Wall clock time and date at job start Tue Mar 31 2020 01:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.40363 * 126.44221 * 2 1 4 4 C 1.36543 * 106.70653 * 180.02562 * 3 2 1 5 5 C 1.46664 * 125.98634 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00022 * 6.30308 * 5 4 3 7 7 N 1.34768 * 119.99897 * 186.30016 * 5 4 3 8 8 C 1.46502 * 120.00472 * 355.77549 * 7 5 4 9 9 C 1.46506 * 119.99958 * 175.77024 * 7 5 4 10 10 C 1.53490 * 114.20636 * 240.00328 * 9 7 5 11 11 N 1.47074 * 87.98561 * 220.14730 * 10 9 7 12 12 C 1.36936 * 136.05532 * 207.08266 * 11 10 9 13 13 H 1.07992 * 120.00172 * 7.92509 * 12 11 10 14 14 C 1.38811 * 119.99404 * 187.92099 * 12 11 10 15 15 N 1.31628 * 119.99510 * 194.33843 * 14 12 11 16 16 Si 1.86801 * 120.00503 * 14.33685 * 14 12 11 17 17 H 1.48506 * 109.46885 * 269.99899 * 16 14 12 18 18 H 1.48502 * 109.46829 * 29.99790 * 16 14 12 19 19 H 1.48493 * 109.47202 * 149.99648 * 16 14 12 20 20 C 1.47069 * 87.88275 * 27.34536 * 11 10 9 21 21 O 1.34905 * 108.02468 * 0.24199 * 4 3 2 22 22 C 1.33929 * 109.38699 * 359.59884 * 21 4 3 23 23 C 1.50699 * 125.61762 * 180.12279 * 22 21 4 24 24 H 1.08999 * 109.47220 * 89.97235 * 1 2 3 25 25 H 1.08994 * 109.46761 * 209.97404 * 1 2 3 26 26 H 1.09004 * 109.46948 * 329.97683 * 1 2 3 27 27 H 1.08003 * 126.64571 * 0.02562 * 3 2 1 28 28 H 1.09005 * 109.46665 * 275.77994 * 8 7 5 29 29 H 1.09001 * 109.46741 * 35.76985 * 8 7 5 30 30 H 1.08998 * 109.47518 * 155.77674 * 8 7 5 31 31 H 1.09000 * 113.27878 * 13.07101 * 9 7 5 32 32 H 1.08998 * 113.47147 * 105.36745 * 10 9 7 33 33 H 1.08999 * 113.47084 * 334.92299 * 10 9 7 34 34 H 0.96990 * 119.99993 * 354.92808 * 15 14 12 35 35 H 1.08995 * 113.47066 * 87.43938 * 20 11 10 36 36 H 1.08999 * 113.46070 * 217.88381 * 20 11 10 37 37 H 1.08999 * 109.47434 * 270.32466 * 23 22 21 38 38 H 1.09001 * 109.47075 * 30.33138 * 23 22 21 39 39 H 1.09007 * 109.47198 * 150.32729 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8380 1.4941 -0.0013 6 8 4.7508 2.7024 0.1142 7 7 6.0480 0.9150 -0.1299 8 6 6.1604 -0.5450 -0.1759 9 6 7.2513 1.7455 -0.2239 10 6 8.0477 1.5550 -1.5221 11 7 9.2770 1.6351 -0.7187 12 6 10.5746 2.0142 -0.9371 13 1 10.8516 2.4779 -1.8722 14 6 11.5338 1.8024 0.0437 15 7 12.7006 2.4064 -0.0357 16 14 11.1688 0.6603 1.4762 17 1 10.5629 1.4377 2.5870 18 1 10.2223 -0.3967 1.0377 19 1 12.4310 0.0321 1.9424 20 6 8.5008 1.1228 0.4206 21 8 3.5858 -0.6804 -0.0063 22 6 2.3097 -1.0870 -0.0006 23 6 1.8455 -2.5208 -0.0016 24 1 -0.3633 0.0005 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 2.0266 2.1625 0.0004 28 1 6.1818 -0.9399 0.8399 29 1 5.3039 -0.9586 -0.7084 30 1 7.0787 -0.8227 -0.6932 31 1 7.0777 2.7874 0.0452 32 1 7.9345 2.3797 -2.2258 33 1 7.8952 0.5805 -1.9860 34 1 12.9180 2.9407 -0.8154 35 1 8.4676 0.0344 0.4688 36 1 8.7735 1.5794 1.3720 37 1 1.7337 -2.8658 -1.0295 38 1 2.5802 -3.1409 0.5120 39 1 0.8868 -2.5926 0.5121 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042620937.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:15 Heat of formation + Delta-G solvation = 26.007484 kcal Electronic energy + Delta-G solvation = -21670.477663 eV Core-core repulsion = 18388.561180 eV Total energy + Delta-G solvation = -3281.916483 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.80011 -41.37584 -39.59278 -36.35657 -35.29181 -34.41833 -32.94744 -30.17735 -29.53265 -28.10268 -27.46875 -27.02927 -24.78549 -22.96244 -22.09279 -21.06187 -20.35359 -19.56299 -18.39981 -17.97474 -17.72484 -17.12490 -16.50513 -16.33526 -15.66444 -15.52644 -15.26356 -14.59713 -14.30536 -14.20880 -14.04472 -13.84540 -13.70043 -13.62375 -13.55275 -13.41910 -13.16202 -13.07608 -12.76480 -12.54078 -12.40286 -12.02005 -11.56659 -11.43788 -11.33012 -10.91101 -10.73481 -9.82549 -9.33297 -9.30832 -8.67829 -5.53792 -0.03100 1.27951 1.38895 1.43826 1.50325 1.64962 1.92708 2.01708 2.52308 2.96322 3.12306 3.37324 3.49415 3.80993 3.84867 4.00338 4.15737 4.17674 4.33432 4.46612 4.49477 4.52501 4.56422 4.66056 4.69735 4.72051 4.78124 4.88566 4.91570 4.98921 5.09461 5.10108 5.11408 5.17552 5.42080 5.60308 5.89135 5.89699 6.19930 6.63558 6.83333 7.26108 8.18094 8.84152 Molecular weight = 278.14amu Principal moments of inertia in cm(-1) A = 0.036740 B = 0.003918 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.930338 B = 7145.293227 C = 7513.428609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.205 4.205 3 C -0.118 4.118 4 C -0.100 4.100 5 C 0.597 3.403 6 O -0.564 6.564 7 N -0.590 5.590 8 C 0.068 3.932 9 C 0.121 3.879 10 C 0.111 3.889 11 N -0.647 5.647 12 C -0.295 4.295 13 H 0.052 0.948 14 C -0.080 4.080 15 N -0.965 5.965 16 Si 1.099 2.901 17 H -0.281 1.281 18 H -0.244 1.244 19 H -0.299 1.299 20 C 0.094 3.906 21 O -0.157 6.157 22 C 0.017 3.983 23 C -0.077 4.077 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.068 0.932 27 H 0.156 0.844 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.046 0.954 33 H 0.065 0.935 34 H 0.248 0.752 35 H 0.077 0.923 36 H 0.050 0.950 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.648 -14.221 0.956 31.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.206 4.206 3 C -0.139 4.139 4 C -0.152 4.152 5 C 0.388 3.612 6 O -0.445 6.445 7 N -0.320 5.320 8 C -0.073 4.073 9 C 0.016 3.984 10 C -0.016 4.016 11 N -0.376 5.376 12 C -0.422 4.422 13 H 0.070 0.930 14 C -0.273 4.273 15 N -0.610 5.610 16 Si 0.924 3.076 17 H -0.208 1.208 18 H -0.168 1.168 19 H -0.226 1.226 20 C -0.032 4.032 21 O -0.054 6.054 22 C -0.035 4.035 23 C -0.133 4.133 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.174 0.826 28 H 0.093 0.907 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -27.550 -14.306 2.344 31.132 hybrid contribution 0.263 1.503 -1.846 2.395 sum -27.288 -12.803 0.499 30.146 Atomic orbital electron populations 1.20282 0.86353 1.03869 1.03133 1.20566 0.99040 0.90865 1.10113 1.22045 0.90708 1.01289 0.99839 1.21490 0.95214 0.81123 1.17325 1.17004 0.81819 0.86101 0.76318 1.90836 1.86302 1.14506 1.52864 1.47757 1.05004 1.08724 1.70502 1.22258 1.04397 0.76907 1.03745 1.23032 0.81739 0.95833 0.97811 1.22934 0.84217 0.99965 0.94437 1.45828 1.05527 1.76512 1.09731 1.19943 0.83392 1.35255 1.03648 0.93039 1.27172 0.92903 1.02225 1.04952 1.71012 1.25166 1.34746 1.30029 0.83382 0.75392 0.75871 0.72999 1.20807 1.16833 1.22634 1.23306 0.88462 0.98825 0.92583 1.84225 1.29337 1.20682 1.71170 1.23575 0.80335 0.99017 1.00564 1.20661 1.03080 0.84272 1.05316 0.90436 0.89314 0.91309 0.82641 0.90720 0.88475 0.89739 0.87162 0.93590 0.91729 0.94304 0.90522 0.93230 0.87997 0.89264 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.17 71.24 0.72 -0.06 16 2 C -0.20 -3.51 6.14 -20.06 -0.12 -3.64 16 3 C -0.12 -2.78 10.58 22.39 0.24 -2.54 16 4 C -0.10 -2.67 6.78 24.08 0.16 -2.51 16 5 C 0.60 19.62 7.64 86.44 0.66 20.28 16 6 O -0.56 -22.35 16.37 -4.33 -0.07 -22.42 16 7 N -0.59 -18.29 3.12 -826.11 -2.57 -20.86 16 8 C 0.07 1.58 8.49 127.77 1.09 2.66 16 9 C 0.12 4.50 4.59 45.55 0.21 4.71 16 10 C 0.11 4.42 8.23 83.18 0.68 5.11 16 11 N -0.65 -31.96 3.63 -737.97 -2.68 -34.64 16 12 C -0.30 -17.49 11.04 84.03 0.93 -16.57 16 13 H 0.05 3.29 8.06 -2.91 -0.02 3.27 16 14 C -0.08 -4.85 5.50 84.86 0.47 -4.38 16 15 N -0.96 -63.13 13.70 21.65 0.30 -62.83 16 16 Si 1.10 52.90 25.50 68.60 1.75 54.65 16 17 H -0.28 -12.96 6.98 99.48 0.69 -12.27 16 18 H -0.24 -10.10 5.58 99.48 0.56 -9.54 16 19 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 20 C 0.09 3.83 5.00 83.27 0.42 4.24 16 21 O -0.16 -3.35 7.25 -4.93 -0.04 -3.38 16 22 C 0.02 0.27 7.31 24.97 0.18 0.46 16 23 C -0.08 -0.48 10.21 71.24 0.73 0.25 16 24 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.09 0.47 7.13 -2.39 -0.02 0.46 16 26 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 27 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 28 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.10 1.97 5.30 -2.39 -0.01 1.96 16 30 H 0.08 1.95 5.95 -2.39 -0.01 1.94 16 31 H 0.11 4.54 7.26 -2.39 -0.02 4.52 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 2.29 7.05 -2.39 -0.02 2.27 16 34 H 0.25 16.28 8.73 -92.72 -0.81 15.47 16 35 H 0.08 2.78 5.29 -2.39 -0.01 2.77 16 36 H 0.05 2.12 6.19 -2.39 -0.01 2.10 16 37 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.11 0.23 7.13 -2.38 -0.02 0.21 16 Total: -1.00 -77.04 315.92 3.91 -73.13 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.86 Total: 8.35 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 6.36 Total: 8.01 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.95 Total: -118.33 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.11 Total: -25.81 kcal Atomic # 14 Polarization: 52.90 SS G_CDS: 1.75 Total: 54.65 kcal Total: -77.04 3.91 -73.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042620937.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.136 kcal (2) G-P(sol) polarization free energy of solvation -77.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds