * 112.78027 * 56.27136 * 9 8 7 11 11 C 1.53489 * 113.47121 * 187.05993 * 9 8 7 12 12 C 1.53236 * 83.43357 * 140.67602 * 11 9 8 13 13 N 1.47072 * 113.46402 * 285.49801 * 9 8 7 14 14 C 1.36931 * 136.06174 * 38.06047 * 13 9 8 15 15 H 1.08002 * 120.00098 * 359.97438 * 14 13 9 16 16 C 1.38812 * 120.00429 * 180.02562 * 14 13 9 17 17 N 1.31624 * 119.99535 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00484 * 179.97438 * 16 14 13 19 19 H 1.48490 * 109.47339 * 180.02562 * 18 16 14 20 20 H 1.48493 * 109.47239 * 300.00542 * 18 16 14 21 21 H 1.48504 * 109.46636 * 60.00101 * 18 16 14 22 22 O 1.34909 * 108.02121 * 0.22702 * 4 3 2 23 23 C 1.33933 * 109.39013 * 359.62457 * 22 4 3 24 24 C 1.50694 * 125.61734 * 180.12889 * 23 22 4 25 25 H 1.09006 * 109.47192 * 89.97367 * 1 2 3 26 26 H 1.09000 * 109.47039 * 209.97237 * 1 2 3 27 27 H 1.09003 * 109.47152 * 329.97611 * 1 2 3 28 28 H 1.08007 * 126.64312 * 359.97022 * 3 2 1 29 29 H 0.97000 * 120.00177 * 0.02562 * 7 5 4 30 30 H 1.08999 * 109.47147 * 60.00057 * 8 7 5 31 31 H 1.08999 * 109.47011 * 299.99948 * 8 7 5 32 32 H 1.09001 * 114.21043 * 254.43431 * 11 9 8 33 33 H 1.09004 * 114.20551 * 27.06151 * 11 9 8 34 34 H 1.09005 * 113.38689 * 219.29895 * 12 11 9 35 35 H 1.08998 * 113.47153 * 88.92769 * 12 11 9 36 36 H 0.97005 * 119.99717 * 179.97438 * 17 16 14 37 37 H 1.09007 * 109.46948 * 270.28912 * 24 23 22 38 38 H 1.08997 * 109.47770 * 30.28964 * 24 23 22 39 39 H 1.08999 * 109.47319 * 150.29664 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8379 1.4941 -0.0013 6 8 4.7471 2.7076 -0.0019 7 7 6.0520 0.9092 -0.0013 8 6 7.2626 1.7343 -0.0027 9 6 8.4965 0.8296 -0.0030 10 1 8.5063 0.1296 -0.8384 11 6 9.8158 1.5950 0.1687 12 6 10.1916 0.3984 1.0490 13 7 8.7565 0.1933 1.2972 14 6 7.9967 -0.3468 2.3002 15 1 6.9201 -0.3591 2.2152 16 6 8.6100 -0.8775 3.4267 17 7 9.9220 -0.8611 3.5310 18 14 7.5734 -1.6137 4.7953 19 1 8.4616 -2.1077 5.8779 20 1 6.6616 -0.5753 5.3388 21 1 6.7729 -2.7428 4.2571 22 8 3.5857 -0.6803 -0.0060 23 6 2.3096 -1.0871 -0.0006 24 6 1.8455 -2.5207 -0.0013 25 1 -0.3634 0.0005 -1.0277 26 1 -0.3633 -0.8902 0.5134 27 1 -0.3633 0.8898 0.5142 28 1 2.0266 2.1625 -0.0005 29 1 6.1244 -0.0581 -0.0012 30 1 7.2738 2.3643 0.8867 31 1 7.2730 2.3627 -0.8932 32 1 10.4039 1.6826 -0.7449 33 1 9.7194 2.5357 0.7108 34 1 10.7510 0.6771 1.9422 35 1 10.6575 -0.4176 0.4967 36 1 10.3506 -1.2316 4.3184 37 1 1.7335 -2.8659 -1.0292 38 1 2.5802 -3.1409 0.5122 39 1 0.8869 -2.5926 0.5125 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038154687.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:48 Heat of formation + Delta-G solvation = 5.593314 kcal Electronic energy + Delta-G solvation = -21543.521885 eV Core-core repulsion = 18260.720176 eV Total energy + Delta-G solvation = -3282.801708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.78649 -40.78739 -39.70649 -35.87509 -35.26053 -34.26986 -33.03450 -30.14804 -29.82344 -29.30448 -27.01643 -25.41644 -24.05470 -22.88152 -22.23713 -21.17799 -20.57513 -19.16770 -18.37686 -17.65492 -17.18988 -17.06950 -16.64964 -16.12282 -15.76009 -15.55044 -14.92255 -14.69934 -14.61258 -14.13757 -14.03962 -13.72815 -13.62710 -13.61627 -13.36408 -12.97893 -12.97335 -12.73874 -12.63759 -12.47263 -12.36479 -11.92382 -11.69551 -11.54457 -11.01074 -10.85305 -10.76736 -10.21297 -9.38240 -8.91319 -7.89855 -5.21431 -0.04364 1.25398 1.40407 1.43028 1.48811 1.58352 2.03924 2.17574 2.44932 3.31539 3.39978 3.57644 3.77448 3.84311 3.92951 4.08464 4.28358 4.31159 4.44482 4.58363 4.65341 4.66058 4.68869 4.74261 4.86131 4.89053 5.04362 5.05011 5.06384 5.07023 5.09382 5.26878 5.30944 5.56386 5.56855 5.72587 5.85180 5.95653 6.38169 6.91196 6.94500 7.61581 8.61427 9.27332 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.005337 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.759653 B = 5245.318254 C = 6450.928435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.201 4.201 3 C -0.118 4.118 4 C -0.108 4.108 5 C 0.596 3.404 6 O -0.563 6.563 7 N -0.701 5.701 8 C 0.128 3.872 9 C 0.131 3.869 10 H 0.069 0.931 11 C -0.131 4.131 12 C 0.144 3.856 13 N -0.630 5.630 14 C -0.210 4.210 15 H 0.080 0.920 16 C -0.067 4.067 17 N -0.951 5.951 18 Si 0.965 3.035 19 H -0.293 1.293 20 H -0.285 1.285 21 H -0.275 1.275 22 O -0.175 6.175 23 C 0.013 3.987 24 C -0.078 4.078 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.163 0.837 29 H 0.408 0.592 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.037 0.963 35 H 0.023 0.977 36 H 0.246 0.754 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 -1.234 -10.740 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.203 4.203 3 C -0.138 4.138 4 C -0.159 4.159 5 C 0.384 3.616 6 O -0.446 6.446 7 N -0.349 5.349 8 C 0.003 3.997 9 C 0.025 3.975 10 H 0.086 0.914 11 C -0.170 4.170 12 C 0.018 3.982 13 N -0.356 5.356 14 C -0.338 4.338 15 H 0.097 0.903 16 C -0.260 4.260 17 N -0.600 5.600 18 Si 0.794 3.206 19 H -0.219 1.219 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.072 6.072 23 C -0.039 4.039 24 C -0.134 4.134 25 H 0.100 0.900 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.181 0.819 29 H 0.244 0.756 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.059 -0.733 -10.428 19.162 hybrid contribution 0.068 -0.726 1.125 1.341 sum -15.991 -1.459 -9.303 18.558 Atomic orbital electron populations 1.20292 0.85798 1.03947 1.03383 1.20611 0.99264 0.90603 1.09779 1.22071 0.90374 1.01415 0.99973 1.21837 0.96152 0.80876 1.17049 1.16800 0.81982 0.86231 0.76585 1.90803 1.86686 1.13457 1.53606 1.45900 1.05317 1.11314 1.72364 1.21777 0.82719 0.93632 1.01536 1.22599 0.93063 0.92891 0.88978 0.91377 1.23429 0.95687 0.97412 1.00458 1.21997 0.86870 0.93453 0.95874 1.45980 1.03708 1.69998 1.15952 1.19089 0.89684 1.30111 0.94958 0.90265 1.25491 0.96787 1.03013 1.00687 1.69995 1.08510 1.52057 1.29464 0.85347 0.77566 0.78448 0.79227 1.21883 1.21209 1.20105 1.84025 1.30544 1.21382 1.71251 1.23540 0.79750 0.99285 1.01298 1.20664 1.02947 0.84344 1.05433 0.89970 0.89471 0.90993 0.81930 0.75627 0.93320 0.89398 0.87931 0.90054 0.94492 0.95887 0.94455 0.87607 0.90210 0.86440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 10.17 71.24 0.72 -0.34 16 2 C -0.20 -4.55 6.14 -20.06 -0.12 -4.67 16 3 C -0.12 -3.36 10.57 22.39 0.24 -3.12 16 4 C -0.11 -3.61 7.13 24.07 0.17 -3.44 16 5 C 0.60 22.59 7.78 86.44 0.67 23.26 16 6 O -0.56 -23.84 16.86 -4.34 -0.07 -23.91 16 7 N -0.70 -25.78 5.33 -467.11 -2.49 -28.27 16 8 C 0.13 4.64 5.52 86.38 0.48 5.12 16 9 C 0.13 4.93 4.11 41.79 0.17 5.10 16 10 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 11 C -0.13 -4.53 8.01 30.84 0.25 -4.28 16 12 C 0.14 6.62 7.37 83.09 0.61 7.23 16 13 N -0.63 -31.18 3.65 -714.39 -2.61 -33.79 16 14 C -0.21 -11.59 10.55 84.03 0.89 -10.71 16 15 H 0.08 4.25 7.51 -2.91 -0.02 4.23 16 16 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 17 N -0.95 -57.71 11.51 21.65 0.25 -57.46 16 18 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 19 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 20 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 O -0.18 -5.44 10.40 -5.02 -0.05 -5.49 16 23 C 0.01 0.32 7.31 24.97 0.18 0.50 16 24 C -0.08 -1.06 10.21 71.23 0.73 -0.33 16 25 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 26 H 0.09 0.83 7.13 -2.39 -0.02 0.81 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 29 H 0.41 14.89 8.13 -92.71 -0.75 14.14 16 30 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.08 2.81 8.12 -2.38 -0.02 2.79 16 34 H 0.04 1.95 7.14 -2.38 -0.02 1.93 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.25 14.66 8.31 -92.70 -0.77 13.89 16 37 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 0.97 7.13 -2.39 -0.02 0.96 16 Total: -1.00 -72.62 333.81 2.81 -69.81 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 0.31 Total: 19.48 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.45 Total: 10.96 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -4.85 Total: -119.52 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.13 Total: -29.41 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -72.62 2.81 -69.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038154687.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.406 kcal (2) G-P(sol) polarization free energy of solvation -72.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds