Wall clock time and date at job start Tue Mar 31 2020 01:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.40367 * 126.44718 * 2 1 4 4 C 1.36545 * 106.71082 * 180.26452 * 3 2 1 5 5 C 1.46655 * 125.98819 * 179.76780 * 4 3 2 6 6 O 1.21689 * 119.99954 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99863 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99803 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47034 * 179.97438 * 8 7 5 10 10 H 1.09004 * 112.73521 * 303.75566 * 9 8 7 11 11 C 1.53497 * 113.46779 * 172.93976 * 9 8 7 12 12 C 1.53499 * 83.34343 * 219.15069 * 11 9 8 13 13 N 1.47070 * 87.98846 * 26.06518 * 12 11 9 14 14 C 1.36930 * 136.06101 * 152.91369 * 13 12 11 15 15 H 1.07994 * 120.00377 * 176.11015 * 14 13 12 16 16 C 1.38813 * 119.99976 * 356.10551 * 14 13 12 17 17 N 1.31622 * 119.99949 * 6.72269 * 16 14 13 18 18 Si 1.86802 * 120.00353 * 186.72460 * 16 14 13 19 19 H 1.48499 * 109.47217 * 94.97989 * 18 16 14 20 20 H 1.48498 * 109.47151 * 214.98386 * 18 16 14 21 21 H 1.48496 * 109.46860 * 334.98219 * 18 16 14 22 22 O 1.34916 * 108.02029 * 359.77918 * 4 3 2 23 23 C 1.33922 * 109.38805 * 0.02562 * 22 4 3 24 24 C 1.50702 * 125.61727 * 179.97438 * 23 22 4 25 25 H 1.08997 * 109.47084 * 270.10624 * 1 2 3 26 26 H 1.09006 * 109.47189 * 30.10713 * 1 2 3 27 27 H 1.08999 * 109.47336 * 150.10911 * 1 2 3 28 28 H 1.08001 * 126.64100 * 0.04036 * 3 2 1 29 29 H 0.97004 * 120.00166 * 359.97438 * 7 5 4 30 30 H 1.09000 * 109.46858 * 299.99053 * 8 7 5 31 31 H 1.08993 * 109.47193 * 59.99397 * 8 7 5 32 32 H 1.08997 * 114.20504 * 332.73390 * 11 9 8 33 33 H 1.08999 * 114.20653 * 105.56405 * 11 9 8 34 34 H 1.09000 * 113.46772 * 271.28932 * 12 11 9 35 35 H 1.09000 * 113.47083 * 140.84525 * 12 11 9 36 36 H 0.96998 * 120.00309 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46829 * 0.02562 * 24 23 22 38 38 H 1.09004 * 109.47544 * 120.01753 * 24 23 22 39 39 H 1.08994 * 109.47461 * 240.02112 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3408 1.1291 0.0000 4 6 3.6261 0.6680 -0.0060 5 6 4.8379 1.4939 -0.0131 6 8 4.7471 2.7075 -0.0144 7 7 6.0520 0.9090 -0.0181 8 6 7.2626 1.7340 -0.0257 9 6 8.4964 0.8293 -0.0296 10 1 8.5098 0.1315 0.8078 11 6 9.8148 1.5942 -0.2106 12 6 10.1860 0.3900 -1.0871 13 7 8.7494 0.1893 -1.3294 14 6 7.9840 -0.3547 -2.3260 15 1 6.9129 -0.4247 -2.2073 16 6 8.5850 -0.8162 -3.4892 17 7 9.8974 -0.8536 -3.5816 18 14 7.5311 -1.3840 -4.9232 19 1 7.3530 -0.2631 -5.8809 20 1 8.1985 -2.5196 -5.6088 21 1 6.2040 -1.8205 -4.4198 22 8 3.5857 -0.6805 -0.0046 23 6 2.3097 -1.0871 0.0016 24 6 1.8454 -2.5208 0.0044 25 1 -0.3633 0.0019 1.0276 26 1 -0.3634 0.8891 -0.5155 27 1 -0.3634 -0.8909 -0.5121 28 1 2.0267 2.1624 0.0006 29 1 6.1244 -0.0584 -0.0167 30 1 7.2690 2.3615 -0.9170 31 1 7.2779 2.3650 0.8629 32 1 9.7161 2.5317 -0.7579 33 1 10.4079 1.6843 0.6994 34 1 10.6504 -0.4246 -0.5314 35 1 10.7436 0.6610 -1.9836 36 1 10.3174 -1.1764 -4.3942 37 1 2.7111 -3.1830 0.0011 38 1 1.2485 -2.7077 0.8972 39 1 1.2407 -2.7087 -0.8828 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038154688.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:55 Heat of formation + Delta-G solvation = 27.075975 kcal Electronic energy + Delta-G solvation = -21544.899643 eV Core-core repulsion = 18263.029492 eV Total energy + Delta-G solvation = -3281.870150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.69408 -39.27102 -38.04128 -34.65593 -33.97437 -32.23970 -32.02743 -28.95741 -28.26362 -27.86769 -25.90794 -23.48517 -22.67710 -21.50132 -21.04551 -19.65859 -19.11452 -17.81421 -16.62730 -16.49345 -15.68830 -15.52621 -15.22138 -14.47724 -14.26917 -13.80410 -13.76043 -13.40097 -13.29922 -13.07996 -13.03284 -12.86153 -12.76305 -12.40719 -11.93358 -11.63234 -11.52067 -11.17662 -11.01830 -10.77679 -10.59074 -10.17432 -9.85979 -9.83539 -9.69839 -9.30420 -8.78252 -8.72331 -8.31087 -6.92443 -5.79041 -3.10626 1.15232 2.27137 2.69941 3.37628 3.39608 3.43524 3.44534 3.52545 4.42131 4.58825 4.72663 4.83983 5.09602 5.18034 5.22758 5.32451 5.37770 5.45205 5.50226 5.54430 5.63194 5.70526 5.75083 5.88481 5.89199 5.99960 6.07001 6.29719 6.37925 6.43339 6.57698 6.66455 6.77291 6.95992 7.20875 7.38665 7.56038 7.81092 7.96106 8.37709 9.01566 9.68873 10.61150 11.38385 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.005312 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.156557 B = 5269.709931 C = 6425.221178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.197 4.197 3 C -0.123 4.123 4 C -0.067 4.067 5 C 0.597 3.403 6 O -0.533 6.533 7 N -0.700 5.700 8 C 0.120 3.880 9 C 0.126 3.874 10 H 0.049 0.951 11 C -0.160 4.160 12 C 0.150 3.850 13 N -0.601 5.601 14 C -0.215 4.215 15 H 0.080 0.920 16 C -0.005 4.005 17 N -0.917 5.917 18 Si 0.907 3.093 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.281 1.281 22 O -0.157 6.157 23 C 0.013 3.987 24 C -0.077 4.077 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.158 0.842 29 H 0.408 0.592 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.059 0.941 34 H 0.025 0.975 35 H 0.072 0.928 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.934 -0.527 9.563 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.198 4.198 3 C -0.143 4.143 4 C -0.120 4.120 5 C 0.383 3.617 6 O -0.412 6.412 7 N -0.348 5.348 8 C -0.004 4.004 9 C 0.019 3.981 10 H 0.066 0.934 11 C -0.199 4.199 12 C 0.025 3.975 13 N -0.327 5.327 14 C -0.342 4.342 15 H 0.097 0.903 16 C -0.202 4.202 17 N -0.564 5.564 18 Si 0.737 3.263 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.207 1.207 22 O -0.053 6.053 23 C -0.040 4.040 24 C -0.133 4.133 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.175 0.825 29 H 0.243 0.757 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.744 -0.028 9.216 16.548 hybrid contribution -0.545 -0.831 -0.852 1.309 sum -14.289 -0.859 8.364 16.579 Atomic orbital electron populations 1.20145 0.88783 1.02646 1.01988 1.20160 0.97348 0.91831 1.10453 1.21754 0.90544 1.00292 1.01750 1.22160 0.96421 0.80193 1.13190 1.16564 0.81421 0.86301 0.77445 1.90839 1.86106 1.12239 1.52039 1.45914 1.05260 1.11384 1.72288 1.21922 0.82854 0.93963 1.01675 1.22437 0.92004 0.92849 0.90859 0.93367 1.23644 0.96708 0.99531 0.99972 1.22055 0.87832 0.91283 0.96336 1.45733 1.02733 1.69424 1.14831 1.18857 0.89602 1.33282 0.92466 0.90273 1.24760 0.95756 1.01620 0.98022 1.69839 1.07448 1.51873 1.27206 0.86180 0.79212 0.77952 0.82931 1.21529 1.21696 1.20653 1.84055 1.28693 1.21939 1.70577 1.22567 0.80769 0.97147 1.03497 1.20377 1.02038 0.87292 1.03589 0.91502 0.91413 0.91623 0.82463 0.75670 0.90648 0.91840 0.90114 0.92239 0.95736 0.90970 0.93680 0.90092 0.89464 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 36.00 0.37 -0.31 16 2 C -0.20 -2.45 6.14 -104.93 -0.64 -3.09 16 3 C -0.12 -1.80 10.57 -39.39 -0.42 -2.22 16 4 C -0.07 -1.13 7.13 -36.80 -0.26 -1.39 16 5 C 0.60 11.19 7.78 -12.87 -0.10 11.09 16 6 O -0.53 -11.11 16.86 5.20 0.09 -11.02 16 7 N -0.70 -12.88 5.36 -61.63 -0.33 -13.21 16 8 C 0.12 2.22 5.52 -4.04 -0.02 2.20 16 9 C 0.13 2.46 4.10 -72.39 -0.30 2.16 16 10 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 11 C -0.16 -2.90 8.03 -26.22 -0.21 -3.11 16 12 C 0.15 3.45 7.42 -8.50 -0.06 3.39 16 13 N -0.60 -14.80 3.65 -176.98 -0.65 -15.45 16 14 C -0.21 -5.86 10.54 -15.06 -0.16 -6.02 16 15 H 0.08 2.11 7.49 -52.49 -0.39 1.71 16 16 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 17 N -0.92 -27.05 11.53 55.49 0.64 -26.41 16 18 Si 0.91 22.37 29.56 -169.99 -5.02 17.35 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 O -0.16 -2.49 10.40 5.01 0.05 -2.43 16 23 C 0.01 0.16 7.31 -35.41 -0.26 -0.10 16 24 C -0.08 -0.65 9.92 36.01 0.36 -0.29 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 28 H 0.16 2.13 8.06 -52.49 -0.42 1.70 16 29 H 0.41 7.43 8.07 -40.82 -0.33 7.10 16 30 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.85 7.11 -51.93 -0.37 1.48 16 36 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -32.60 335.28 -7.68 -40.28 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -5.71 Total: 3.76 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -1.81 Total: 2.08 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.34 Total: -55.07 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.14 Total: -13.45 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.60 -7.68 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038154688.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.360 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds