Wall clock time and date at job start Tue Mar 31 2020 01:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35128 * 125.62140 * 2 1 4 4 C 1.40364 * 107.11921 * 179.78368 * 3 2 1 5 5 C 1.50702 * 126.64567 * 180.30161 * 4 3 2 6 6 C 1.36547 * 106.70396 * 0.40623 * 4 3 2 7 7 C 1.46656 * 125.98410 * 179.85314 * 6 4 3 8 8 O 1.21691 * 120.00156 * 359.71750 * 7 6 4 9 9 N 1.34780 * 119.99927 * 179.72283 * 7 6 4 10 10 C 1.46500 * 119.99871 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46786 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.78530 * 303.72872 * 11 10 9 13 13 C 1.53499 * 113.46472 * 172.93553 * 11 10 9 14 14 C 1.53749 * 83.25991 * 218.98716 * 13 11 10 15 15 N 1.47072 * 113.46180 * 74.50654 * 11 10 9 16 16 C 1.36931 * 136.06174 * 321.86155 * 15 11 10 17 17 H 1.08002 * 120.00098 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 11 19 19 N 1.31624 * 119.99535 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00484 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47339 * 180.02562 * 20 18 16 22 22 H 1.48493 * 109.47239 * 300.00542 * 20 18 16 23 23 H 1.48504 * 109.46636 * 60.00101 * 20 18 16 24 24 O 1.33937 * 125.61232 * 180.02562 * 2 1 3 25 25 H 1.09002 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46947 * 299.98228 * 1 2 3 27 27 H 1.09006 * 109.47272 * 59.98291 * 1 2 3 28 28 H 1.08005 * 126.43561 * 0.03664 * 3 2 1 29 29 H 1.08996 * 109.46598 * 270.12454 * 5 4 3 30 30 H 1.08998 * 109.47110 * 30.13029 * 5 4 3 31 31 H 1.09006 * 109.46549 * 150.12735 * 5 4 3 32 32 H 0.97001 * 119.99969 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.46704 * 59.99925 * 10 9 7 34 34 H 1.08998 * 109.46915 * 299.99782 * 10 9 7 35 35 H 1.09000 * 114.20984 * 332.74702 * 13 11 10 36 36 H 1.09004 * 114.19718 * 105.37227 * 13 11 10 37 37 H 1.09004 * 113.47201 * 271.50865 * 14 13 11 38 38 H 1.09001 * 113.55046 * 140.98942 * 14 13 11 39 39 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.0984 0.0000 4 6 3.6251 0.6530 0.0051 5 6 4.8617 1.5142 0.0133 6 6 3.5822 -0.7118 -0.0013 7 6 4.7414 -1.6103 -0.0023 8 8 5.8679 -1.1501 -0.0023 9 7 4.5589 -2.9456 -0.0033 10 6 5.7167 -3.8432 -0.0048 11 6 5.2360 -5.2957 -0.0051 12 1 4.5744 -5.5215 0.8312 13 6 6.3704 -6.3149 -0.1798 14 6 5.3368 -7.0437 -1.0540 15 7 4.7087 -5.7377 -1.3049 16 6 3.9582 -5.1806 -2.3055 17 1 3.6131 -4.1609 -2.2180 18 6 3.6398 -5.9266 -3.4321 19 7 4.0591 -7.1697 -3.5381 20 14 2.6154 -5.1667 -4.7968 21 1 2.4160 -6.1632 -5.8795 22 1 1.2958 -4.7550 -4.2545 23 1 3.3196 -3.9779 -5.3410 24 8 2.2869 -1.0889 -0.0005 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8901 27 1 -0.3634 0.5141 -0.8899 28 1 1.9613 2.1260 0.0006 29 1 5.1634 1.7265 -1.0123 30 1 4.6495 2.4498 0.5308 31 1 5.6667 0.9890 0.5276 32 1 3.6609 -3.3124 -0.0030 33 1 6.3192 -3.6603 0.8850 34 1 6.3181 -3.6589 -0.8950 35 1 7.2334 -5.9340 -0.7259 36 1 6.6386 -6.8459 0.7336 37 1 4.7017 -7.7304 -0.4943 38 1 5.7650 -7.4982 -1.9474 39 1 3.8364 -7.6912 -4.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038156451.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:10:35 Heat of formation + Delta-G solvation = 6.717207 kcal Electronic energy + Delta-G solvation = -21715.560432 eV Core-core repulsion = 18432.807459 eV Total energy + Delta-G solvation = -3282.752973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.75562 -40.74395 -39.67886 -35.89175 -34.92470 -34.26640 -33.36820 -30.14894 -29.74361 -28.90022 -27.54813 -25.41011 -23.88487 -22.63721 -22.19845 -21.18214 -20.61613 -19.35089 -18.39425 -17.63372 -17.15126 -17.05703 -16.43352 -16.06827 -15.70716 -15.51370 -14.91410 -14.73623 -14.49001 -14.11261 -14.03573 -13.74221 -13.63952 -13.58208 -13.35382 -13.25095 -12.97885 -12.73766 -12.63295 -12.59147 -12.36568 -11.88045 -11.66499 -11.38428 -10.96174 -10.84705 -10.65647 -10.19122 -9.41350 -8.91207 -7.89938 -5.21562 -0.01760 1.31178 1.40239 1.42767 1.48672 1.63241 2.06468 2.21528 2.44988 3.31243 3.41478 3.59219 3.77835 3.81353 3.92498 4.10860 4.31747 4.44630 4.46172 4.55914 4.59764 4.66173 4.71226 4.73186 4.75319 4.85802 4.95394 5.05003 5.06121 5.15001 5.22514 5.30352 5.32596 5.52568 5.57135 5.72508 5.87884 5.95933 6.42463 6.91878 6.99240 7.61484 8.61454 9.27156 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.005696 C = 0.004623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.938422 B = 4914.694190 C = 6055.247473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.022 3.978 3 C -0.229 4.229 4 C -0.088 4.088 5 C -0.091 4.091 6 C -0.124 4.124 7 C 0.595 3.405 8 O -0.556 6.556 9 N -0.704 5.704 10 C 0.130 3.870 11 C 0.130 3.870 12 H 0.067 0.933 13 C -0.131 4.131 14 C 0.143 3.857 15 N -0.630 5.630 16 C -0.210 4.210 17 H 0.079 0.921 18 C -0.067 4.067 19 N -0.951 5.951 20 Si 0.966 3.034 21 H -0.293 1.293 22 H -0.276 1.276 23 H -0.285 1.285 24 O -0.178 6.178 25 H 0.077 0.923 26 H 0.116 0.884 27 H 0.109 0.891 28 H 0.188 0.812 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.407 0.593 33 H 0.087 0.913 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.102 0.898 37 H 0.023 0.977 38 H 0.038 0.962 39 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.718 14.886 10.764 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.031 4.031 3 C -0.247 4.247 4 C -0.091 4.091 5 C -0.147 4.147 6 C -0.175 4.175 7 C 0.383 3.617 8 O -0.437 6.437 9 N -0.352 5.352 10 C 0.006 3.994 11 C 0.024 3.976 12 H 0.085 0.915 13 C -0.169 4.169 14 C 0.017 3.983 15 N -0.356 5.356 16 C -0.339 4.339 17 H 0.097 0.903 18 C -0.260 4.260 19 N -0.600 5.600 20 Si 0.795 3.205 21 H -0.219 1.219 22 H -0.202 1.202 23 H -0.212 1.212 24 O -0.075 6.075 25 H 0.096 0.904 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.205 0.795 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.242 0.758 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.041 0.959 38 H 0.056 0.944 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -4.170 14.867 10.451 18.645 hybrid contribution -0.937 -0.278 -1.137 1.500 sum -5.107 14.588 9.314 18.046 Atomic orbital electron populations 1.20672 0.81544 1.05214 1.06023 1.23740 0.96012 0.83550 0.99763 1.21786 0.90488 1.01218 1.11225 1.21016 0.98033 0.91677 0.98392 1.20429 0.92743 0.98488 1.03052 1.21754 0.82100 0.94720 1.18938 1.16791 0.86353 0.81853 0.76671 1.90769 1.23138 1.76484 1.53349 1.45909 1.11387 1.05175 1.72764 1.21735 0.87504 0.88776 1.01435 1.22596 0.94269 0.91812 0.88928 0.91530 1.23512 0.95947 0.97032 1.00425 1.22116 0.91389 0.88904 0.95894 1.46018 1.61858 1.11634 1.16064 1.19096 1.23827 0.95921 0.95012 0.90296 1.25498 1.03102 0.96740 1.00702 1.69994 1.51277 1.09283 1.29486 0.85339 0.79056 0.76953 0.79197 1.21870 1.20157 1.21155 1.84034 1.15862 1.36218 1.71427 0.90366 0.86544 0.87244 0.79465 0.90755 0.88616 0.91451 0.75830 0.89489 0.93375 0.90024 0.87993 0.95922 0.94381 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.41 71.23 0.74 -0.29 16 2 C 0.02 0.50 7.31 24.97 0.18 0.68 16 3 C -0.23 -5.02 10.73 22.07 0.24 -4.78 16 4 C -0.09 -2.50 6.20 -19.74 -0.12 -2.62 16 5 C -0.09 -2.22 9.81 71.24 0.70 -1.52 16 6 C -0.12 -4.18 7.13 24.07 0.17 -4.01 16 7 C 0.60 22.45 7.79 86.44 0.67 23.13 16 8 O -0.56 -22.77 14.74 -4.32 -0.06 -22.83 16 9 N -0.70 -26.01 5.33 -467.10 -2.49 -28.50 16 10 C 0.13 4.72 5.52 86.38 0.48 5.20 16 11 C 0.13 4.93 4.10 41.79 0.17 5.10 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 13 C -0.13 -4.52 8.04 31.01 0.25 -4.27 16 14 C 0.14 6.59 7.41 83.26 0.62 7.21 16 15 N -0.63 -31.25 3.65 -713.34 -2.60 -33.86 16 16 C -0.21 -11.65 10.55 84.03 0.89 -10.76 16 17 H 0.08 4.26 7.50 -2.91 -0.02 4.24 16 18 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 19 N -0.95 -57.83 11.50 21.65 0.25 -57.59 16 20 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 24 O -0.18 -5.57 10.40 -5.10 -0.05 -5.63 16 25 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.93 6.45 -2.38 -0.02 1.92 16 32 H 0.41 15.02 8.13 -92.71 -0.75 14.27 16 33 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.08 2.83 8.12 -2.39 -0.02 2.81 16 36 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.04 2.01 7.11 -2.39 -0.02 1.99 16 39 H 0.25 14.69 8.31 -92.70 -0.77 13.92 16 Total: -1.00 -72.24 332.09 2.82 -69.41 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.31 Total: 20.54 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 5.45 Total: 9.65 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -4.84 Total: -119.94 kcal Atomic # 8 Polarization: -28.34 SS G_CDS: -0.12 Total: -28.46 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Total: -72.24 2.82 -69.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038156451.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.129 kcal (2) G-P(sol) polarization free energy of solvation -72.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds