Wall clock time and date at job start Tue Mar 31 2020 01:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35127 * 125.61486 * 2 1 4 4 C 1.40367 * 107.11315 * 179.97438 * 3 2 1 5 5 C 1.50703 * 126.64553 * 179.97438 * 4 3 2 6 6 C 1.36545 * 106.70771 * 0.23998 * 4 3 2 7 7 C 1.46656 * 125.98594 * 179.74031 * 6 4 3 8 8 O 1.21689 * 120.00012 * 359.97438 * 7 6 4 9 9 N 1.34773 * 119.99830 * 179.97438 * 7 6 4 10 10 C 1.46499 * 120.00301 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47549 * 179.97438 * 10 9 7 12 12 H 1.09006 * 112.73907 * 56.24379 * 11 10 9 13 13 C 1.53490 * 113.47094 * 187.05745 * 11 10 9 14 14 C 1.53494 * 83.34791 * 140.84782 * 13 11 10 15 15 N 1.47067 * 113.46854 * 285.49682 * 11 10 9 16 16 C 1.36934 * 136.05887 * 38.06416 * 15 11 10 17 17 H 1.08006 * 119.99690 * 359.97438 * 16 15 11 18 18 C 1.38807 * 120.00080 * 179.97438 * 16 15 11 19 19 N 1.31620 * 120.00034 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99918 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46938 * 90.00465 * 20 18 16 22 22 H 1.48497 * 109.46838 * 210.00429 * 20 18 16 23 23 H 1.48498 * 109.47058 * 330.00090 * 20 18 16 24 24 O 1.33928 * 125.61301 * 179.97438 * 2 1 3 25 25 H 1.08998 * 109.47256 * 90.00223 * 1 2 3 26 26 H 1.08994 * 109.46964 * 210.00173 * 1 2 3 27 27 H 1.09005 * 109.46893 * 329.99731 * 1 2 3 28 28 H 1.07996 * 126.44533 * 359.97438 * 3 2 1 29 29 H 1.09002 * 109.47152 * 90.02436 * 5 4 3 30 30 H 1.09001 * 109.46980 * 330.02536 * 5 4 3 31 31 H 1.09004 * 109.47113 * 210.02517 * 5 4 3 32 32 H 0.97004 * 120.00078 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.46744 * 300.00327 * 10 9 7 34 34 H 1.09001 * 109.47015 * 59.99682 * 10 9 7 35 35 H 1.09000 * 114.20889 * 254.43747 * 13 11 10 36 36 H 1.09003 * 114.20749 * 27.26368 * 13 11 10 37 37 H 1.08995 * 113.47278 * 219.15080 * 14 13 11 38 38 H 1.09005 * 113.46463 * 88.71539 * 14 13 11 39 39 H 0.97000 * 119.99574 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 0.0006 5 6 4.8618 1.5143 0.0003 6 6 3.5823 -0.7117 -0.0045 7 6 4.7414 -1.6101 -0.0113 8 8 5.8680 -1.1499 -0.0132 9 7 4.5590 -2.9454 -0.0154 10 6 5.7168 -3.8430 -0.0227 11 6 5.2362 -5.2955 -0.0255 12 1 4.5703 -5.5174 -0.8595 13 6 6.3713 -6.3153 0.1398 14 6 5.3466 -7.0457 1.0189 15 7 4.7150 -5.7425 1.2750 16 6 3.9701 -5.1888 2.2818 17 1 3.6264 -4.1681 2.2006 18 6 3.6567 -5.9392 3.4067 19 7 4.0760 -7.1829 3.5059 20 14 2.6411 -5.1835 4.7804 21 1 1.1993 -5.4272 4.5216 22 1 3.0229 -5.8014 6.0756 23 1 2.8939 -3.7212 4.8360 24 8 2.2869 -1.0888 0.0005 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.9613 2.1260 -0.0004 29 1 5.1600 1.7223 1.0279 30 1 4.6513 2.4521 -0.5139 31 1 5.6685 0.9914 -0.5134 32 1 3.6610 -3.3123 -0.0135 33 1 6.3156 -3.6563 -0.9142 34 1 6.3219 -3.6626 0.8658 35 1 6.6329 -6.8454 -0.7760 36 1 7.2369 -5.9365 0.6833 37 1 5.7829 -7.4991 1.9088 38 1 4.7106 -7.7346 0.4629 39 1 3.8572 -7.7071 4.2922 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038156446.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:30 Heat of formation + Delta-G solvation = 6.444318 kcal Electronic energy + Delta-G solvation = -21716.850364 eV Core-core repulsion = 18434.085558 eV Total energy + Delta-G solvation = -3282.764806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -43.75654 -40.74899 -39.68935 -35.89454 -34.92591 -34.27111 -33.37046 -30.15014 -29.75404 -28.89742 -27.55056 -25.41653 -23.88632 -22.64030 -22.20277 -21.17796 -20.61573 -19.35129 -18.39427 -17.63640 -17.15385 -17.06541 -16.43740 -16.06731 -15.70990 -15.51733 -14.92177 -14.73928 -14.49973 -14.11344 -14.02120 -13.74073 -13.63914 -13.58589 -13.36018 -13.25761 -13.00244 -12.73075 -12.61927 -12.58145 -12.36692 -11.88674 -11.65812 -11.38513 -10.96670 -10.85029 -10.66062 -10.19272 -9.41808 -8.91363 -7.90355 -5.21836 -0.01881 1.31293 1.39998 1.41495 1.49503 1.62986 2.06383 2.21338 2.44539 3.31074 3.41162 3.59217 3.77657 3.81275 3.92785 4.10741 4.31713 4.44071 4.47324 4.56399 4.59767 4.66255 4.69879 4.73517 4.75331 4.85998 4.95711 5.04693 5.06156 5.14721 5.22335 5.30277 5.32627 5.52460 5.57071 5.72652 5.87767 5.95645 6.42373 6.91840 6.99165 7.61231 8.61159 9.27038 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.005693 C = 0.004625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.672340 B = 4917.316821 C = 6052.730550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.021 3.979 3 C -0.228 4.228 4 C -0.089 4.089 5 C -0.091 4.091 6 C -0.124 4.124 7 C 0.595 3.405 8 O -0.555 6.555 9 N -0.704 5.704 10 C 0.129 3.871 11 C 0.131 3.869 12 H 0.068 0.932 13 C -0.131 4.131 14 C 0.143 3.857 15 N -0.630 5.630 16 C -0.209 4.209 17 H 0.079 0.921 18 C -0.068 4.068 19 N -0.951 5.951 20 Si 0.966 3.034 21 H -0.283 1.283 22 H -0.294 1.294 23 H -0.277 1.277 24 O -0.178 6.178 25 H 0.106 0.894 26 H 0.078 0.922 27 H 0.118 0.882 28 H 0.188 0.812 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.023 0.977 39 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 14.953 -10.729 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.031 4.031 3 C -0.247 4.247 4 C -0.092 4.092 5 C -0.147 4.147 6 C -0.175 4.175 7 C 0.383 3.617 8 O -0.437 6.437 9 N -0.352 5.352 10 C 0.005 3.995 11 C 0.024 3.976 12 H 0.085 0.915 13 C -0.169 4.169 14 C 0.017 3.983 15 N -0.356 5.356 16 C -0.337 4.337 17 H 0.097 0.903 18 C -0.261 4.261 19 N -0.601 5.601 20 Si 0.795 3.205 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.203 1.203 24 O -0.076 6.076 25 H 0.124 0.876 26 H 0.097 0.903 27 H 0.137 0.863 28 H 0.206 0.794 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.242 0.758 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.041 0.959 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -4.155 14.943 -10.416 18.683 hybrid contribution -0.940 -0.299 1.145 1.512 sum -5.096 14.645 -9.271 18.066 Atomic orbital electron populations 1.20671 0.81523 1.05757 1.05481 1.23745 0.96020 0.83556 0.99779 1.21809 0.90486 1.01202 1.11174 1.21021 0.98050 0.91692 0.98405 1.20434 0.92758 0.98496 1.03054 1.21760 0.82104 0.94714 1.18901 1.16789 0.86351 0.81859 0.76670 1.90768 1.23139 1.76477 1.53357 1.45907 1.11395 1.05170 1.72755 1.21738 0.87502 0.88784 1.01448 1.22595 0.94303 0.91788 0.88895 0.91501 1.23470 0.95996 0.97017 1.00430 1.22061 0.91428 0.88960 0.95837 1.46006 1.62055 1.11709 1.15833 1.19133 1.23934 0.95831 0.94796 0.90277 1.25493 1.03120 0.96731 1.00730 1.69999 1.51347 1.09166 1.29553 0.85256 0.78687 0.77513 0.79021 1.21025 1.22093 1.20264 1.84023 1.15852 1.36215 1.71468 0.87597 0.90272 0.86325 0.79443 0.90749 0.88620 0.91425 0.75824 0.89471 0.93382 0.87955 0.90012 0.94436 0.95925 0.94452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.41 71.24 0.74 -0.29 16 2 C 0.02 0.49 7.31 24.97 0.18 0.67 16 3 C -0.23 -5.01 10.73 22.07 0.24 -4.77 16 4 C -0.09 -2.51 6.20 -19.74 -0.12 -2.64 16 5 C -0.09 -2.23 9.82 71.24 0.70 -1.53 16 6 C -0.12 -4.17 7.13 24.07 0.17 -4.00 16 7 C 0.60 22.47 7.79 86.44 0.67 23.14 16 8 O -0.56 -22.78 14.73 -4.31 -0.06 -22.84 16 9 N -0.70 -26.00 5.33 -467.12 -2.49 -28.49 16 10 C 0.13 4.71 5.52 86.38 0.48 5.19 16 11 C 0.13 4.93 4.10 41.79 0.17 5.10 16 12 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 13 C -0.13 -4.51 8.03 30.92 0.25 -4.26 16 14 C 0.14 6.60 7.39 83.18 0.61 7.21 16 15 N -0.63 -31.24 3.65 -713.90 -2.61 -33.85 16 16 C -0.21 -11.55 10.55 84.03 0.89 -10.66 16 17 H 0.08 4.28 7.51 -2.91 -0.02 4.26 16 18 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 19 N -0.95 -57.86 11.51 21.65 0.25 -57.61 16 20 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 21 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 24 O -0.18 -5.58 10.40 -5.05 -0.05 -5.63 16 25 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.19 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.94 6.43 -2.38 -0.02 1.93 16 32 H 0.41 15.01 8.13 -92.71 -0.75 14.25 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.08 2.83 8.12 -2.39 -0.02 2.81 16 37 H 0.04 1.98 7.12 -2.39 -0.02 1.96 16 38 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -72.37 332.07 2.82 -69.56 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.30 Total: 20.28 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.45 Total: 9.72 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -4.85 Total: -119.95 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.12 Total: -28.47 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -72.37 2.82 -69.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038156446.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.001 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds