Wall clock time and date at job start Tue Mar 31 2020 01:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40363 * 126.44221 * 2 1 4 4 C 1.36543 * 106.70653 * 180.02562 * 3 2 1 5 5 C 1.46664 * 125.98634 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00022 * 6.30308 * 5 4 3 7 7 N 1.34768 * 119.99897 * 186.30016 * 5 4 3 8 8 C 1.46502 * 120.00472 * 355.77549 * 7 5 4 9 9 C 1.46506 * 119.99958 * 175.77024 * 7 5 4 10 10 C 1.53490 * 114.20636 * 240.00328 * 9 7 5 11 11 N 1.47074 * 87.98561 * 220.14730 * 10 9 7 12 12 C 1.36936 * 136.05532 * 207.08266 * 11 10 9 13 13 H 1.07992 * 120.00172 * 7.92509 * 12 11 10 14 14 C 1.38811 * 119.99404 * 187.92099 * 12 11 10 15 15 N 1.31628 * 119.99510 * 194.33843 * 14 12 11 16 16 Si 1.86801 * 120.00503 * 14.33685 * 14 12 11 17 17 H 1.48506 * 109.46885 * 269.99899 * 16 14 12 18 18 H 1.48502 * 109.46829 * 29.99790 * 16 14 12 19 19 H 1.48493 * 109.47202 * 149.99648 * 16 14 12 20 20 C 1.47069 * 87.88275 * 27.34536 * 11 10 9 21 21 O 1.34905 * 108.02468 * 0.24199 * 4 3 2 22 22 C 1.33929 * 109.38699 * 359.59884 * 21 4 3 23 23 C 1.50699 * 125.61762 * 180.12279 * 22 21 4 24 24 H 1.08999 * 109.47220 * 89.97235 * 1 2 3 25 25 H 1.08994 * 109.46761 * 209.97404 * 1 2 3 26 26 H 1.09004 * 109.46948 * 329.97683 * 1 2 3 27 27 H 1.08003 * 126.64571 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.46665 * 275.77994 * 8 7 5 29 29 H 1.09001 * 109.46741 * 35.76985 * 8 7 5 30 30 H 1.08998 * 109.47518 * 155.77674 * 8 7 5 31 31 H 1.09000 * 113.27878 * 13.07101 * 9 7 5 32 32 H 1.08998 * 113.47147 * 105.36745 * 10 9 7 33 33 H 1.08999 * 113.47084 * 334.92299 * 10 9 7 34 34 H 0.96990 * 119.99993 * 354.92808 * 15 14 12 35 35 H 1.08995 * 113.47066 * 87.43938 * 20 11 10 36 36 H 1.08999 * 113.46070 * 217.88381 * 20 11 10 37 37 H 1.08999 * 109.47434 * 270.32466 * 23 22 21 38 38 H 1.09001 * 109.47075 * 30.33138 * 23 22 21 39 39 H 1.09007 * 109.47198 * 150.32729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8380 1.4941 -0.0013 6 8 4.7508 2.7024 0.1142 7 7 6.0480 0.9150 -0.1299 8 6 6.1604 -0.5450 -0.1759 9 6 7.2513 1.7455 -0.2239 10 6 8.0477 1.5550 -1.5221 11 7 9.2770 1.6351 -0.7187 12 6 10.5746 2.0142 -0.9371 13 1 10.8516 2.4779 -1.8722 14 6 11.5338 1.8024 0.0437 15 7 12.7006 2.4064 -0.0357 16 14 11.1688 0.6603 1.4762 17 1 10.5629 1.4377 2.5870 18 1 10.2223 -0.3967 1.0377 19 1 12.4310 0.0321 1.9424 20 6 8.5008 1.1228 0.4206 21 8 3.5858 -0.6804 -0.0063 22 6 2.3097 -1.0870 -0.0006 23 6 1.8455 -2.5208 -0.0016 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 2.0266 2.1625 0.0004 28 1 6.1818 -0.9399 0.8399 29 1 5.3039 -0.9586 -0.7084 30 1 7.0787 -0.8227 -0.6932 31 1 7.0777 2.7874 0.0452 32 1 7.9345 2.3797 -2.2258 33 1 7.8952 0.5805 -1.9860 34 1 12.9180 2.9407 -0.8154 35 1 8.4676 0.0344 0.4688 36 1 8.7735 1.5794 1.3720 37 1 1.7337 -2.8658 -1.0295 38 1 2.5802 -3.1409 0.5120 39 1 0.8868 -2.5926 0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042620937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:16 Heat of formation + Delta-G solvation = 49.634840 kcal Electronic energy + Delta-G solvation = -21669.453104 eV Core-core repulsion = 18388.561180 eV Total energy + Delta-G solvation = -3280.891924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.93069 -39.93022 -38.04492 -35.13065 -34.30604 -32.37027 -32.10118 -29.01585 -28.29363 -26.96165 -26.39840 -25.33552 -23.34617 -21.68937 -21.00610 -19.65977 -19.06029 -17.53505 -17.27119 -16.79310 -16.55143 -15.76525 -15.12782 -15.03328 -14.33600 -13.90295 -13.77993 -13.46982 -13.39472 -13.30417 -13.23083 -13.07992 -12.90583 -12.56306 -12.08678 -12.03991 -11.98356 -11.74095 -11.60607 -11.22821 -10.65276 -10.24813 -10.12236 -9.86825 -9.68333 -9.25697 -8.76913 -8.64397 -8.31665 -7.23508 -6.34550 -3.27710 0.95739 2.09977 2.45945 3.07037 3.18028 3.39970 3.44906 3.59989 4.29812 4.54451 4.56196 4.56606 4.79583 4.88282 5.04173 5.05526 5.09481 5.24722 5.28888 5.34326 5.36814 5.44560 5.56331 5.59092 5.66423 5.72319 5.74816 5.84450 6.00167 6.13073 6.26051 6.27290 6.34633 6.40812 6.71045 6.95922 7.04093 7.42843 8.09680 8.20657 8.93490 9.45716 10.30243 11.15669 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036740 B = 0.003918 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.930338 B = 7145.293227 C = 7513.428609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.193 4.193 3 C -0.119 4.119 4 C -0.068 4.068 5 C 0.598 3.402 6 O -0.523 6.523 7 N -0.590 5.590 8 C 0.070 3.930 9 C 0.100 3.900 10 C 0.108 3.892 11 N -0.616 5.616 12 C -0.306 4.306 13 H 0.084 0.916 14 C -0.022 4.022 15 N -0.929 5.929 16 Si 1.062 2.938 17 H -0.292 1.292 18 H -0.282 1.282 19 H -0.294 1.294 20 C 0.094 3.906 21 O -0.153 6.153 22 C 0.004 3.996 23 C -0.076 4.076 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.158 0.842 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.128 0.872 32 H 0.051 0.949 33 H 0.039 0.961 34 H 0.262 0.738 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.234 -10.995 0.260 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.194 4.194 3 C -0.140 4.140 4 C -0.119 4.119 5 C 0.386 3.614 6 O -0.401 6.401 7 N -0.321 5.321 8 C -0.072 4.072 9 C -0.004 4.004 10 C -0.020 4.020 11 N -0.344 5.344 12 C -0.432 4.432 13 H 0.102 0.898 14 C -0.221 4.221 15 N -0.571 5.571 16 Si 0.893 3.107 17 H -0.220 1.220 18 H -0.208 1.208 19 H -0.221 1.221 20 C -0.033 4.033 21 O -0.050 6.050 22 C -0.048 4.048 23 C -0.133 4.133 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.176 0.824 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.146 0.854 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -24.070 -11.047 1.676 26.537 hybrid contribution -0.603 0.519 -1.529 1.724 sum -24.673 -10.528 0.147 26.826 Atomic orbital electron populations 1.20182 0.88794 1.02652 1.02146 1.20182 0.97369 0.91830 1.10053 1.21788 0.90531 1.00397 1.01269 1.22085 0.96192 0.80194 1.13469 1.16717 0.81127 0.86251 0.77344 1.90868 1.85587 1.12670 1.51004 1.47819 1.06075 1.07667 1.70495 1.22061 1.03590 0.79093 1.02476 1.23694 0.80984 0.96308 0.99425 1.22789 0.86239 0.98945 0.94006 1.45879 1.06023 1.75679 1.06827 1.20115 0.81205 1.36694 1.05147 0.89795 1.25805 0.93335 1.01101 1.01872 1.70896 1.23397 1.32771 1.30018 0.83789 0.74807 0.76598 0.75499 1.21957 1.20826 1.22122 1.23134 0.88562 0.97608 0.93979 1.84276 1.27904 1.21902 1.70904 1.22657 0.81402 0.97118 1.03597 1.20379 1.01906 0.87216 1.03767 0.91384 0.91598 0.91369 0.82411 0.92208 0.90102 0.89847 0.85408 0.93045 0.94385 0.92727 0.93106 0.92457 0.89727 0.90193 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.17 36.01 0.37 -0.18 16 2 C -0.19 -1.94 6.14 -104.93 -0.64 -2.58 16 3 C -0.12 -1.48 10.58 -39.39 -0.42 -1.90 16 4 C -0.07 -0.95 6.78 -36.79 -0.25 -1.20 16 5 C 0.60 9.99 7.64 -12.86 -0.10 9.89 16 6 O -0.52 -10.20 16.37 5.19 0.09 -10.11 16 7 N -0.59 -9.61 3.12 -175.10 -0.55 -10.16 16 8 C 0.07 0.93 8.49 59.85 0.51 1.43 16 9 C 0.10 1.90 4.59 -67.67 -0.31 1.59 16 10 C 0.11 2.20 8.23 -8.50 -0.07 2.13 16 11 N -0.62 -15.35 3.63 -184.61 -0.67 -16.02 16 12 C -0.31 -8.87 11.04 -15.06 -0.17 -9.03 16 13 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 14 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 15 N -0.93 -29.44 13.70 55.49 0.76 -28.68 16 16 Si 1.06 26.57 25.50 -169.99 -4.33 22.24 16 17 H -0.29 -7.08 6.98 56.52 0.39 -6.68 16 18 H -0.28 -6.43 5.58 56.52 0.32 -6.12 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 C 0.09 2.00 5.00 -8.36 -0.04 1.96 16 21 O -0.15 -1.85 7.25 5.03 0.04 -1.81 16 22 C 0.00 0.04 7.31 -35.42 -0.26 -0.22 16 23 C -0.08 -0.42 10.21 36.00 0.37 -0.05 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.33 7.13 -51.93 -0.37 -0.04 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.95 5.30 -51.93 -0.28 0.68 16 30 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 31 H 0.13 2.60 7.26 -51.93 -0.38 2.22 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.04 0.73 7.05 -51.93 -0.37 0.36 16 34 H 0.26 8.20 8.73 -40.82 -0.36 7.85 16 35 H 0.05 1.03 5.29 -51.93 -0.27 0.75 16 36 H 0.06 1.28 6.19 -51.93 -0.32 0.95 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.34 7.13 -51.93 -0.37 -0.03 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -34.25 315.92 -6.31 -40.55 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.29 Total: -1.88 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -1.11 Total: 1.10 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: -0.45 Total: -54.85 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.12 Total: -11.92 kcal Atomic # 14 Polarization: 26.57 SS G_CDS: -4.33 Total: 22.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.25 -6.31 -40.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042620937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.190 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds