Wall clock time and date at job start Tue Mar 31 2020 01:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35127 * 125.61486 * 2 1 4 4 C 1.40367 * 107.11315 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.64553 * 179.97438 * 4 3 2 6 6 C 1.36545 * 106.70771 * 0.23998 * 4 3 2 7 7 C 1.46656 * 125.98594 * 179.74031 * 6 4 3 8 8 O 1.21689 * 120.00012 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99830 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00301 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47549 * 179.97438 * 10 9 7 12 12 H 1.09006 * 112.73907 * 56.24379 * 11 10 9 13 13 C 1.53490 * 113.47094 * 187.05745 * 11 10 9 14 14 C 1.53494 * 83.34791 * 140.84782 * 13 11 10 15 15 N 1.47067 * 113.46854 * 285.49682 * 11 10 9 16 16 C 1.36934 * 136.05887 * 38.06416 * 15 11 10 17 17 H 1.08006 * 119.99690 * 359.97438 * 16 15 11 18 18 C 1.38807 * 120.00080 * 179.97438 * 16 15 11 19 19 N 1.31620 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46938 * 90.00465 * 20 18 16 22 22 H 1.48497 * 109.46838 * 210.00429 * 20 18 16 23 23 H 1.48498 * 109.47058 * 330.00090 * 20 18 16 24 24 O 1.33928 * 125.61301 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47256 * 90.00223 * 1 2 3 26 26 H 1.08994 * 109.46964 * 210.00173 * 1 2 3 27 27 H 1.09005 * 109.46893 * 329.99731 * 1 2 3 28 28 H 1.07996 * 126.44533 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47152 * 90.02436 * 5 4 3 30 30 H 1.09001 * 109.46980 * 330.02536 * 5 4 3 31 31 H 1.09004 * 109.47113 * 210.02517 * 5 4 3 32 32 H 0.97004 * 120.00078 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.46744 * 300.00327 * 10 9 7 34 34 H 1.09001 * 109.47015 * 59.99682 * 10 9 7 35 35 H 1.09000 * 114.20889 * 254.43747 * 13 11 10 36 36 H 1.09003 * 114.20749 * 27.26368 * 13 11 10 37 37 H 1.08995 * 113.47278 * 219.15080 * 14 13 11 38 38 H 1.09005 * 113.46463 * 88.71539 * 14 13 11 39 39 H 0.97000 * 119.99574 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 0.0006 5 6 4.8618 1.5143 0.0003 6 6 3.5823 -0.7117 -0.0045 7 6 4.7414 -1.6101 -0.0113 8 8 5.8680 -1.1499 -0.0132 9 7 4.5590 -2.9454 -0.0154 10 6 5.7168 -3.8430 -0.0227 11 6 5.2362 -5.2955 -0.0255 12 1 4.5703 -5.5174 -0.8595 13 6 6.3713 -6.3153 0.1398 14 6 5.3466 -7.0457 1.0189 15 7 4.7150 -5.7425 1.2750 16 6 3.9701 -5.1888 2.2818 17 1 3.6264 -4.1681 2.2006 18 6 3.6567 -5.9392 3.4067 19 7 4.0760 -7.1829 3.5059 20 14 2.6411 -5.1835 4.7804 21 1 1.1993 -5.4272 4.5216 22 1 3.0229 -5.8014 6.0756 23 1 2.8939 -3.7212 4.8360 24 8 2.2869 -1.0888 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9613 2.1260 -0.0004 29 1 5.1600 1.7223 1.0279 30 1 4.6513 2.4521 -0.5139 31 1 5.6685 0.9914 -0.5134 32 1 3.6610 -3.3123 -0.0135 33 1 6.3156 -3.6563 -0.9142 34 1 6.3219 -3.6626 0.8658 35 1 6.6329 -6.8454 -0.7760 36 1 7.2369 -5.9365 0.6833 37 1 5.7829 -7.4991 1.9088 38 1 4.7106 -7.7346 0.4629 39 1 3.8572 -7.7071 4.2922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038156446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:33 Heat of formation + Delta-G solvation = 27.821185 kcal Electronic energy + Delta-G solvation = -21715.923393 eV Core-core repulsion = 18434.085558 eV Total energy + Delta-G solvation = -3281.837835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.67053 -39.25761 -38.04405 -34.55896 -33.66631 -32.48722 -32.20598 -28.60968 -27.96877 -27.92963 -26.30777 -23.47945 -22.37188 -21.50125 -20.94888 -19.67766 -19.16843 -17.96682 -16.60155 -16.47197 -15.67154 -15.30793 -15.17959 -14.45811 -14.24062 -13.87480 -13.59620 -13.38835 -13.27383 -13.02812 -12.95855 -12.83973 -12.63145 -12.36680 -11.91252 -11.61254 -11.54181 -11.12714 -10.99970 -10.76932 -10.59058 -10.07161 -9.83888 -9.80463 -9.62615 -9.25981 -8.82082 -8.73486 -8.29165 -6.91155 -5.77842 -3.10437 1.15951 2.32398 2.71866 3.37174 3.40522 3.43201 3.44765 3.55231 4.42589 4.54722 4.79973 4.93172 5.16473 5.21693 5.25473 5.36125 5.38380 5.53004 5.54607 5.59741 5.69808 5.75568 5.84931 5.90365 6.06060 6.10157 6.17437 6.30316 6.38884 6.47552 6.58413 6.68812 6.80357 6.97676 7.21909 7.37935 7.57156 7.83810 7.96731 8.40775 9.02381 9.69315 10.61478 11.39314 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.005693 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.672340 B = 4917.316821 C = 6052.730550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 C -0.226 4.226 4 C -0.092 4.092 5 C -0.092 4.092 6 C -0.078 4.078 7 C 0.598 3.402 8 O -0.530 6.530 9 N -0.701 5.701 10 C 0.121 3.879 11 C 0.126 3.874 12 H 0.049 0.951 13 C -0.160 4.160 14 C 0.151 3.849 15 N -0.601 5.601 16 C -0.214 4.214 17 H 0.080 0.920 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.289 1.289 23 H -0.281 1.281 24 O -0.158 6.158 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.153 0.847 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.408 0.592 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.532 12.841 -9.454 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.035 4.035 3 C -0.245 4.245 4 C -0.095 4.095 5 C -0.148 4.148 6 C -0.130 4.130 7 C 0.384 3.616 8 O -0.410 6.410 9 N -0.350 5.350 10 C -0.004 4.004 11 C 0.018 3.982 12 H 0.066 0.934 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.327 5.327 16 C -0.341 4.341 17 H 0.098 0.902 18 C -0.203 4.203 19 N -0.565 5.565 20 Si 0.738 3.262 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 O -0.054 6.054 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.170 0.830 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.243 0.757 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.980 12.814 -9.104 15.999 hybrid contribution -1.253 0.274 0.830 1.528 sum -4.233 13.089 -8.274 16.053 Atomic orbital electron populations 1.20400 0.84750 1.04536 1.03774 1.22740 0.94262 0.84195 1.02320 1.21409 0.91923 0.99557 1.11576 1.20565 0.96252 0.92210 1.00500 1.20394 0.93997 0.97648 1.02799 1.21993 0.81960 0.94226 1.14775 1.16536 0.85853 0.81803 0.77406 1.90799 1.22027 1.76099 1.52096 1.45910 1.11612 1.04983 1.72477 1.21903 0.87516 0.89325 1.01608 1.22433 0.94003 0.90923 0.90821 0.93379 1.23657 0.97482 0.98795 0.99948 1.22033 0.90025 0.89168 0.96204 1.45691 1.62289 1.10492 1.14236 1.18862 1.25242 0.95873 0.94143 0.90243 1.24759 1.01124 0.96080 0.98333 1.69827 1.49475 1.07992 1.29213 0.86189 0.79913 0.78326 0.81818 1.21615 1.21565 1.20641 1.84047 1.15969 1.34628 1.70760 0.89714 0.89970 0.89128 0.82972 0.90956 0.91808 0.89462 0.75716 0.91885 0.90720 0.92271 0.90131 0.90934 0.95723 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.41 36.01 0.37 -0.27 16 2 C 0.02 0.22 7.31 -35.41 -0.26 -0.04 16 3 C -0.23 -2.81 10.73 -39.89 -0.43 -3.23 16 4 C -0.09 -1.37 6.20 -104.43 -0.65 -2.02 16 5 C -0.09 -1.19 9.82 36.01 0.35 -0.84 16 6 C -0.08 -1.32 7.13 -36.80 -0.26 -1.58 16 7 C 0.60 11.14 7.79 -12.86 -0.10 11.04 16 8 O -0.53 -10.70 14.73 5.20 0.08 -10.62 16 9 N -0.70 -12.90 5.33 -61.63 -0.33 -13.23 16 10 C 0.12 2.23 5.52 -4.04 -0.02 2.20 16 11 C 0.13 2.46 4.10 -72.40 -0.30 2.16 16 12 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 13 C -0.16 -2.91 8.03 -26.22 -0.21 -3.12 16 14 C 0.15 3.47 7.39 -8.51 -0.06 3.41 16 15 N -0.60 -14.81 3.65 -177.00 -0.65 -15.46 16 16 C -0.21 -5.84 10.55 -15.06 -0.16 -6.00 16 17 H 0.08 2.12 7.51 -52.48 -0.39 1.73 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -27.13 11.51 55.49 0.64 -26.49 16 20 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 O -0.16 -2.52 10.40 4.99 0.05 -2.47 16 25 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.26 6.43 -51.93 -0.33 0.93 16 32 H 0.41 7.46 8.13 -40.82 -0.33 7.13 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 37 H 0.07 1.86 7.12 -51.93 -0.37 1.49 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -32.32 332.07 -7.68 -40.00 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.64 Total: 4.48 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.82 Total: 1.45 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.34 Total: -55.18 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.13 Total: -13.09 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.32 -7.68 -40.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038156446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.821 kcal (2) G-P(sol) polarization free energy of solvation -32.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds